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result(s) for
"Han, Yun"
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The role of PD-1 signaling in health and immune-related diseases
2023
Programmed cell death 1 receptor (PD-1) and its ligands constitute an inhibitory pathway to mediate the mechanism of immune tolerance and provide immune homeostasis. Significantly, the binding partners of PD-1 and its associated ligands are diverse, which facilitates immunosuppression in cooperation with other immune checkpoint proteins. Accumulating evidence has demonstrated the important immunosuppressive role of the PD-1 axis in the tumor microenvironment and in autoimmune diseases. In addition, PD-1 blockades have been approved to treat various cancers, including solid tumors and hematological malignancies. Here, we provide a comprehensive review of the PD-1 pathway, focusing on the structure and expression of PD-1, programmed cell death 1 ligand 1 (PD-L1), and programmed cell death 1 ligand 2 (PD-L2); the diverse biological functions of PD-1 signaling in health and immune-related diseases (including tumor immunity, autoimmunity, infectious immunity, transplantation immunity, allergy and immune privilege); and immune-related adverse events related to PD-1 and PD-L1 inhibitors.
Journal Article
Deep Learning Approach for Vibration Signals Applications
by
Lee, Ching-Hung
,
Chen, Han-Yun
in
convolutional neural network
,
Deep learning
,
Fourier transforms
2021
This study discusses convolutional neural networks (CNNs) for vibration signals analysis, including applications in machining surface roughness estimation, bearing faults diagnosis, and tool wear detection. The one-dimensional CNNs (1DCNN) and two-dimensional CNNs (2DCNN) are applied for regression and classification applications using different types of inputs, e.g., raw signals, and time-frequency spectra images by short time Fourier transform. In the application of regression and the estimation of machining surface roughness, the 1DCNN is utilized and the corresponding CNN structure (hyper parameters) optimization is proposed by using uniform experimental design (UED), neural network, multiple regression, and particle swarm optimization. It demonstrates the effectiveness of the proposed approach to obtain a structure with better performance. In applications of classification, bearing faults and tool wear classification are carried out by vibration signals analysis and CNN. Finally, the experimental results are shown to demonstrate the effectiveness and performance of our approach.
Journal Article
The consensus from The Chinese Society of Hematology on indications, conditioning regimens and donor selection for allogeneic hematopoietic stem cell transplantation: 2021 update
by
Huang, He
,
Jiang, Er-lie
,
Lai, Yong-rong
in
Acute lymphoblastic leukemia
,
Acute myeloid leukemia
,
Algorithms
2021
The consensus recommendations in 2018 from The Chinese Society of Hematology (CSH) on indications, conditioning regimens and donor selection for allogeneic hematopoietic stem cell transplantation (allo-HSCT) facilitated the standardization of clinical practices of allo-HSCT in China and progressive integration with the world. There have been new developments since the initial publication. To integrate recent developments and further improve the consensus, a panel of experts from the CSH recently updated the consensus recommendations, which are summarized as follows: (1) there is a new algorithm for selecting appropriate donors for allo-HSCT candidates. Haploidentical donors (HIDs) are the preferred donor choice over matched sibling donors (MSDs) for patients with high-risk leukemia or elderly patients with young offspring donors in experienced centers. This replaces the previous algorithm for donor selection, which favored MSDs over HIDs. (2) Patients with refractory/relapsed lymphoblastic malignancies are now encouraged to undergo salvage treatment with novel immunotherapies prior to HSCT. (3) The consensus has been updated to reflect additional evidence for the application of allo-HSCT in specific groups of patients with hematological malignancies (intermediate-risk acute myeloid leukemia (AML), favorable-risk AML with positive minimal residual disease, and standard-risk acute lymphoblastic leukemia). (4) The consensus has been updated to reflect additional evidence for the application of HSCT in patients with nonmalignant diseases, such as severe aplastic anemia and inherited diseases. (5) The consensus has been updated to reflect additional evidence for the administration of anti-thymocyte globulin, granulocyte colony-stimulating factors and post-transplantation cyclophosphamide in HID-HSCT.
