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"Hara, Y"
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Hill‐Terrain Modulation of Inland Snow‐Cloud Microphysics: Polarimetric Radar and Balloon‐Borne Particle Imaging Radiosonde Observations
Snow‐cloud microphysics over inland hills partly resembles that over high mountains, yet exhibits notable differences. During 2024–2025 winter, coordinated observations in Tokamachi City, Niigata Prefecture, Japan, were conducted using four launches of a newly developed balloon‐borne particle‐imaging radiosonde (Rainscope) together with dual X‐band polarimetric radars deployed on both sides of Uonuma Hill (approximately 700 m ASL). Snow‐particle growth processes differed markedly depending on whether airflow passed over or was blocked by hills. Graupel formation is influenced by multiple mechanisms: advection from coastal convective clouds, orographic ascent along slopes, mountain‐wave propagation leeward of the hills, and seeder‐feeder interactions upstream. The findings demonstrate that even modest inland terrain can modulate snow‐cloud microphysics substantially, highlighting the complex role of hills in winter precipitation.
Journal Article
ATP regulation in bioproduction
by
Kondo, Akihiko
,
Hara, Kiyotaka Y.
in
Added Value Chemicals and Biofuels
,
Adenosine Triphosphate - metabolism
,
Applied Microbiology
2015
Adenosine-5′-triphosphate (ATP) is consumed as a biological energy source by many intracellular reactions. Thus, the intracellular ATP supply is required to maintain cellular homeostasis. The dependence on the intracellular ATP supply is a critical factor in bioproduction by cell factories. Recent studies have shown that changing the ATP supply is critical for improving product yields. In this review, we summarize the recent challenges faced by researchers engaged in the development of engineered cell factories, including the maintenance of a large ATP supply and the production of cell factories. The strategies used to enhance ATP supply are categorized as follows: addition of energy substrates, controlling pH, metabolic engineering of ATP-generating or ATP-consuming pathways, and controlling reactions of the respiratory chain. An enhanced ATP supply generated using these strategies improves target production through increases in resource uptake, cell growth, biosynthesis, export of products, and tolerance to toxic compounds.
Journal Article
Engineering yeast with a light-driven proton pump system in the vacuolar membrane
by
Tamura, Kentaro
,
Hara, Kiyotaka Y.
,
Kikukawa, Hiroshi
in
Acidification
,
Adenosine triphosphatase
,
Adenosine Triphosphate - metabolism
2024
Background
The supply of ATP is a limiting factor for cellular metabolism. Therefore, cell factories require a sufficient ATP supply to drive metabolism for efficient bioproduction. In the current study, a light-driven proton pump in the vacuolar membrane was constructed in yeast to reduce the ATP consumption required by V-ATPase to maintain the acidification of the vacuoles and increase the intracellular ATP supply for bioproduction.
Results
Delta rhodopsin (dR), a microbial light-driven proton-pumping rhodopsin from
Haloterrigena turkmenica
, was expressed and localized in the vacuolar membrane of
Saccharomyces cerevisiae
by conjugation with a vacuolar membrane-localized protein. Vacuoles with dR were isolated from
S. cerevisiae
, and the light-driven proton pumping activity was evaluated based on the pH change outside the vacuoles. A light-induced increase in the intracellular ATP content was observed in yeast harboring vacuoles with dR.
Conclusions
Yeast harboring the light-driven proton pump in the vacuolar membrane developed in this study are a potential optoenergetic cell factory suitable for various bioproduction applications.
Journal Article
A Method of Solubilizing and Concentrating Astaxanthin and Other Carotenoids
by
Hiroshi Kikukawa
,
Yoko Hirono-Hara
,
Kiyotaka Y. Hara
in
Animals
,
Aquatic Organisms
,
Aqueous solutions
2021
The valuable marine carotenoid, astaxanthin, is used in supplements, medicines and cosmetics. In this study, crustacyanin, an astaxanthin-binding protein, was used to solubilize and concentrate astaxanthin. The recombinant crustacyanin of European lobster spontaneously formed an inclusion body when it was over-expressed in Escherichia coli. In this study, fusing the NusA-tag to the crustacyanin subunits made it possible to express in a soluble fraction and solubilize astaxanthin in aqueous solution. By cutting off the NusA-tag, the crustacyanin subunits generated the pure insoluble form, and captured and concentrated astaxanthin. Overall, the attaching and releasing NusA-tag method has the potential to supply solubilized carotenoids in aqueous solution and concentrated carotenoids, respectively.
