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Coexistence theories develop rapidly at the ecology forefront, outpacing their experimental testing. I discuss the reasons for this gap, call on interdisciplinary researchers to construct a road map for coexistence research, and recommend the actions that should be implemented therein. Coexistence theories outpace their experimental testing. I argue that this imbalance results from a combination of interdisciplinary gaps, a disparity in research approaches, and the limited accessibility of the theory to experimentalists. I call on interdisciplinary researchers to construct a road map for coexistence research, recommend the actions that should be implemented therein, and illustrate how multiple mechanisms can be integrated under the same coexistence terms, thus constructing a research landscape that can create uniformity in their experimental designs.

The continuously high incidence of some endosymbionts in arthropods despite potential conflicts with their hosts is often explained by obligatory relationships, in which the host is fully dependent on its endosymbiont, fitness advantages conferred on hosts by facultative endosymbionts, or reproductive manipulation of hosts by endosymbionts (typically facultative). Yet continuously endosymbiont high incidence is sometimes observed without clear evidence supporting any of these mechanisms. This situation could potentially be explained by the presence of several coinfecting strains of the same endosymbiont species, each affecting the host differently such that their effects counteract one another when studied collectively. Here, we investigated Wolbachia endosymbionts of fleas, which stably persist in high loads in all females, with no indication that any of the above mechanisms explain their continuously high incidence. We sequenced fleas and identified two Wolbachia strains, designated as w Sc1 and w Sc2. We then correlated the strain composition in fleas with measures of their reproductive success. We found that fleas with high w Sc1 and low w Sc2 loads had a higher reproductive success than fleas that had high loads of both strains, low loads of both strains, or no Wolbachia , suggesting that w Sc1 may provide a direct fitness advantage to their hosts. Conversely, the number of males and total offspring was negatively correlated with w Sc2 levels, supporting male killing. Our research demonstrates that endosymbionts’ continuously high incidence may persist through intricate relationships in nature.

Variation in infection dynamics across host species can profoundly influence parasite epidemiology, ecology, and evolution. However, because experiments involving multiple hosts and multiple parasite species that capture the full infection dynamics within hosts are rare, the underlying mechanisms of host heterogeneity effects across different parasite species remain largely unknown. We dissected the specific roles of host and pathogen effects in shaping within-host infection dynamics using a model system comprising three coexisting rodent species from Israel’s northwestern Negev Desert and their predominant bacterial pathogens, Bartonella krasnovii A2 and Mycoplasma haemomuris -like bacterium. To test whether the effects of host species heterogeneity on parasite dynamics mainly derive from host trait variation (“host trait variation hypothesis”) or rather reflect a unique host-parasite interaction (“specific host-parasite interaction” hypotheses), we inoculated rodents of the three species ( Gerbillus andersoni , G. pyramidum , and G. gerbillus ) with either Bartonella or Mycoplasma and compared their infection dynamics during primary infection and upon reinfection. According to the “host trait variation” hypothesis, host heterogeneity effects would be consistent across parasite species. Supporting this hypothesis, both bacterial pathogens exhibited reduced performance in G. gerbillus compared to the other rodent species. However, consistent with the alternative “specific host-parasite interaction” hypothesis, all other aspects of the infection dynamics of these two pathogens exhibited varying trends across the three hosts, indicating the uniqueness of each pathogen-host interaction. Our findings support the notion that the variability in infection dynamics is not solely attributable to host heterogeneity, but rather emerges from the interplay between specific host characteristics and parasite traits. We discuss potential directions for future research to deepen our understanding of within-host dynamics in multispecies communities. We stress the necessity of analyzing each distinct host-parasite interaction independently when making inferences about community patterns based on infection dynamics within hosts until more experimental data on natural systems are accumulated.

Background Pathogens face strong selection from host immune responses, yet many host populations support pervasive pathogen populations. We investigated this puzzle in a model system of Bartonella and rodents from Israel’s northwestern Negev Desert. We chose to study this system because, in this region, 75–100% of rodents are infected with Bartonella at any given time, despite an efficient immunological response. In this region, Bartonella species circulate in three rodent species, and we tested the hypothesis that at least one of these hosts exhibits a waning immune response to Bartonella , which allows reinfections. Methods We inoculated captive animals of all three rodent species with the same Bartonella strain, and we quantified the bacterial dynamics and Bartonella -specific immunoglobulin G antibody kinetics over a period of 139 days after the primary inoculation, and then for 60 days following reinoculation with the same strain. Results Contrary to our hypothesis, we found a strong, long-lasting immunoglobulin G antibody response, with protective immunological memory in all three rodent species. That response prevented reinfection upon exposure of the rodents to the same Bartonella strain. Conclusions This study constitutes an initial step toward understanding how the interplay between traits of Bartonella and their hosts influences the epidemiological dynamics of these pathogens in nature. Graphical Abstract