Journal Article
Linking void and interphase evolution to electrochemistry in solid-state batteries using operando X-ray tomography
by
Shevchenko, Pavel
,
Cortes, Francisco Javier Quintero
,
De Carlo, Francesco
in
639/301/299/891
,
639/301/930/2735
,
639/638/161/891
2021
Despite progress in solid-state battery engineering, our understanding of the chemo-mechanical phenomena that govern electrochemical behaviour and stability at solid–solid interfaces remains limited compared to at solid–liquid interfaces. Here, we use operando synchrotron X-ray computed microtomography to investigate the evolution of lithium/solid-state electrolyte interfaces during battery cycling, revealing how the complex interplay among void formation, interphase growth and volumetric changes determines cell behaviour. Void formation during lithium stripping is directly visualized in symmetric cells, and the loss of contact that drives current constriction at the interface between lithium and the solid-state electrolyte (Li
10
SnP
2
S
12
) is quantified and found to be the primary cause of cell failure. The interphase is found to be redox-active upon charge, and global volume changes occur owing to partial molar volume mismatches at either electrode. These results provide insight into how chemo-mechanical phenomena can affect cell performance, thus facilitating the development of solid-state batteries.
Understanding electrochemical behaviour and stability at solid–solid interfaces remains challenging. Operando synchrotron X-ray computed microtomography loss reveals that reconfiguration of interfacial contact is critical to explain cell failure during solid-state battery cycling.
Journal Article
Oral arsenic plus retinoic acid versus intravenous arsenic plus retinoic acid for non-high-risk acute promyelocytic leukaemia: a non-inferiority, randomised phase 3 trial
2018
Intravenous arsenic trioxide plus all-trans retinoic acid (ATRA) without chemotherapy is the standard of care for non-high-risk acute promyelocytic leukaemia (white blood cell count ≤10 × 109 per L), resulting in cure in more than 95% of cases. However, a pilot study of treatment with oral arsenic realgar-Indigo naturalis formula (RIF) plus ATRA without chemotherapy, which has a more convenient route of administration than the standard intravenous regimen, showed high efficacy. In this study, we compare an oral RIF plus ATRA treatment regimen with the standard intravenous arsenic trioxide plus ATRA treatment regimen in patients with non-high-risk acute promyelocytic leukaemia.
We did a multicentre, non-inferiority, open-label, randomised, controlled phase 3 trial at 14 centres in China. Patients aged 18–70 years with newly diagnosed (within 7 days) non-high-risk acute promyelocytic leukaemia, and a WHO performance status of 2 or less were eligible. Patients were randomly assigned (2:1) to receive treatment with RIF-ATRA or arsenic trioxide-ATRA as the induction and consolidation therapy. Randomisation was done centrally with permuted blocks and stratification according to trial centre and was implemented through an interactive web response system. RIF (60 mg/kg bodyweight daily in an oral divided dose) or arsenic trioxide (0·15 mg/kg daily in an intravenous dose) and ATRA (25 mg/m2 daily in an oral divided dose) were used until complete remission was achieved. The home-based consolidation therapy was RIF (60 mg/kg daily in an oral divided dose) or intravenous arsenic trioxide (0·15 mg/kg daily in an intravenous dose) in a 4-week on 4-week off regimen for four cycles and ATRA (25 mg/m2 daily in an oral divided dose) in a 2-week on 2-week off regimen for seven cycles. Patients and treating physicians were not masked to treatment allocation. The primary outcome was event-free survival at 2 years. A non-inferiority margin of −10% was used to assess non-inferiority. Primary analyses were done in a modified intention-to-treat population of all patients who received at least one dose of their assigned treatment and the per-protocol population. This study was registered with the Chinese Clinical Trial Registry (ChiCTR-TRC-13004054), and the trial is complete.
Between Feb 13, 2014, and Aug 31, 2015, 109 patients were enrolled and assigned to RIF-ATRA (n=72) or arsenic trioxide-ATRA (n=37). Three patients in the RIF-ATRA and one in the arsenic trioxide-ATRA did not receive their assigned treatment. After a median follow-up of 32 months (IQR 27–36), 67 (97%) of 69 patients in the RIF-ATRA group and 34 (94%) of 36 in the arsenic trioxide-ATRA group had achieved 2-year event-free survival in the modified intention-to-treat population. The percentage difference in event-free survival was 2·7% (95% CI, −5·8 to 11·1). The lower limit of the 95% CI for the difference in event-free survival was greater than the −10% non-inferiority margin, confirming non-inferiority (p=0·0017). Non-inferiority was also confirmed in the per-protocol population. During induction therapy, grade 3–4 hepatic toxic effects (ie, increased liver aspartate aminotransferase or alanine transaminase concentrations) were reported in six (9%) of 69 patients in the RIF-ATRA group versus five (14%) of 36 patients in the arsenic trioxide-ATRA group; grade 3–4 infection was reported in 15 (23%) of 64 versus 15 (42%) of 36 patients. Two patients in the arsenic trioxide-ATRA group died during induction therapy (one from haemorrhage and one from thrombocytopenia).
