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"Hopper, Bruce"
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A cryptic microdeletion del(12)(p11.21p11.23) within an unbalanced translocation t(7;12)(q21.13;q23.1) implicates new candidate loci for intellectual disability and Kallmann syndrome
2023
In a patient diagnosed with both Kallmann syndrome (KS) and intellectual disability (ID), who carried an apparently balanced translocation t(7;12)(q22;q24)
dn
, array comparative genomic hybridization (aCGH) disclosed a cryptic heterozygous 4.7 Mb deletion del(12)(p11.21p11.23), unrelated to the translocation breakpoint. This novel discovery prompted us to consider the possibility that the combination of KS and neurological disorder in this patient could be attributed to gene(s) within this specific deletion at 12p11.21-12p11.23, rather than disrupted or dysregulated genes at the translocation breakpoints. To further support this hypothesis, we expanded our study by screening five candidate genes at both breakpoints of the chromosomal translocation in a cohort of 48 KS patients. However, no mutations were found, thus reinforcing our supposition. In order to delve deeper into the characterization of the 12p11.21-12p11.23 region, we enlisted six additional patients with small copy number variations (CNVs) and analyzed eight individuals carrying small CNVs in this region from the DECIPHER database. Our investigation utilized a combination of complementary approaches. Firstly, we conducted a comprehensive phenotypic-genotypic comparison of reported CNV cases. Additionally, we reviewed knockout animal models that exhibit phenotypic similarities to human conditions. Moreover, we analyzed reported variants in candidate genes and explored their association with corresponding phenotypes. Lastly, we examined the interacting genes associated with these phenotypes to gain further insights. As a result, we identified a dozen candidate genes:
TSPAN11
as a potential KS candidate gene,
TM7SF3, STK38L, ARNTL2, ERGIC2, TMTC1, DENND5B
, and
ETFBKMT
as candidate genes for the neurodevelopmental disorder, and
INTS13, REP15, PPFIBP1
, and
FAR2
as candidate genes for KS with ID. Notably, the high-level expression pattern of these genes in relevant human tissues further supported their candidacy. Based on our findings, we propose that dosage alterations of these candidate genes may contribute to sexual and/or cognitive impairments observed in patients with KS and/or ID. However, the confirmation of their causal roles necessitates further identification of point mutations in these candidate genes through next-generation sequencing.
Journal Article
Evaluation of Satisfaction of Parents With the Use of Videoconferencing for a Pediatric Genetic Consultation
by
Edwards, Matthew
,
Hopper, Bruce
,
Buckman, Melissa
in
Attitude of Health Personnel
,
Australia
,
Genetic aspects
2011
Telegenetics is a new development in the service delivery of Genetic Services in Australia. This project was designed to establish if it was an acceptable alternative to a face-to-face consultation in the genetic assessment of intellectual disability, including morphological assessment, of the patient. Ten children from two outreach clinics in rural NSW who were referred by their pediatrician were assessed by a single geneticist via telehealth and then seen again face-to-face as a ‘gold standard'. Satisfaction surveys were then sent to both the parents and the referring pediatricians. After the face-to-face appointment, the clinical geneticist reviewed the recordings of both the transmitted footage and the high definition footage that was sent separately. There were very few morphological findings missed by the telegenetic assessments. The discrepancies that were noted could decrease in frequency as staff become more familiar with the methods. The parents of the patients reported no problem with the cameras and telehealth. They would have preferred face-to-face appointment but would be happy to have the telehealth appointment if it meant being seen earlier. This pilot study suggests that clinical genetic diagnostic assessment could be performed by telemedicine.
Journal Article
KAT6A Syndrome: genotype–phenotype correlation in 76 patients with pathogenic KAT6A variants
by
Kennedy, Joanna
,
Chandler, Kate
,
McCormick, Elizabeth
in
Adolescent
,
Adult
,
Biomedical and Life Sciences
2019
Purpose
Pathogenic variants in
KAT6A
have recently been identified as a cause of syndromic developmental delay. Within 2 years, the number of patients identified with pathogenic
KAT6A
variants has rapidly expanded and the full extent and variability of the clinical phenotype has not been reported.
Methods
We obtained data for patients with
KAT6A
pathogenic variants through three sources: treating clinicians, an online family survey distributed through social media, and a literature review.
Results
We identified 52 unreported cases, bringing the total number of published cases to 76. Our results expand the genotypic spectrum of pathogenic variants to include missense and splicing mutations. We functionally validated a pathogenic splice-site variant and identified a likely hotspot location for
de novo
missense variants. The majority of clinical features in KAT6A syndrome have highly variable penetrance. For core features such as intellectual disability, speech delay, microcephaly, cardiac anomalies, and gastrointestinal complications, genotype– phenotype correlations show that late-truncating pathogenic variants (exons 16–17) are significantly more prevalent. We highlight novel associations, including an increased risk of gastrointestinal obstruction.
Conclusion
Our data expand the genotypic and phenotypic spectrum for individuals with genetic pathogenic variants in
KAT6A
and we outline appropriate clinical management.
Journal Article
Arthritides
2011
The definition of arthritis is joint inflammation. The knee joint contains several specific tissues: articular cartilage, meniscus cartilage, synovium, synovial fluid, capsule, ligaments, periarticular muscles, and subchondral bone.
1
Arthritis has 2 general categories: inflammatory and noninflammatory. The most common form of noninflammatory arthritis is osteoarthritis, or degenerative joint disease, which is the mechanical \"wear and tear\" of joints associated with aging. The knee joint is one of the most commonly affected joints in humans from both inflammatory and noninflammatory perspectives. The inflammatory arthritides about the knee include several etiologies: rheumatoid, lupus-mediated, crystalline, infectious, viral, septic, and psoriatic. Furthermore, inflammatory arthritis is associated with more than 100 other rheumatic diseases. There are currently 46 million Americans living with some type of arthritis. It is the most common cause of adult disability in the United States, affecting 19 million Americans.
2
Book Chapter
Correction: KAT6A Syndrome: genotype–phenotype correlation in 76 patients with pathogenic KAT6A variants
by
Kennedy, Joanna
,
Chandler, Kate
,
McCormick, Elizabeth
in
Biomedical and Life Sciences
,
Biomedicine
,
Correction
2020
An amendment to this paper has been published and can be accessed via a link at the top of the paper.An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Journal Article
KAT6A Syndrome: genotype–phenotype correlation in 76 patientswith pathogenic KAT6A variants
2019
Purpose Pathogenic variants in KAT6A have recently been identified as a cause of syndromic developmental delay. Within 2 years, the number of patients identified with pathogenic KAT6A variants has rapidly expanded and the full extent and variability of the clinical phenotype has not been reported.MethodsWe obtained data for patients with KAT6A pathogenic variants through three sources: treating clinicians, an online family survey distributed through social media, and a literature review.ResultsWe identified 52 unreported cases, bringing the total number of published cases to 76. Our results expand the genotypic spectrum of pathogenic variants to include missense and splicing mutations. We functionally validated a pathogenic splice-site variant and identified a likely hotspot location forde novo missense variants. The majority of clinical features in KAT6A syndrome have highly variable penetrance. For core features such as intellectual disability, speech delay, microcephaly, cardiac anomalies, and gastrointestinal complications, genotype– phenotype correlations show that late-truncating pathogenic variants (exons 16–17) are significantly more prevalent. We highlight novel associations, including an increased risk of gastrointestinal obstruction.ConclusionOur data expand the genotypic and phenotypic spectrum for individuals with genetic pathogenic variants in KAT6A and we outline appropriate clinical management.
Journal Article