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"Hassan Khalil"
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Type I Collagen as an Extracellular Matrix for the In Vitro Growth of Human Small Intestinal Epithelium
We previously reported in vitro maintenance and proliferation of human small intestinal epithelium using Matrigel, a proprietary basement membrane product. There are concerns over the applicability of Matrigel-based methods for future human therapies. We investigated type I collagen as an alternative for the culture of human intestinal epithelial cells.
Human small intestine was procured from fresh surgical pathology specimens. Small intestinal crypts were isolated using EDTA chelation. Intestinal subepithelial myofibroblasts were isolated from a pediatric sample and expanded in vitro. After suspension in Matrigel or type I collagen gel, crypts were co-cultured above a confluent layer of myofibroblasts. Crypts were also grown in monoculture with exposure to myofibroblast conditioned media; these were subsequently sub-cultured in vitro and expanded with a 1∶2 split ratio. Cultures were assessed with light microscopy, RT-PCR, histology, and immunohistochemistry.
Collagen supported viable human epithelium in vitro for at least one month in primary culture. Sub-cultured epithelium expanded through 12 passages over 60 days. Histologic sections revealed polarized columnar cells, with apical brush borders and basolaterally located nuclei. Collagen-based cultures gave rise to monolayer epithelial sheets at the gel-liquid interface, which were not observed with Matrigel. Immunohistochemical staining identified markers of differentiated intestinal epithelium and myofibroblasts. RT-PCR demonstrated expression of α-smooth muscle actin and vimentin in myofibroblasts and E-Cadherin, CDX2, villin 1, intestinal alkaline phosphatase, chromogranin A, lysozyme, and Lgr5 in epithelial cells. These markers were maintained through several passages.
Type I collagen gel supports long-term in vitro maintenance and expansion of fully elaborated human intestinal epithelium. Collagen-based methods yield familiar enteroid structures as well as a new pattern of sheet-like growth, and they eliminate the need for Matrigel for in vitro human intestinal epithelial growth. Future research is required to further develop this cell culture system for tissue engineering applications.
Journal Article
3D-MRI Brain Tumor Detection Model Using Modified Version of Level Set Segmentation Based on Dragonfly Algorithm
Accurate brain tumor segmentation from 3D Magnetic Resonance Imaging (3D-MRI) is an important method for obtaining information required for diagnosis and disease therapy planning. Variation in the brain tumor’s size, structure, and form is one of the main challenges in tumor segmentation, and selecting the initial contour plays a significant role in reducing the segmentation error and the number of iterations in the level set method. To overcome this issue, this paper suggests a two-step dragonfly algorithm (DA) clustering technique to extract initial contour points accurately. The brain is extracted from the head in the preprocessing step, then tumor edges are extracted using the two-step DA, and these extracted edges are used as an initial contour for the MRI sequence. Lastly, the tumor region is extracted from all volume slices using a level set segmentation method. The results of applying the proposed technique on 3D-MRI images from the multimodal brain tumor segmentation challenge (BRATS) 2017 dataset show that the proposed method for brain tumor segmentation is comparable to the state-of-the-art methods.
Journal Article
Towards Optimizing Hybrid Movie Recommender Systems
Research in movie recommendation systems addresses several specific challenges to enhance the accuracy, relevance, and user satisfaction of the recommendations. Some of the key challenges include sparsity of data and cold start for new movies. Integrating collaborative filtering and content-based filtering in a seamless and effective manner also poses another key challenge. This article explores strategies for optimizing hybrid recommendation systems to leverage the strengths of each approach. By addressing these three key challenges, we aim to advance the state of movie recommendation systems, providing more effective and user-centric solutions that cater to the diverse preferences and needs of movie enthusiasts. Similarity-based models (memory-based) combined with matrix factorization-based models (model-based) were used to generate an optimal hybrid movie recommendation model. We evaluated the models using a large dataset of movies and we showed that the proposed model is both efficient and scalable.
Journal Article
Influence of dietary chitosan-oligosaccharides supplementation on productive and reproductive performance of laying hens
This experiment aimed to ascertain whether adding chitosan-oligosaccharides (COS) to the diet will affect Mandarah laying hens’ productivity and reproductive efficiency. At the age of 34 weeks, 120 laying hens and 12 cocks of the Mandarah chicken strain were separated into four groups, each consisting of 30 hens and three cocks. The 1st group served as a control group, receiving only a basic diet. The 2nd, 3rd, and 4th experimental groups received 0.1, 0.2, and 0.5 g/kg of chitosan-oligosaccharides as an addition to the base diet, respectively. According to the findings of this study, the majority of the analyzed attributes differed significantly between treatment groups. Comparing the COS-treated birds to the control birds, the COS-treated birds significantly increased egg production, improved feed conversion, Haugh unit score, shell thickness, fertility, hatchability, ovary weight, and the number of yellow ovarian follicles as well as blood estradiol-17β (E
) and testosterone concentrations. Furthermore, compared to the other treated groups, introducing COS at a level of 0.1 g/kg diet resulted in the best laying rate, egg mass, and feed conversion. The highest percentage of fertility, hatchability of hatching eggs, ovary weight, number of yellow ovarian follicles, and serum E2 concentration was also found in birds fed COS at a dose of 0.2 g/kg feed. In addition, compared to the control diet, COS treatment at 0.1, 0.2, and 0.5 g/kg enhanced relative economic efficiency by 464.43, 457.41, and 352.75%, respectively. It is concluded that chitosan improves economic efficiency, reproductive performance, productivity in laying hens, and overall health when used at 0.1 g/kg diet.