Oral RIF plus ATRA is not inferior to intravenous arsenic trioxide plus ATRA for the treatment of patients with non-high-risk acute promyelocytic leukaemia. This study suggests that a completely oral, chemotherapy-free model might be an alternative to the standard intravenous treatment for patients with non-high-risk acute promyelocytic leukaemia.
Foundation for innovative research group of the National Natural Science Foundation of China, the Beijing Municipal Science and Technology Commission, the National Key R&D Program of China, and the National Natural Science Foundation of China.
Journal Article
Real-Time Indoor Visible Light Positioning (VLP) Using Long Short Term Memory Neural Network (LSTM-NN) with Principal Component Analysis (PCA)
by
Shu, Yueh-Han
,
Lin, Yuan-Zeng
,
Chang, Yun-Han
in
Accuracy
,
Artificial intelligence
,
Experiments
2024
New applications such as augmented reality/virtual reality (AR/VR), Internet-of-Things (IOT), autonomous mobile robot (AMR) services, etc., require high reliability and high accuracy real-time positioning and tracking of persons and devices in indoor areas. Among the different visible-light-positioning (VLP) schemes, such as proximity, time-of-arrival (TOA), time-difference-of-arrival (TDOA), angle-of-arrival (AOA), and received-signal-strength (RSS), the RSS scheme is relatively easy to implement. Among these VLP methods, the RSS method is simple and efficient. As the received optical power has an inverse relationship with the distance between the LED transmitter (Tx) and the photodiode (PD) receiver (Rx), position information can be estimated by studying the received optical power from different Txs. In this work, we propose and experimentally demonstrate a real-time VLP system utilizing long short-term memory neural network (LSTM-NN) with principal component analysis (PCA) to mitigate high positioning error, particularly at the positioning unit cell boundaries. Experimental results show that in a positioning unit cell of 100 × 100 × 250 cm3, the average positioning error is 5.912 cm when using LSTM-NN only. By utilizing the PCA, we can observe that the positioning accuracy can be significantly enhanced to 1.806 cm, particularly at the unit cell boundaries and cell corners, showing a positioning error reduction of 69.45%. In the cumulative distribution function (CDF) measurements, when using only the LSTM-NN model, the positioning error of 95% of the experimental data is >15 cm; while using the LSTM-NN with PCA model, the error is reduced to <5 cm. In addition, we also experimentally demonstrate that the proposed real-time VLP system can also be used to predict the direction and the trajectory of the moving Rx.
Journal Article
Mucoadhesive, antioxidant, and lubricant catechol-functionalized poly(phosphobetaine) as biomaterial nanotherapeutics for treating ocular dryness
by
Su, Yun-Han
,
Lai, Jui-Yang
,
Huang, Chun-Jen
in
Animals
,
Anti-Inflammatory Agents
,
Antioxidants
2024
Dry eye disease (DED) is associated with ocular hyperosmolarity and inflammation. The marketed topical eye drops for DED treatment often lack bioavailability and precorneal residence time. In this study, we investigated catechol-functionalized polyzwitterion p(MPC-
co
-DMA), composed of 2-methacryloyloxyethyl phosphorylcholine (MPC) and dopamine methacrylamide (DMA) monomers, as potential topical nanotherapeutics for DED. The copolymers were synthesized via random free-radical copolymerization, producing different proportions of catecholic functionalization. All as-prepared polymer compositions displayed good ocular biocompatibility. At a feeding ratio of 1:1, p(MPC
1
-
co
-DMA
1
) can facilitate a robust mucoadhesion via Michael addition and/or Schiff base reaction, thus prolonging ocular residence time after 4 days of topical instillation. The hydration lubrication of MPC and radical-scavenging DMA endow the nano-agent to ease tear-film hyperosmolarity and corneal inflammation. A single dose of p(MPC
1
-
co
-DMA
1
) (1 mg/mL) after 4 days post-instillation can protect the cornea against reactive oxygen species, inhibiting cell apoptosis and the over-expression of pro-inflammatory factors (IL-6 and TNF-α). In clinical assessment, DED-induced rabbit eyes receiving p(MPC
1
-
co
-DMA
1
) could increase lacrimal fluid secretion by 5-fold higher than cyclosporine A. The catechol-functionalized polyzwitterion with enhanced lubricity, mucoadhesion, and anti-oxidation/anti-inflammation properties has shown high promise as a bioactive eye drop formulation for treating DED.
