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"Horak, Martin"
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Sites of governance : multilevel governance and policy making in Canada's big cities
\"Policies forged by all levels of government affect the lives of urban residents. Contributors to this volume explore how intergovernmental relations shape urban policies and how various social forces are involved in--or excluded from--the policy process. Focusing on diverse policy fields including emergency planning, image-building, immigrant settlement, infrastructure, federal property, and urban Aboriginal policy, Sites of Governance presents detailed studies of the largest city in each of Canada's provinces. Drawing on extensive documentary research and hundreds of interviews, contributors offer rich, nuanced analyses and a wealth of policy cases, ranging from preparation for the Vancouver 2010 Olympics to the development of innovative immigrant settlement programming in Winnipeg. Dominant themes include the importance of resources and formal jurisdiction in multilevel policy making, and the struggle for influence between business interests and other social forces. Essential reading for anyone concerned with the quality of urban life in Canada, Sites of Governance offers important insights about how multilevel governance works in Canadian cities.\"--Publisher's website.
Exercise-induced circulating microRNA changes in athletes in various training scenarios
2018
The aim of the study was to compare selected extracellular miRNA levels (miR-16, miR-21, miR-93 and miR-222 with the response to 8-week-long explosive strength training (EXPL), hypertrophic strength training (HYP) and high-intensity interval training (HIIT).
30 young male athletes of white European origin (mean age: 22.5 ± 4.06 years) recruited at the Faculty of Sports Studies of Masaryk University were enrolled in this study. The study participants were randomly assigned to three possible training scenarios: EXPL, HYP or HITT and participated in 8-week-long program in given arm. Blood plasma samples were collected at the baseline and at week 5 and 8 and anthropometric and physical activity parameters were measured. Pre- and post-intervention characteristics were compared and participants were further evaluated as responders (RES) or non-responders (NRES). RES/NRES status was established for the following characteristics: 300°/s right leg extension (t300), 60°/s right leg extension (t60), isometric extension (IE), vertical jump, isometric extension of the right leg and body fat percentage (BFP).
No differences in miRNA levels were apparent between the intervention groups at baseline. No statistically significant prediction role was observed using crude univariate stepwise regression model analysis where RES/NRES status for t300, t60, IE, vertical jump and pFM was used as a dependent variable and miR-21, miR-222, miR-16 and miR-93 levels at baseline were used as independent variables. The baseline levels of miR-93 expressed an independent prediction role for responder status based on isometric extension of the right leg (beta estimate 0.76, 95% CI: -0.01; 1.53, p = 0.052).
The results of the study indicate that 8-week-long explosive strength training, hypertrophic strength training and high-intensity interval training regimens are associated with significant changes in miR-16, mir-21, miR-222 and miR-93 levels compared to a baseline in athletic young men.
Journal Article
Structural features in the glycine-binding sites of the GluN1 and GluN3A subunits regulate the surface delivery of NMDA receptors
2019
N
-methyl-D-aspartate receptors (NMDARs) are ionotropic glutamate receptors that play an essential role in mediating excitatory neurotransmission in the mammalian central nervous system (CNS). Functional NMDARs are tetramers composed of GluN1, GluN2A-D, and/or GluN3A-B subunits, giving rise to a wide variety of NMDAR subtypes with unique functional properties. Here, we examined the surface delivery and functional properties of NMDARs containing mutations in the glycine-binding sites in GluN1 and GluN3A subunits expressed in mammalian cell lines and primary rat hippocampal neurons. We found that the structural features of the glycine-binding sites in both GluN1 and GluN3A subunits are correlated with receptor forward trafficking to the cell surface. In addition, we found that a potentially clinically relevant mutation in the glycine-binding site of the human GluN3A subunit significantly reduces surface delivery of NMDARs. Taken together, these findings provide novel insight into how NMDARs are regulated by their glycine-binding sites and may provide important information regarding the role of NMDARs in both physiological and pathophysiological processes in the mammalian CNS.
Journal Article
Integral micromorphic model for band gap in 1D continuum
by
Šmejkal, Michal
,
Jirásek, Milan
,
Horák, Martin
in
Acoustic propagation
,
Acoustics
,
Civil engineering
2024
The design of band gap metamaterials, i.e., metamaterials with the capability to inhibit wave propagation of a specific frequency range, has numerous potential engineering applications, such as acoustic filters and vibration isolation control. In order to describe the behavior of such materials, a novel integral micromorphic elastic continuum is introduced, and its ability to describe band gaps is studied in the one-dimensional setting. The nonlocal formulation is based on a modification of two terms in the expression for potential energy density. The corresponding dispersion equation is derived and converted to a dimensionless format, so that the effect of individual parameters can be described in the most efficient way. The results indicate that both suggested nonlocal modifications play an important role. The original local micromorphic model reproduces a band gap only in the special, somewhat artificial case, when the stiffness coefficient associated with the gradient of the micromorphic variable vanishes. On the other hand, the nonlocal formulation can provide band gaps even for nonzero values of this coefficient, provided that the penalty coefficient that enforces coupling between the micromorphic variable and nonlocal strain is sufficiently high and the micromorphic stiffness is sufficiently low.