Journal Article
5-Aminolevulinic acid fermentation using engineered Saccharomyces cerevisiae
by
Watanabe, Shigeyuki
,
Kondo, Akihiko
,
Morikawa, Kana
in
5′-Aminolevulinic acid
,
Aconitate Hydratase - genetics
,
Aconitate Hydratase - metabolism
2019
Background
5′-Aminolevulinic acid (ALA) is widely used in the pharmaceutical industry, healthcare, and food production, and is a substrate for the biosynthesis of heme, which is required for respiration and photosynthesis. Enhancement of ALA biosynthesis has never been developed in
Saccharomyces cerevisiae
, which is a well-known model microorganism used for bioproduction of many value-added compounds.
Results
We demonstrated that metabolic engineering significantly improved ALA production in
S. cerevisiae
. First, we found that overexpression of
HEM1
, which encodes ALA synthetase, increased ALA production. Furthermore, addition of an optimal amount of glycine, a substrate for ALA biosynthesis, or levulinic acid, an inhibitor of ALA dehydrogenase, effectively increased ALA production. Next, we developed an assay for multiple metabolites including ALA and found that aconitase, encoded by
ACO1
and
ACO2
, is the rate-limiting enzyme of ALA biosynthesis when sufficient glycine is supplied. Overexpression of
ACO2
further enhanced ALA production in
S. cerevisiae
overexpressing
HEM1
.
Conclusions
In this study, ALA production in
S. cerevisiae
was enhanced by metabolic engineering. This study also shows a strategy to identify the rate-limiting step of a target synthetic pathway by assay for multiple metabolites alongside the target product. This strategy can be applied to improve production of other valuable products in the well-studied and well-industrialized microorganism
S. cerevisiae
.
Journal Article
Carotenoid Nostoxanthin Production by Sphingomonas sp. SG73 Isolated from Deep Sea Sediment
by
Miyazaki, Masayuki
,
Maoka, Takashi
,
Murofushi, Keita
in
Absorption spectroscopy
,
Analytical methods
,
antioxidant activity
2021
Carotenoids are used commercially for dietary supplements, cosmetics, and pharmaceuticals because of their antioxidant activity. In this study, colored microorganisms were isolated from deep sea sediment that had been collected from Suruga Bay, Shizuoka, Japan. One strain was found to be a pure yellow carotenoid producer, and the strain was identified as Sphingomonas sp. (Proteobacteria) by 16S rRNA gene sequence analysis; members of this genus are commonly isolated from air, the human body, and marine environments. The carotenoid was identified as nostoxanthin ((2,3,2′,3′)-β,β-carotene-2,3,2′,3′-tetrol) by mass spectrometry (MS), MS/MS, and ultraviolet-visible absorption spectroscopy (UV-Vis). Nostoxanthin is a poly-hydroxy yellow carotenoid isolated from some photosynthetic bacteria, including some species of Cyanobacteria. The strain Sphingomonas sp. SG73 produced highly pure nostoxanthin of approximately 97% (area%) of the total carotenoid production, and the strain was halophilic and tolerant to 1.5-fold higher salt concentration as compared with seawater. When grown in 1.8% artificial sea salt, nostoxanthin production increased by 2.5-fold as compared with production without artificial sea salt. These results indicate that Sphingomonas sp. SG73 is an efficient producer of nostoxanthin, and the strain is ideal for carotenoid production using marine water because of its compatibility with sea salt.
Journal Article
Development of astaxanthin production from citrus peel extract using Xanthophyllomyces dendrorhous
by
Hara, Kiyotaka Y.
,
Kikukawa, Hiroshi
,
Wakabayashi, Keiji
in
Animals
,
Aquatic Pollution
,
Arabinose
2021
Developing a use for the inedible parts of citrus, mainly peel, would have great environmental and economic benefits worldwide. Astaxanthin is a value-added fine chemical that affects fish pigmentation and has recently been used in healthcare products for humans, resulting in an increased demand. This study aimed to produce astaxanthin from a citrus, ponkan, peel extract using the yeast
Xanthophyllomyces dendrorhous
, which has the ability to use both pentose and hexose. Feeding on only ponkan peel extract enhanced
X
.
dendrorhous
growth and the concomitant astaxanthin production. Additionally, we determined that pectin and its arabinose content were the main substrate and sole carbon source, respectively, for
X. dendrorhous
growth and astaxanthin production. Thus, ponkan peel extract could become a valuable resource for
X. dendrorhous
–based astaxanthin production. Using citrus peel extract for microbial fermentation will allow the development of processes that produce value-added chemicals from agricultural byproducts.