Graphical abstract
Journal Article
A systematic analysis of the PARP protein family identifies new functions critical for cell physiology
by
Huang, Yun-Han
,
Todorova, Tanya
,
Chesarone-Cataldo, Melissa
in
631/80/458/2389
,
Adenosine diphosphate
,
Adhesion
2013
The poly(ADP-ribose) polymerase (PARP) family of proteins use NAD
+
as their substrate to modify acceptor proteins with ADP-ribose modifications. The function of most PARPs under physiological conditions is unknown. Here, to better understand this protein family, we systematically analyse the cell cycle localization of each PARP and of poly(ADP-ribose), a product of PARP activity, then identify the knockdown phenotype of each protein and perform secondary assays to elucidate function. We show that most PARPs are cytoplasmic, identify cell cycle differences in the ratio of nuclear to cytoplasmic poly(ADP-ribose) and identify four phenotypic classes of PARP function. These include the regulation of membrane structures, cell viability, cell division and the actin cytoskeleton. Further analysis of PARP14 shows that it is a component of focal adhesion complexes required for proper cell motility and focal adhesion function. In total, we show that PARP proteins are critical regulators of eukaryotic physiology.
The poly(ADP-ribose) polymerase (PARP) family includes 17 proteins in humans, many of which have no known function. Vyas
et al.
systematically characterize the localization and function of each human PARP and identify PARP14 as a regulator of focal adhesions.
Journal Article
Regulation of Photomorphogenic Development by Plant Phytochromes
by
Hoang, Quyen T. N.
,
Kim, Jeong-Il
,
Tripathi, Sharanya
in
Abscisic acid
,
Chloroplasts
,
Gene expression
2019
Photomorphogenesis and skotomorphogenesis are two key events that control plant development, from seed germination to flowering and senescence. A group of wavelength-specific photoreceptors, E3 ubiquitin ligases, and various transcription factors work together to regulate these two critical processes. Phytochromes are the main photoreceptors in plants for perceiving red/far-red light and transducing the light signals to downstream factors that regulate the gene expression network for photomorphogenic development. In this review, we highlight key developmental stages in the life cycle of plants and how phytochromes and other components in the phytochrome signaling pathway play roles in plant growth and development.
Journal Article
Vertical Shear Instability in Thermally Stratified Protoplanetary Disks. II. Hydrodynamic Simulations and Observability
by
Bae, Jaehan
,
Yun, Han-Gyeol
,
Han, Cheongho
in
Accretion disks
,
Astronomy
,
Kelvin-Helmholtz instability
2025
We conduct 3D hydrodynamic simulations to investigate the nonlinear outcomes and observability of vertical shear instability (VSI) in protoplanetary disks. Our models include both vertically isothermal and thermally stratified disks, with the latter representing realistic conditions featuring a hotter atmosphere above the midplane. We find that the VSI grows more rapidly and becomes stronger in thermally stratified disks due to enhanced shear, resulting in higher levels of turbulence. At saturation, the turbulence stress reaches αRϕ ≳ 10−3, more than 1 order of magnitude stronger than the isothermal case. The saturated turbulence is more pronounced near the disk surfaces than at the midplane. On synthetic velocity residual maps, obtained by subtracting the Keplerian rotational velocity, perturbations driven by the VSI manifest as axisymmetric rings in isothermal disks and as ring segments in thermally stratified disks. The latter are visible at disk inclinations as high as 45° in thermally stratified disks. The amplitudes of these residual velocities range from ∼50 to ∼100 m s−1 at a 20° inclination, with larger values corresponding to greater thermal stratification. The magnitude of the observed velocity residual increases with the optical depth of the tracer used, as optically thick lines probe the regions near the disk surfaces.
Journal Article