Background The parasite composition of wild host individuals often impacts their behavior and physiology, and the transmission dynamics of pathogenic species thereby determines disease risk in natural communities. Yet, the determinants of parasite composition in natural communities are still obscure. In particular, three fundamental questions remain open: (1) what are the relative roles of host and environmental characteristics compared with direct interactions between parasites in determining the community composition of parasites? (2) do these determinants affect parasites belonging to the same guild and those belonging to different guilds in similar manners? and (3) can cross-sectional and longitudinal analyses work interchangeably in detecting community determinants? Our study was designed to answer these three questions in a natural community of rodents and their fleas, ticks, and two vector-borne bacteria. Methods We sampled a natural population of Gerbillus andersoni rodents and their blood-associated parasites on two occasions. By combining path analysis and model selection approaches, we then explored multiple direct and indirect paths that connect (i) the environmental and host-related characteristics to the infection probability of a host by each of the four parasite species, and (ii) the infection probabilities of the four species by each other. Results Our results suggest that the majority of paths shaping the blood-associated communities are indirect, mostly determined by host characteristics and not by interspecific interactions or environmental conditions. The exact effects of host characteristics on infection probability by a given parasite depend on its life history and on the method of sampling, in which the cross-sectional and longitudinal methods are complementary. Conclusions Despite the awareness of the need of ecological investigations into natural host-vector-parasite communities in light of the emergence and re-emergence of vector-borne diseases, we lack sampling methods that are both practical and reliable. Here we illustrated how comprehensive patterns can be revealed from observational data by applying path analysis and model selection approaches and combining cross-sectional and longitudinal analyses. By employing this combined approach on blood-associated parasites, we were able to distinguish between direct and indirect effects and to predict the causal relationships between host-related characteristics and the parasite composition over time and space. We concluded that direct interactions within the community play only a minor role in determining community composition relative to host characteristics and the life history of the community members.

The study of the endocrine status can be useful to understand wildlife responses to the changing environment. Here, we validated an enzyme immunoassay (EIA) to non-invasively monitor adrenocortical activity by measuring fecal corticosterone metabolites (FCM) in three sympatric gerbil species (Gerbillus andersoni, G. gerbillus and G. pyramidum) from the Northwestern Negev Desert’s sands (Israel). Animals included into treatment groups were injected with adrenocorticotropic hormone (ACTH) to stimulate adrenocortical activity, while control groups received a saline solution. Feces were collected at different intervals and FCM were quantified by an EIA. Basal FCM levels were similar in the three species. The ACTH effect was evidenced, but the time of FCM peak concentrations appearance differed between the species (6–24 h post-injection). Furthermore, FCM peak values were observed sooner in G. andersoni females than in males (6 h and 18 h post-injection, respectively). G. andersoni and G. gerbillus males in control groups also increased FCM levels (18 h and 48 h post-injection, respectively). Despite the small sample sizes, our results confirmed the EIA suitability for analyzing FCM in these species as a reliable indicator of the adrenocortical activity. This study also revealed that close species, and individuals within a species, can respond differently to the same stressor.

We investigated seasonality of gender differences in the patterns of flea infestation in nine rodent species to test if sex-biased parasitism in terms of mean abundance, species richness, prevalence and the level of aggregation (a) varies among hosts and between seasons, and (b) is linked to sexual size dimorphism. Sexual size differences were significant in both summer and winter in Acomys cahirinus, Gerbillus pyramidum and Meriones crassus, and in winter only in Acomys russatus, Gerbillus dasyurus, Gerbillus nanus and Sekeetamys calurus. Sexual size dimorphism was male biased except for A. russatus in which it was female biased. Manifestation of sexual differences in flea infestation was different among hosts between seasons. A significant effect of sex on mean flea abundance was found in six hosts, on mean flea species richness in five hosts and on prevalence in two hosts. Male-biased parasitism was found in summer in one host only and in winter in five hosts. Female-biased parasitism occurred in winter in A. russatus. Gender differences in the slopes of the regressions of log-transformed variances against log-transformed mean abundances occurred in three hosts. No relationship was found between sexual size dimorphism and any parasitological parameter in any season using both conventional regressions and the method of independent contrasts. Our results suggest that sex-biased parasitism is a complicated phenomenon that involves several different mechanisms.