Journal Article
mTOR pathway inhibition alters proliferation as well as differentiation of neural stem cells
by
Arzhanov, Ivan
,
Horak, Martin
,
Romanyuk, Nataliya
in
Antibiotics
,
Autism
,
Cell differentiation
2024
Neural stem cells (NSCs) are essential for both embryonic development and adult neurogenesis, and their dysregulation causes a number of neurodevelopmental disorders, such as epilepsy and autism spectrum disorders. NSC proliferation and differentiation in the developing brain is a complex process controlled by various intrinsic and extrinsic stimuli. The mammalian target of rapamycin (mTOR) regulates proliferation and differentiation, among other cellular functions, and disruption in the mTOR pathway can lead to severe nervous system development deficits. In this study, we investigated the effect of inhibition of the mTOR pathway by rapamycin (Rapa) on NSC proliferation and differentiation.
The NSC cultures were treated with Rapa for 1, 2, 6, 24, and 48 h. The effect on cellular functions was assessed by immunofluorescence staining, western blotting, and proliferation/metabolic assays.
mTOR inhibition suppressed NSC proliferation/metabolic activity as well as S-Phase entry by as early as 1 h of Rapa treatment and this effect persisted up to 48 h of Rapa treatment. In a separate experiment, NSCs were differentiated for 2 weeks after treatment with Rapa for 24 or 48 h. Regarding the effect on neuronal and glial differentiation (2 weeks post-treatment), this was suppressed in NSCs deficient in mTOR signaling, as evidenced by downregulated expression of NeuN, MAP2, and GFAP. We assume that the prolonged effect of mTOR inhibition is realized due to the effect on cytoskeletal proteins.
Here, we demonstrate for the first time that the mTOR pathway not only regulates NSC proliferation but also plays an important role in NSC differentiation into both neuronal and glial lineages.
Journal Article
Simulation of Electric Vehicle Charging Points Based on Efficient Use of Chargers and Using Recuperated Braking Energy from Trains
by
Dvořáček, Lukáš
,
Knápek, Jaroslav
,
Horák, Martin
in
Alternative energy sources
,
car park
,
Electric vehicles
2022
Electric vehicles represent an innovation in mobility that can help significantly reduce greenhouse emissions and mitigate climate change. However, replacing internal combustion with electric vehicles is not enough. This replacement needs to be complemented with a change in the energy mix of individual countries towards renewable energy sources and efficient use of electricity generated as a secondary product. Recuperative braking energy from trains can serve as one source of such secondary energy. Following an analysis of recuperative energy generated and analysis of charging requirements of individual electric vehicles, the paper proposes a model of a charging site near train stations. Using this energy to charge electric vehicles helps to reduce energy consumption from the electricity grid and thus reduce carbon emissions. Compared to other articles, the proposed model ensures the efficient use of recuperative braking energy from trains by using the variable charging power function; thereby, the installation of additional battery storage is eliminated. Our model results show that the benefits of a car park with a reservation system near train stations increase the car park efficiency, provide a sufficient number of private charging points, contribute to efficient use of recovered energy, and reduce carbon emissions.
Journal Article
The Extracellular Domains of GluN Subunits Play an Essential Role in Processing NMDA Receptors in the ER
by
Barackova, Petra
,
Langore, Emily
,
Rehakova, Kristyna
in
Binding sites
,
Cell surface
,
Central nervous system
2021
N -methyl- D -aspartate receptors (NMDARs) belong to a family of ionotropic glutamate receptors that play essential roles in excitatory neurotransmission and synaptic plasticity in the mammalian central nervous system (CNS). Functional NMDARs consist of heterotetramers comprised of GluN1, GluN2A-D, and/or GluN3A-B subunits, each of which contains four membrane domains (M1 through M4), an intracellular C-terminal domain, a large extracellular N-terminal domain composed of the amino-terminal domain and the S1 segment of the ligand-binding domain (LBD), and an extracellular loop between M3 and M4, which contains the S2 segment of the LBD. Both the number and type of NMDARs expressed at the cell surface are regulated at several levels, including their translation and posttranslational maturation in the endoplasmic reticulum (ER), intracellular trafficking via the Golgi apparatus, lateral diffusion in the plasma membrane, and internalization and degradation. This review focuses on the roles played by the extracellular regions of GluN subunits in ER processing. Specifically, we discuss the presence of ER retention signals, the integrity of the LBD, and critical N -glycosylated sites and disulfide bridges within the NMDAR subunits, each of these steps must pass quality control in the ER in order to ensure that only correctly assembled NMDARs are released from the ER for subsequent processing and trafficking to the surface. Finally, we discuss the effect of pathogenic missense mutations within the extracellular domains of GluN subunits with respect to ER processing of NMDARs.
