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Irreproducibility of preclinical biomedical research has gained recent attention. It is suggested that requiring authors to complete a checklist at the time of manuscript submission would improve the quality and transparency of scientific reporting, and ultimately enhance reproducibility. Whether a checklist enhances quality and transparency in reporting preclinical animal studies, however, has not been empirically studied. Here we searched two highly cited life science journals, one that requires a checklist at submission (Nature) and one that does not (Cell), to identify in vivo animal studies. After screening 943 articles, a total of 80 articles were identified in 2013 (pre-checklist) and 2015 (post-checklist), and included for the detailed evaluation of reporting methodological and analytical information. We compared the quality of reporting preclinical animal studies between the two journals, accounting for differences between journals and changes over time in reporting. We find that reporting of randomization, blinding, and sample-size estimation significantly improved when comparing Nature to Cell from 2013 to 2015, likely due to implementation of a checklist. Specifically, improvement in reporting of the three methodological information was at least three times greater when a mandatory checklist was implemented than when it was not. Reporting the sex of animals and the number of independent experiments performed also improved from 2013 to 2015, likely from factors not related to a checklist. Our study demonstrates that completing a checklist at manuscript submission is associated with improved reporting of key methodological information in preclinical animal studies.

We recently identified a previously unidentified sphingosine-1-phosphate (S1P) signaling mechanism that stimulates production of a key innate immune element, cathelicidin antimicrobial peptide (CAMP), in mammalian cells exposed to external perturbations, such as UVB irradiation and other oxidative stressors that provoke subapoptotic levels of endoplasmic reticulum (ER) stress, independent of the well-known vitamin D receptor-dependent mechanism. ER stress increases cellular ceramide and one of its distal metabolites, S1P, which activates NF-κB followed by C/EBPα activation, leading to CAMP production, but in a S1P receptor-independent fashion. We now show that S1P activates NF-κB through formation of a previously unidentified signaling complex, consisting of S1P, TRAF2, and RIP1 that further associates with three stress-responsive proteins; i.e., heat shock proteins (GRP94 and HSP90α) and IRE1α. S1P specifically interacts with the N-terminal domain of heat shock proteins. Because this ER stress-initiated mechanism is operative in both epithelial cells and macrophages, it appears to be a universal, highly conserved response, broadly protective against diverse external perturbations that lead to increased ER stress. Finally, these studies further illuminate how ER stress and S1P orchestrate critical stress-specific signals that regulate production of one protective response by stimulating production of the key innate immune element, CAMP.

Harlequin Ichthyosis is a severe skin disease caused by mutations in the human gene encoding ABCA12. Here, we characterize a novel mutation in intron 29 of the mouse Abca12 gene that leads to the loss of a 5' splice donor site and truncation of the Abca12 RNA transcript. Homozygous mutants of this smooth skin or smsk allele die perinatally with shiny translucent skin, typical of animal models of Harlequin Ichthyosis. Characterization of smsk mutant skin showed that the delivery of glucosylceramides and CORNEODESMOSIN was defective, while ultrastructural analysis revealed abnormal lamellar bodies and the absence of lipid lamellae in smsk epidermis. Unexpectedly, mutant stratum corneum remained intact when subjected to harsh chemical dissociation procedures. Moreover, both KALLIKREIN 5 and -7 were drastically decreased, with retention of desmoplakin in mutant SC. In cultured wild type keratinocytes, both KALLIKREIN 5 and -7 colocalized with ceramide metabolites following calcium-induced differentiation. Reducing the intracellular levels of glucosylceramide with a glucosylceramide synthase inhibitor resulted in decreased secretion of KALLIKREIN proteases by wild type keratinocytes, but not by smsk mutant keratinocytes. Together, these findings suggest an essential role for ABCA12 in transferring not only lipids, which are required for the formation of multilamellar structures in the stratum corneum, but also proteolytic enzymes that are required for normal desquamation. Smsk mutant mice recapitulate many of the pathological features of HI and can be used to explore novel topical therapies against a potentially lethal and debilitating neonatal disease.