Journal Article
Transporter engineering in biomass utilization by yeast
by
Kobayashi, Jyumpei
,
Ishii, Jun
,
Kondo, Akihiko
in
Biological Transport
,
Biomass
,
Carbohydrate Metabolism
2017
Abstract
Biomass resources are attractive carbon sources for bioproduction because of their sustainability. Many studies have been performed using biomass resources to produce sugars as carbon sources for cell factories. Expression of biomass hydrolyzing enzymes in cell factories is an important approach for constructing biomass-utilizing bioprocesses because external addition of these enzymes is expensive. In particular, yeasts have been extensively engineered to be cell factories that directly utilize biomass because of their manageable responses to many genetic engineering tools, such as gene expression, deletion and editing. Biomass utilizing bioprocesses have also been developed using these genetic engineering tools to construct metabolic pathways. However, sugar input and product output from these cells are critical factors for improving bioproduction along with biomass utilization and metabolic pathways. Transporters are key components for efficient input and output activities. In this review, we focus on transporter engineering in yeast to enhance bioproduction from biomass resources.
The focus in this review is engineering of transporters involved in sugar input and product output from yeast cell factories for improving bioproduction along with biomass utilization and metabolic pathways.
Journal Article
Electron acceleration by wave turbulence in a magnetized plasma
2018
Astrophysical shocks are commonly revealed by the non-thermal emission of energetic electrons accelerated in situ1–3. Strong shocks are expected to accelerate particles to very high energies4–6; however, they require a source of particles with velocities fast enough to permit multiple shock crossings. While the resulting diffusive shock acceleration4 process can account for observations, the kinetic physics regulating the continuous injection of non-thermal particles is not well understood. Indeed, this injection problem is particularly acute for electrons, which rely on high-frequency plasma fluctuations to raise them above the thermal pool7,8. Here we show, using laboratory laser-produced shock experiments, that, in the presence of a strong magnetic field, significant electron pre-heating is achieved. We demonstrate that the key mechanism in producing these energetic electrons is through the generation of lower-hybrid turbulence via shock-reflected ions. Our experimental results are analogous to many astrophysical systems, including the interaction of a comet with the solar wind9, a setting where electron acceleration via lower-hybrid waves is possible.
Journal Article
Metabolic engineering of the l-serine biosynthetic pathway improves glutathione production in Saccharomyces cerevisiae
by
Sasaki, Daisuke
,
Kobayashi, Jyumpei
,
Kondo, Akihiko
in
Amino acids
,
Applied Microbiology
,
Biomass
2022
Background
Glutathione is a valuable tri-peptide that is industrially produced by fermentation using the yeast
Saccharomyces cerevisiae
, and is widely used in the pharmaceutical, food, and cosmetic industries. It has been reported that addition of
l
-serine (
l
-Ser) is effective at increasing the intracellular glutathione content because
l
-Ser is the common precursor of
l
-cysteine (
l
-Cys) and glycine (Gly) which are substrates for glutathione biosynthesis. Therefore, we tried to enhance the
l
-Ser biosynthetic pathway in
S
.
cerevisiae
for improved glutathione production.
Results
The volumetric glutathione production of recombinant strains individually overexpressing
SER2
,
SER1
,
SER3
, and
SER33
involved in
l
-Ser biosynthesis at 48 h cultivation was increased 1.3, 1.4, 1.9, and 1.9-fold, respectively, compared with that of the host GCI strain, which overexpresses genes involved in glutathione biosynthesis. We further examined simultaneous overexpression of
SHM2
and/or
CYS4
genes involved in Gly and
l
-Cys biosynthesis, respectively, using recombinant GCI strain overexpressing
SER3
and
SER33
as hosts. As a result, GCI overexpressing
SER3
,
SHM2
, and
CYS4
showed the highest volumetric glutathione production (64.0 ± 4.9 mg/L) at 48 h cultivation, and this value is about 2.5-fold higher than that of the control strain.
Conclusions
This study first revealed that engineering of
l
-Ser and Gly biosynthetic pathway are useful strategies for fermentative glutathione production by
S. cerevisiase
.
Journal Article