Journal Article
The LILI Motif of M3-S2 Linkers Is a Component of the NMDA Receptor Channel Gate
by
Ladislav, Marek
,
Cerny, Jiri
,
Krusek, Jan
in
Amino acids
,
Binding sites
,
Calcium permeability
2018
N-methyl-D-aspartate receptors (NMDARs) mediate excitatory synaptic transmission in the central nervous system, underlie the induction of synaptic plasticity, and their malfunction is associated with human diseases. Native NMDARs are tetramers composed of two obligatory GluN1 subunits and various combinations of GluN2A-D or, more rarely, GluN3A-B subunits. Each subunit consists of an amino-terminal, ligand-binding, transmembrane and carboxyl-terminal domain. The ligand-binding and transmembrane domains are interconnected via polypeptide chains (linkers). Upon glutamate and glycine binding, these receptors undergo a series of conformational changes leading to the opening of the Ca
-permeable ion channel. Here we report that different deletions and mutations of amino acids in the M3-S2 linkers of the GluN1 and GluN2B subunits lead to constitutively open channels. Irrespective of whether alterations were introduced in the GluN1 or the GluN2B subunit, application of glutamate or glycine promoted receptor channel activity; however, responses induced by the GluN1 agonist glycine were larger, on average, than those induced by glutamate. We observed the most prominent effect when residues GluN1(L657) and GluN2B(I655) were deleted or altered to glycine. In parallel, molecular modeling revealed that two interacting pairs of residues, the LILI motif (GluN1(L657) and GluN2B(I655)), form a functional unit with the TTTT ring (GluN1(T648) and GluN2B(T647)), described earlier to control NMDAR channel gating. These results provide new insight into the structural organization and functional interplay of the LILI and the TTTT ring during the course of NMDAR channel opening and closing.
Journal Article
Surface Expression, Function, and Pharmacology of Disease-Associated Mutations in the Membrane Domain of the Human GluN2B Subunit
by
Krausova, Barbora
,
Kysilov, Bohdan
,
Kudova, Eva
in
Allosteric properties
,
Alzheimer's disease
,
Autism
2018
N-methyl-D-aspartate receptors (NMDARs), glutamate-gated ion channels, mediate signaling at the majority of excitatory synapses in the nervous system. Recent sequencing data for neurological and psychiatric patients have indicated numerous mutations in genes encoding for NMDAR subunits. Here, we present surface expression, functional, and pharmacological analysis of 11
missense mutations of the human hGluN2B subunit (P553L; V558I; W607C; N615I; V618G; S628F; E657G; G820E; G820A; M824R; L825V) located in the pre-M1, M1, M2, M3, and M4 membrane regions. These variants were identified in patients with intellectual disability, developmental delay, epileptic symptomatology, and autism spectrum disorder. Immunofluorescence microscopy indicated that the ratio of surface-to-total NMDAR expression was reduced for hGluN1/hGluN2B(S628F) receptors and increased for for hGluN1/hGluN2B(G820E) receptors. Electrophysiological recordings revealed that agonist potency was altered in hGluN1/hGluN2B(W607C; N615I; and E657G) receptors and desensitization was increased in hGluN1/hGluN2B(V558I) receptors. The probability of channel opening of hGluN1/hGluN2B (V558I; W607C; V618G; and L825V) receptors was diminished ~10-fold when compared to non-mutated receptors. Finally, the sensitivity of mutant receptors to positive allosteric modulators of the steroid origin showed that glutamate responses induced in hGluN1/hGluN2B(V558I; W607C; V618G; and G820A) receptors were potentiated by 59-96% and 406-685% when recorded in the presence of 20-oxo-pregn-5-en-3β-yl sulfate (PE-S) and androst-5-en-3β-yl hemisuccinate (AND-hSuc), respectively. Surprisingly hGluN1/hGluN2B(L825V) receptors were strongly potentiated, by 197 and 1647%, respectively, by PE-S and AND-hSuc. Synaptic-like responses induced by brief glutamate application were also potentiated and the deactivation decelerated. Further, we have used homology modeling based on the available crystal structures of GluN1/GluN2B NMDA receptor followed by molecular dynamics simulations to try to relate the functional consequences of mutations to structural changes. Overall, these data suggest that
missense mutations of the hGluN2B subunit located in membrane domains lead to multiple defects that manifest by the NMDAR loss of function that can be rectified by steroids. Our results provide an opportunity for the development of new therapeutic neurosteroid-based ligands to treat diseases associated with hypofunction of the glutamatergic system.
Journal Article
Governing the Post-Communist City
2007
Original, engaging, and authoritative, this study has much to say about the political climate in Prague after the downfall of communism, and makes insightful conclusions about the factors that contributed to present political circumstances in the region.