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result(s) for
"Heller, Michael J"
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DNA multi-bit non-volatile memory and bit-shifting operations using addressable electrode arrays and electric field-induced hybridization
2018
DNA has been employed to either store digital information or to perform parallel molecular computing. Relatively unexplored is the ability to combine DNA-based memory and logical operations in a single platform. Here, we show a DNA tri-level cell non-volatile memory system capable of parallel random-access writing of memory and bit shifting operations. A microchip with an array of individually addressable electrodes was employed to enable random access of the memory cells using electric fields. Three segments on a DNA template molecule were used to encode three data bits. Rapid writing of data bits was enabled by electric field-induced hybridization of fluorescently labeled complementary probes and the data bits were read by fluorescence imaging. We demonstrated the rapid parallel writing and reading of 8 (2
3
) combinations of 3-bit memory data and bit shifting operations by electric field-induced strand displacement. Our system may find potential applications in DNA-based memory and computations.
DNA based technology holds promise for non-volatile memory and computational tasks, yet the relatively slow hybridization kinetics remain a bottleneck. Here, Song et al. have developed an electric field-induced hybridization platform that can speed up multi-bit memory and logic operations.
Journal Article
Rapid Electrokinetic Isolation of Cancer-Related Circulating Cell-Free DNA Directly from Blood
by
Manouchehri, Sareh
,
Kipps, Thomas J
,
Widhopf, George F
in
Acquisitions & mergers
,
Biomarkers
,
Biomarkers, Tumor - blood
2014
Circulating cell-free DNA (ccf-DNA) is becoming an important biomarker for cancer diagnostics and therapy monitoring. The isolation of ccf-DNA from plasma as a \"liquid biopsy\" may begin to replace more invasive tissue biopsies for the detection and analysis of cancer-related mutations. Conventional methods for the isolation of ccf-DNA from plasma are costly, time-consuming, and complex, preventing the use of ccf-DNA biomarkers for point-of-care diagnostics and limiting other biomedical research applications.
We used an AC electrokinetic device to rapidly isolate ccf-DNA from 25 μL unprocessed blood. ccf-DNA from 15 chronic lymphocytic leukemia (CLL) patients and 3 healthy individuals was separated into dielectrophoretic (DEP) high-field regions, after which other blood components were removed by a fluidic wash. Concentrated ccf-DNA was detected by fluorescence and eluted for quantification, PCR, and DNA sequencing. The complete process, blood to PCR, required <10 min. ccf-DNA was amplified by PCR with immunoglobulin heavy chain variable region (IGHV)-specific primers to identify the unique IGHV gene expressed by the leukemic B-cell clone, and then sequenced.
PCR and DNA sequencing results obtained by DEP from 25 μL CLL blood matched results obtained by use of conventional methods for ccf-DNA isolation from 1 mL plasma and for genomic DNA isolation from CLL patient leukemic B cells isolated from 15-20 mL blood.
Rapid isolation of ccf-DNA directly from a drop of blood will advance disease-related biomarker research, accelerate the transition from tissue to liquid biopsies, and enable point-of-care diagnostic systems for patient monitoring.
Journal Article
Rapid Determination of Single Base Mismatch Mutations in DNA Hybrids by Direct Electric Field Control
by
Tu, Eugene
,
Heller, Michael J.
,
Butler, William F.
in
Bacterial Proteins
,
Base pair mismatch
,
Biochemistry
1997
We have demonstrated that controlled electric fields can be used to regulate transport, concentration, hybridization, and denaturation of single- and double-stranded oligonucleotides. Discrimination among oligonucleotide hybrids with widely varying binding strengths may be attained by simple adjustment of the electric field strength. When this approach is used, electric field denaturation control allows single base pair mismatch discrimination to be carried out rapidly (<15 sec) and with high resolution. Electric field denaturation takes place at temperatures well below the melting point of the hybrids, and it may constitute a novel mechanism of DNA denaturation.
Journal Article
Influence of MWCNTs on β-Phase PVDF and Triboelectric Properties
2017
The surface of multiwalled carbon nanotubes (MWCNTs) was chemically modified using 1-pyrenebutyric acid (PBA) to improve its compatibility with polyvinylidene fluoride (PVDF). The carboxylic acid groups of the MWCNTs-PBA (PCNTs) provide a β-phase nucleation site to the fluorine of PVDF along their surface. The content of the β-phase crystalline structure of PVDF was found to be the highest at a concentration of 1.0 wt.% of PCNTs, and these PVDF-PCNTs composites were utilized as active layers in triboelectric devices. The maximum output voltage achieved was 16 volts at a concentration of 1.0 wt.% of PCNTs in the PVDF composites.
Journal Article
Removal of luminal content protects the small intestine during hemorrhagic shock but is not sufficient to prevent lung injury
by
Richter, Michael D.
,
Heller, Michael J.