Relationships between host and microbial diversity have important ecological and applied implications. Theory predicts that these relationships will depend on the spatio-temporal scale of the analysis and the niche breadth of the organisms in question, but representative data on host-microbial community assemblage in nature is lacking. We employed a natural gradient of rodent species richness and quantified bacterial communities in rodent blood at several hierarchical spatial scales to test the hypothesis that associations between host and microbial species diversity will be positive in communities dominated by organisms with broad niches sampled at large scales. Following pyrosequencing of rodent blood samples, bacterial communities were found to be comprised primarily of broad niche lineages. These communities exhibited positive correlations between host diversity, microbial diversity and the likelihood for rare pathogens at the regional scale but not at finer scales. These findings demonstrate how microbial diversity is affected by host diversity at different spatial scales and suggest that the relationships between host diversity and overall disease risk are not always negative, as the dilution hypothesis predicts.

Bacteriocins are bacteriocidal toxins released by almost all bacteria. They are thought to have a narrow range of killing, but as bacteriocin‐mediated interactions have been rarely studied at biologically relevant scales, whether this narrow range of action falls mostly within or mostly between coexisting species in natural communities is an open question with important ecological and evolutionary implications. In a previous study, we systematically sampled Xenorhabdus bacteria along a hillside and found evidence for genotypic variability and bacteriocin‐mediated interactions within Xenorhabdus bovienii and X. koppenhoeferi colonies that were collected only a few meters apart. In contrast, colonies that were isolated from the same soil sample were always genetically similar and showed no inhibitions. Here, we conducted pairwise growth‐inhibition assays within and between seven X. bovienii and five X. koppenhoeferi colonies that were isolated from different soil samples; all seven X. bovienii colonies and at least three of the X. koppenhoeferi have been distinguished as distinct genotypes based on coarse‐grain genomic markers. We found signatures for both conspecific and heterospecific bacteriocin inhibitions in this natural community of Xenorhabdus bacteria, but intraspecific inhibitions were significantly more common than interspecific inhibitions. These results suggest that bacteriocins have a major role in intraspecific competition in nature, but also suggest that bacterocins are important in mediating interspecific interactions among coexisting species in natural communities. Bacteriocins are bacteriocidal toxins released by almost all bacteria. They are known to have a narrow range of killing, but whether this narrow range of action falls mostly within or mostly between species in natural communities is an open problem with important ecological and evolutionary implications. Here we establish the existence of both intraspecific and interspecific bacteriocin‐mediated interactions at biologically relevant scales in nature, and show that inhibitions between conspecifics are significantly more common than between heterospecifics, using entomopathogenic bacteria (Xenorhabdus bovienii and X. koppenhoeferi). These results suggest that bacteriocins may serve to mediate bacterial community interactions and that a major role of bacteriocins in nature is to mediate intraspecific microbial dynamics.

When free-roaming in natural areas, the domestic cat (Felis silvestris catus) is ranked high among the most destructive alien species. Near human dwellings, it might pose a risk to humans, impair sanitation, and suffer from poor welfare. Cats' popularity as companion animals complicates their population control. Thus, culling is often replaced by a fertility control method called “trap–neuter–return/release” (TNR), considered more humane. Despite the extensive application of TNR, a long-term controlled study was never performed to test its effectiveness. We present a uniquely designed controlled field experiment for examining TNR effectiveness. The study was performed over a 12-y period, divided into preintervention and mixed- and full-intervention phases, and spanned a 20-km² urban area. Trends of cat, intact-female, and kitten counts, cat reproduction, and carcass reports were compared among study phases and areas with different neutering intensities. The cat population increased during the first two study phases and did not decline in highly neutered populations, presumably due to cat immigration. Expansion of high-intensity neutering to the entire city in the full-intervention phase (>70% neutering percentage) reversed cat population growth, reaching an annual approximately 7% reduction. This population reduction was limited by a rebound increase in cat reproduction and longevity. We conclude that cat population management by TNR should be performed with high intensity, continuously, and in geographic contiguity to enable population reduction. To enhance management effectiveness and mitigate compensatory effects, we recommend further evaluating an integrated strategy that combines TNR with complementary methods (e.g., vital resource regulation, ill cat euthanasia, and adoption).