Alcohol use disorder is marked by disrupted behavioral and emotional states which persist into abstinence. The enduring synaptic alterations that remain despite the absence of alcohol are of interest for interventions to prevent relapse. Here, 28 male rhesus macaques underwent over 20 months of alcohol drinking interspersed with three 30-day forced abstinence periods. After the last abstinence period, we paired direct sub-second dopamine monitoring via ex vivo voltammetry in nucleus accumbens core with RNA-sequencing of the ventral tegmental area. We found persistent augmentation of dopamine transporter function, kappa opioid receptor sensitivity, and putative dynorphin release – all inhibitory regulators which act to decrease extracellular dopamine. Surprisingly, though transcript expression was not altered, the relationship between gene expression and functional readouts of these encoded proteins was highly dynamic and altered by drinking history. These results outline the long-lasting synaptic impact of alcohol use and suggest that assessment of transcript-function relationships is critical for the rational design of precision therapeutics. How alcohol-induced plasticity evolves over protracted abstinence is not well understood. Here, authors show the long-lasting impact of drinking on dopamine transmission and that altered function is not explained by upstream gene transcription.

Imaging mass spectrometry (IMS) is a useful cutting edge technology used to investigate the distribution of biomolecules such as drugs and metabolites, as well as to identify molecular species in tissues and cells without labeling. To protect against excess water loss that is essential for survival in a terrestrial environment, mammalian skin possesses a competent permeability barrier in the stratum corneum (SC), the outermost layer of the epidermis. The key lipids constituting this barrier in the SC are the ceramides (Cers) comprising of a heterogeneous molecular species. Alterations in Cer composition have been reported in several skin diseases that display abnormalities in the epidermal permeability barrier function. Not only the amounts of different Cers, but also their localizations are critical for the barrier function. We have employed our new imaging system, capable of high-lateral-resolution IMS with an atmospheric-pressure ionization source, to directly visualize the distribution of Cers. Moreover, we show an ichthyotic disease pathogenesis due to abnormal Cer metabolism in Dorfman-Chanarin syndrome, a neutral lipid storage disorder with ichthyosis in human skin, demonstrating that IMS is a novel diagnostic approach for assessing lipid abnormalities in clinical setting, as well as for investigating physiological roles of lipids in cells/tissues.

Neutralization of stratum corneum (SC) adversely impacts key epidermal functions, including permeability barrier homeostasis and SC integrity. Conversely, acidification of SC improves these functions in developmentally impaired (neonatal or aged) skin, and enhances function in normal skin. Hence, we hypothesized that acidification could alter the course of inflammatory dermatoses, which invariably exhibit an increased SC pH. Maintenance of a low pH by topical applications of the polyhydroxyl acid, lactobionic acid, during the repeated-challenge phase inhibited the development of oxazolone-induced atopic dermatitis (AD). Neither gross/histological dermatitis nor altered barrier function developed, and emergence of epidermal hyperplasia was prevented; however, cytokine generation decreased. Acidification also largely normalized the development of hapten-induced changes in eosinophil/mast cell densities, density of chemoattractant receptor-homologous molecule expressed on TH2-positive lymphocytes, and serum IgE levels. The pH-induced improvement in barrier function most likely accounts for the anti-inflammatory activity, which could be further attributed to normalization of both lamellar body secretion and lamellar bilayer formation. Acidification of SC alone substantially prevents development of barrier abnormalities and downstream immune abnormalities during the elicitation phase of murine AD. These results provide direct evidence for the “outside–inside” pathogenesis of AD and further suggest that maintenance of an acidic SC pH could prevent the emergence of AD in humans.

Quantifying catchment scale soil property variation yields insights into critical zone evolution and function. The objective of this study was to quantify and predict the spatial distribution of soil properties within a high elevation forested catchment in southern AZ, USA using a combined set of digital soil mapping (DSM) and sampling design techniques to quantify catchment scale soil spatial variability. The study focused on a 6 ha catchment on granitic parent materials under mixed-conifer forest, with a mean elevation of 2400ma.s.l., mean annual temperature of 10 °C and mean annual precipitation of ~85 cm yr(−1). The sample design was developed using a unique combination of iterative principal component analysis (iPCA) of environmental covariates derived from remotely sensed imagery and topography, and a conditioned Latin Hypercube Sampling (cLHS) scheme. Samples were collected by genetic horizon from 24 soil profiles excavated to the depth of refusal and characterized for soil mineral assemblage, geochemical composition, and general soil physical and chemical properties. Soil properties were extrapolated across the entire catchment using a combination of least squares linear regression between soil properties and selected environmental covariates, and spatial interpolation or regression residual using inverse distance weighting (IDW). Model results indicated that convergent portions of the landscape contained deeper soils, higher clay and carbon content, and greater Na mass loss relative to adjacent slopes and divergent ridgelines. The results of this study indicated that: (i) the coupled application of iPCA and cLHS produced a sampling scheme that captured the majority of catchment scale soil variability; (ii) application of relatively simple regression models and IDW interpolation of residuals described well the variance in measured soil properties and predicted spatial correlation of soil properties to landscape structure; and (iii) at this scale of observation, 6 ha catchment, topographic covariates explained more variation in soil properties than vegetation covariates. The DSM techniques applied here provide a framework for interpreting catchment scale variation in critical zone process and evolution. Future work will focus on coupling results from this coupled empirical-statistical approach to output from mechanistic, process-based numerical models of critical process and evolution.