,
Altshuler, Angelina E.
in
Blood pressure
,
Cell membranes
,
Digestive enzymes
2013
The small intestine plays a key role in the pathogenesis of multiple organ failure following circulatory shock. Current results show that reduced perfusion of the small intestine compromises the mucosal epithelial barrier, and the intestinal contents (including pancreatic digestive enzymes and partially digested food) can enter the intestinal wall and transport through the circulation or mesenteric lymph to other organs such as the lung. The extent to which the luminal contents of the small intestine mediate tissue damage in the intestine and lung is poorly understood in shock. Therefore, rats were assigned to three groups: No‐hemorrhagic shock (HS) control and HS with or without a flushed intestine. HS was induced by reducing the mean arterial pressure (30 mmHg; 90 min) followed by return of shed blood and observation (3 h). The small intestine and lung were analyzed for hemorrhage, neutrophil accumulation, and cellular membrane protein degradation. After HS, animals with luminal contents had increased neutrophil accumulation, bleeding, and destruction of E‐cadherin in the intestine. Serine protease activity was elevated in mesenteric lymph fluid collected from a separate group of animals subjected to intestinal ischemia/reperfusion. Serine protease activity was elevated in the plasma after HS but was detected in lungs only in animals with nonflushed lumens. Despite removal of the luminal contents, lung injury occurred in both groups as determined by elevated neutrophil accumulation, permeability, and lung protein destruction. In conclusion, luminal contents significantly increase intestinal damage during experimental HS, suggesting transport of luminal contents across the intestinal wall should be minimized. e00109 Current results show that reduced perfusion to the small intestine compromises the mucosal epithelial barrier, and the intestinal contents (including pancreatic digestive enzymes and partially digested food) can enter the intestinal wall and transport through the circulation or mesenteric lymph to other organs such as the lung. Using an acute model of hemorrhagic shock in a rat with or without luminal contents in the small intestine, we studied the impact of luminal contents on intestine and lung injury. We show that intestinal damage is abrogated if luminal contents in the intestine are removed prior to the onset of intestinal ischemia induced by hemorrhage, which may have important clinical implications in the field of trauma.
Journal Article
Electric-Field-Directed Self-Assembly of Active Enzyme-Nanoparticle Structures
by
Heller, Michael J.
,
Hsiao, Alexander P.
in
Avidin - chemistry
,
Avidin - metabolism
,
Biosensing Techniques - instrumentation
2012
A method is presented for the electric-field-directed self-assembly of higher-order structures composed of alternating layers of biotin nanoparticles and streptavidin-/avidin-conjugated enzymes carried out on a microelectrode array device. Enzymes included in the study were glucose oxidase (GOx), horseradish peroxidase (HRP), and alkaline phosphatase (AP); all of which could be used to form a light-emitting microscale glucose sensor. Directed assembly included fabricating multilayer structures with 200 nm or 40 nm GOx-avidin-biotin nanoparticles, with AP-streptavidin-biotin nanoparticles, and with HRP-streptavidin-biotin nanoparticles. Multilayered structures were also fabricated with alternate layering of HRP-streptavidin-biotin nanoparticles and GOx-avidin-biotin nanoparticles. Results showed that enzymatic activity was retained after the assembly process, indicating that substrates could still diffuse into the structures and that the electric-field-based fabrication process itself did not cause any significant loss of enzyme activity. These methods provide a solution to overcome the cumbersome passive layer-by-layer assembly methods to efficiently fabricate higher-order active biological and chemical hybrid structures that can be useful for creating novel biosensors and drug delivery nanostructures, as well as for diagnostic applications.
Journal Article
Preparation and hybridization analysis of DNA/RNA from E. coli on microfabricated bioelectronic chips
by
Heller, Michael J.
,
Carrino, John
,
O'Connell, James P.
in
Agriculture
,
Bioinformatics
,
Biological and medical sciences
1998
Escherichia coli
were separated from a mixture containing human blood cells by means of dielec-trophoresis and then subjected to electronic lysis followed by proteolytic digestion on a single microfabricated bioelectronic chip. An alternating current electric field was used to direct the bacteria to 25 microlocations above individually addressable platinum microelectrodes. The platinum electrodes were 80 μm in diameter and had center-to-center spacings of 200 μm. After the isolation, the bacteria were lysed by a series of high-voltage pulses. The lysate contained a spectrum of nucleic acids including RNA, plasmid DNA, and genomic DNA. The lysate was further examined by electronically enhanced hybridization on separate bioelectronic chips. Dielectrophoretic separation of cells followed by electronic lysis and digestion on an electronically active chip may have potential as a sample preparation process for chip-based hybridization assays in an integrated DNA/RNA analysis system.
Journal Article
Signing a New Vendor Agreement? Consider This First
2016
Credit unions are constantly entering into agreements with third-party vendors ranging in criticality from vendors that implement a new core processor to vendors that provide custodial services. Regardless of the vendor, credit unions have a regulatory obligation to protect confidential member information. Therefore, it is imperative for credit unions to address the data breach threat by ensuring there are adequate protections incorporated into their vendor agreements to avoid potential liability resulting from unauthorized access or use of their confidential information. Despite the fact that each third-party vendor agreement includes different contractual terms, credit unions should make sure that the following five provisions are addressed in some capacity. First, the agreement must state what information the parties consider to be \"confidential.\"
Trade Publication Article
Complementary Carrier Peptide Synthesis: General Strategy and Implications for Prebiotic Origin of Peptide Synthesis
by
Letsinger, Robert L.
,
Heller, Michael J.
,
Klotz, Irving M.
in
Amines
,
Amino acids
,
Biochemistry
1979
A method for peptide synthesis is proposed based on a template-directed scheme that parallels that of the native ribosomal mechanism. In this procedure, peptide bond formation is facilitated by the juxtaposition of aminoacyl and peptidyl oligonucleotide carriers bound adjacent to one another on an oligonucleotide template. The general strategy of the synthesis and relevant model studies are described. The scheme provides an intrinsic mechanism by which oligonucleotides can direct the synthesis of polypeptides in the absence of protein or ribosomal machinery and, as such, suggests a model for the origin of prebiotic protein synthesis.
Journal Article