Journal Article
Intestinal epithelial replacement by transplantation of cultured murine and human cells into the small intestine
Adult intestinal epithelial stem cells are a promising resource for treatment of intestinal epithelial disorders that cause intestinal failure and for intestinal tissue engineering. We developed two different animal models to study the implantation of cultured murine and human intestinal epithelial cells in the less differentiated \"spheroid\" state and the more differentiated \"enteroid\" state into the denuded small intestine of mice. Engraftment of donor cells could not be achieved while the recipient intestine remained in continuity. However, we were able to demonstrate successful implantation of murine and human epithelial cells when the graft segment was in a bypassed loop of jejunum. Implantation of donor cells occurred in a random fashion in villus and crypt areas. Engraftment was observed in 75% of recipients for murine and 36% of recipients for human cells. Engrafted spheroid cells differentiated into the full complement of intestinal epithelial cells. These findings demonstrate for the first time successful engraftment into the small bowel which is optimized in a bypassed loop surgical model.
Journal Article
Morphology control of nickel nanoparticles prepared in situ within silica aerogels produced by novel ambient pressure drying
Silica aerogels are low density solids with high surface area and high porosity which are ideal supports for catalyst materials. The main challenge in aerogel production is the drying process, which must remove liquid from the pores of the wet gel while maintaining the solid network. In this work, the synthesis of silica aerogels and nickel-doped silica aerogels by a low energy budget process is demonstrated. Silica aerogels are produced by ambient drying using ammonium bicarbonate, rather than a conventional low surface tension solvent. Heating dissociates the ammonium bicarbonate, so generating CO
2
and NH
3
within the pores of the wet gel which prevents pore collapse during drying. Nickel-doped aerogels were produced by reducing nickel ions within pre-synthesised silica aerogels. The morphology of the resulting nickel particles—spheres, wires and chains—could be controlled through an appropriate choice of synthesis conditions. Materials were characterized using nitrogen adsorption/desorption isotherms, scanning electron microscopy, Fourier-transform infrared spectroscopy, thermogravimetric analysis and X-ray diffraction. The surface area of undoped aerogel is found to increase with the concentration of ammonium bicarbonate salts from 360 to 530 m
2
g
−1
, and that of nickel-doped silica aerogel varies from 240 to 310 m
2
g
−1
with nickel doping conditions.
Journal Article
Neuropsychiatric symptoms in Parkinson’s disease: review of data from the Arab world
Neuropsychiatric symptoms in Parkinson’s disease (PD) are common, underrecognized, and impact patients’ quality of life. Research around this topic is scarce in the Arab world. The aim of this comprehensive narrative review was to examine available evidence and discusses its strengths and limitations. The PubMed and Embase databases were searched using relevant keywords for studies published between 2000 and 2023. A total of 10 epidemiological and three assessment tool validation studies of neuropsychiatric symptoms in PD, conducted in the 22 Arab countries, were included. Only four Arab countries contributed to the 10 epidemiological studies found. Egypt provided the largest number of patients. Prevalence rates of neuropsychiatric symptoms in PD were heterogenous. Three studies relied on the Non-Motor Symptom Scale to estimate prevalence. Three studies used validated screening tools for dementia. Five studies used specific screening tools for depression, while two used the Diagnostic and Statistical Manual of mental disorders, fourth edition (DSM-IV) diagnostic criteria for depression. No appropriate and validated tool is available to assess for apathy. The generalizability of the findings is limited and recommendations for future studies are provided.
Journal Article
The role of vasculature and angiogenesis in respiratory diseases
In European countries, nearly 10% of all hospital admissions are related to respiratory diseases, mainly chronic life-threatening diseases such as COPD, pulmonary hypertension, IPF or lung cancer. The contribution of blood vessels and angiogenesis to lung regeneration, remodeling and disease progression has been increasingly appreciated. The vascular supply of the lung shows the peculiarity of dual perfusion of the pulmonary circulation (vasa publica), which maintains a functional blood-gas barrier, and the bronchial circulation (vasa privata), which reveals a profiled capacity for angiogenesis (namely intussusceptive and sprouting angiogenesis) and alveolar-vascular remodeling by the recruitment of endothelial precursor cells. The aim of this review is to outline the importance of vascular remodeling and angiogenesis in a variety of non-neoplastic and neoplastic acute and chronic respiratory diseases such as lung infection, COPD, lung fibrosis, pulmonary hypertension and lung cancer.
Journal Article
Synthesis of sodium silicate-based silica aerogels with graphene oxide by ambient pressure drying
Here we study how graphene oxide affects silica aerogels and their physical and mechanical properties by examining volume shrinkage, pore volume, surface area and compressive strength of these composite aerogels. Composite aerogels were made through adding different amount of graphene oxide (GO) to sodium silicate precursor by using ambient pressure drying method. Additionally, the chemical composition of the composite aerogels was determined using X-ray diffraction (XRD) and Fourier transform infrared (FTIR) spectroscopy. A rougher structure was observed when the GO loading increased and the characteristic peak of GO in XRD disappeared due to the random distribution of GO within the silica matrix. FTIR spectrum of composite aerogels shows that the relative intensity of silanol groups on the silica matrix have downward tendency with the addition of GO. The specific surface area had maxima with the addition of 0.01 wt% GO surface area to 578 m
2
/g. The mechanical strength of aerogels was increased, with the loading of GO from 0.0 wt% to 0.2 wt%, and the compressive modulus increased from 0.02 MPa to 0.22 MPa.
Journal Article