Alzheimer's disease (AD) is a progressive neurodegenerative disorder that is characterized by molecular pathologies, the accumulation of amyloid-β and neurofibrillary tau, and deficits in memory and cognition. Neuropsychiatric symptoms (NPS), such as depression and apathy, are increasingly viewed as early manifestations of AD and have been linked to disease development and progression. Dopamine, a critical regulator of motivation, learning, and memory, has been implicated in AD pathophysiology, but its specific role in disease progression remains underexplored. This study investigates the relationship between cognitive deficits and mesolimbic dopamine function in Tau P301S mice, a model of tauopathy. Cognitive and behavioral assessments were conducted in male and female Tau P301S mice at 3, 6, and 9 months of age using novel object recognition (NOR), social interaction, and sucrose preference tests. Mesolimbic dopamine function was evaluated through ex vivo fast-scan cyclic voltammetry in the nucleus accumbens core. Cognitive deficits were evident as early as 3 months in Tau P301S mice. By 6 months, these mice exhibited impaired NOR performance and reduced sucrose preference. Although dopamine release and reuptake remained unchanged at this stage, there was reduced D2 receptor sensitivity that correlated with cognitive deficits. At 9 months, Tau P301S mice demonstrated worsened behavioral and cognitive impairments, accompanied by trending reductions in dopamine release and reuptake, as well as further declines in D2 receptor sensitivity. Notably, increased NOR performance positively correlated with dopamine release. A small cohort of APP/PS1 mice displayed similar deficits in behavior and dopamine function. Tau P301S mice exhibit progressive cognitive and social impairments that correlate with alterations in mesolimbic dopamine function. Similar dysfunctions were observed in APP/PS1 mice, underscoring the relevance of dopamine dysregulation across multiple AD models. These findings highlight the role of mesolimbic dopamine system dysfunction in AD and suggest targeting dopamine-related pathways to alleviate cognitive and behavioral deficits.

Although ceramides (Cers) are key constituents of the epidermal permeability barrier, they also function as apoptogenic signals for UVB irradiation-induced apoptosis in epidermal keratinocytes. As epidermis is continuously exposed to UV irradiation, we hypothesized that Cer hydrolysis protects keratinocytes from UVB-induced apoptosis by attenuating Cer levels. Both low-dose UVB (L-UVB) (<35mJcm−2) and high-dose UVB (H-UVB) (≥45mJcm−2) irradiation inhibited DNA synthesis in cultured human keratinocytes, but apoptosis occurred only after H-UVB. Whereas Cer production increased after both L- and H-UVB, it normalized only in L-UVB-exposed keratinocytes, but remained elevated after H-UVB. Both acidic ceramidase (aCDase) and neutral ceramidase (nCDase) activities declined after L- and H-UVB, but returned to normal only in L-UVB cells, with decreased CDase activities or mRNA or protein levels being sustained in H-UVB cells. Inhibition of CDase using either a CDase inhibitor, N-oleoylethanolamine, or small interfering RNA (siRNA) (either to a- and/or n-CDase(s)) sensitized keratinocytes to L-UVB-induced apoptosis in parallel with further Cer accumulation. Blockade of sphingosine kinase 1 (SPHK1) (but not SPHK2) by siRNA also increased apoptosis in L-UVB keratinocytes, revealing that conversion of sphingosine to sphingosine-1-phosphate (S1P) further protects keratinocytes from UVB-induced cell death. Thus, Cer → sphingosine → S1Pmetabolic conversion protects against UVB-induced, Cer-mediated apoptosis in keratinocytes, but excessive UVB overwhelms this mechanism, thereby leading to keratinocyte apoptosis.