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741 result(s) for "Hu, Gen"
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A Review of Auxin Response Factors (ARFs) in Plants
Auxin is a key regulator of virtually every aspect of plant growth and development from embryogenesis to senescence. Previous studies have indicated that auxin regulates these processes by controlling gene expression via a family of functionally distinct DNA-binding auxin response factors (ARFs). ARFs are likely components that confer specificity to auxin response through selection of target genes as transcription factors. They bind to auxin response DNA elements (AuxRE) in the promoters of auxin-regulated genes and either activate or repress transcription of these genes depending on a specific domain in the middle of the protein. Genetic studies have implicated various ARFs in distinct developmental processes through loss-of-function mutant analysis. Recent advances have provided information on the regulation of ARF gene expression, the role of ARFs in growth and developmental processes, protein-protein interactions of ARFs and target genes regulated by ARFs in plants. In particular, protein interaction and structural studies of ARF proteins have yielded novel insights into the molecular basis of auxin-regulated transcription. These results provide the foundation for predicting the contributions of ARF genes to the biology of other plants.
Transcriptomic and physiological analysis reveals interplay between salicylic acid and drought stress in citrus tree floral initiation
Floral initiation is a critical developmental mechanism associated with external factors, and citrus flowering is mainly regulated by drought stress. However, little is known about the intricate regulatory network involved in stress-induced flowering in citrus. To understand the molecular mechanism of floral initiation in citrus, flower induction was performed on potted Citrus sinensis trees under the combined treatment of salicylic acid (SA) and drought (DR). Physiological analysis revealed that SA treatment significantly normalized the drastic effect of drought stress by increasing antioxidant enzyme activities (SOD, POD, and CAT), relative leaf water content, total chlorophyll, and proline contents and promoting more flowering than drought treatment. Analysis of transcriptome changes in leaves from different treatments showed that 1135, 2728 and 957 differentially expressed genes (DEGs) were revealed in response to DR, SD (SA + DR), and SA (SA + well water) treatments in comparison with the well watered plants, respectively. A total of 2415, 2318 and 1933 DEGs were expressed in DR, SD, and SA in comparison with water recovery, respectively. Some key flowering genes were more highly expressed in SA-treated drought plants than in DR-treated plants. GO enrichment revealed that SA treatment enhances the regulation and growth of meristem activity under drought conditions, but no such a pathway was found to be highly enriched in the control. Furthermore, we focused on various hormones, sugars, starch metabolism, and biosynthesis-related genes. The KEGG analysis demonstrated that DEGs enriched in starch sucrose metabolism and hormonal signal transduction pathways probably account for stress-induced floral initiation in citrus. In addition, a citrus LIPOYLTRANSFERSAE 2A homologous (LIP2A) gene was upregulated by SD treatment. Ectopic expression of CsLIP2A exhibited early flowering in transgenic Arabidopsis. Taken together, this study provides new insight that contributes to citrus tree floral initiation under the SA-drought scenario as well as an excellent reference for stress-induced floral initiation in woody trees.
The Role of Drought and Temperature Stress in the Regulation of Flowering Time in Annuals and Perennials
Plants experience a variety of adverse environments during their vegetative growth and reproductive development, and to ensure that they complete their life cycle successfully, they have evolved specific defense mechanisms to cope with unfavorable environments. Flowering is a vital developmental stage and an important determinant of productivity in the lifetime of plants, which can be vulnerable to multiple abiotic stresses. Exposure to stress during this period can have dramatic effects on flower physiological and morphological development, which may ultimately lead to a substantial loss of yield in seed-producing plants. However, there has been increasing research evidence that diverse abiotic stresses, ranging from drought, low temperature, and heat stress can promote or delay plant flowering. This review focuses on how plants alter developmental direction to balance between survival and productivity under drought and extreme temperature conditions. Starting from the perspective of the functional analysis of key flowering-regulated genes, it is of great help for researchers to quickly gain a deeper understanding of the regulatory effects of abiotic stress on the flowering process, to elucidate the molecular mechanisms, and to improve the regulatory network of abiotic-stress-induced flowering. Additionally, the important agronomic significance of the interaction between abiotic stress and the flowering regulation of perennial plants under climate change conditions is also discussed after summarizing studies on the mechanisms of stress-induced flowering in annual plants. This review aims to clarify the effects of abiotic stresses (mainly drought and temperature) on plant flowering, which are significant for future productivity increase under unfavorable environmental conditions.
Enhancing the Interaction of Carbon Nanotubes by Metal–Organic Decomposition with Improved Mechanical Strength and Ultra-Broadband EMI Shielding Performance
HighlightsA strategy based on metal-organic decomposition is proposed to enhance the tube-tube interactions of carbon nanotubes (CNTs).The robust tube-tube interactions of CNTs enhance both EMI shielding performance and mechanical properties of CNT film.This innovative approach provides an effective way to obtain high-performance CNT film.The remarkable properties of carbon nanotubes (CNTs) have led to promising applications in the field of electromagnetic interference (EMI) shielding. However, for macroscopic CNT assemblies, such as CNT film, achieving high electrical and mechanical properties remains challenging, which heavily depends on the tube–tube interactions of CNTs. Herein, we develop a novel strategy based on metal–organic decomposition (MOD) to fabricate a flexible silver–carbon nanotube (Ag–CNT) film. The Ag particles are introduced in situ into the CNT film through annealing of MOD, leading to enhanced tube–tube interactions. As a result, the electrical conductivity of Ag–CNT film is up to 6.82 × 105 S m−1, and the EMI shielding effectiveness of Ag–CNT film with a thickness of ~ 7.8 μm exceeds 66 dB in the ultra-broad frequency range (3–40 GHz). The tensile strength and Young’s modulus of Ag–CNT film increase from 30.09 ± 3.14 to 76.06 ± 6.20 MPa (~ 253%) and from 1.12 ± 0.33 to 8.90 ± 0.97 GPa (~ 795%), respectively. Moreover, the Ag–CNT film exhibits excellent near-field shielding performance, which can effectively block wireless transmission. This innovative approach provides an effective route to further apply macroscopic CNT assemblies to future portable and wearable electronic devices.
Evaluating the Performance of Hyperspectral Leaf Reflectance to Detect Water Stress and Estimation of Photosynthetic Capacities
Advanced techniques capable of early, rapid, and nondestructive detection of the impacts of drought on fruit tree and the measurement of the underlying photosynthetic traits on a large scale are necessary to meet the challenges of precision farming and full prediction of yield increases. We tested the application of hyperspectral reflectance as a high-throughput phenotyping approach for early identification of water stress and rapid assessment of leaf photosynthetic traits in citrus trees by conducting a greenhouse experiment. To this end, photosynthetic CO2 assimilation rate (Pn), stomatal conductance (Cond) and transpiration rate (Trmmol) were measured with gas-exchange approaches alongside measurements of leaf hyperspectral reflectance from citrus grown across a gradient of soil drought levels six times, during 20 days of stress induction and 13 days of rewatering. Water stress caused Pn, Cond, and Trmmol rapid and continuous decline throughout the entire drought period. The upper layer was more sensitive to drought than middle and lower layers. Water stress could also bring continuous and dynamic changes of the mean spectral reflectance and absorptance over time. After trees were rewatered, these differences were not obvious. The original reflectance spectra of the four water stresses were surprisingly of low diversity and could not track drought responses, whereas specific hyperspectral spectral vegetation indices (SVIs) and absorption features or wavelength position variables presented great potential. The following machine-learning algorithms: random forest (RF), support vector machine (SVM), gradient boost (GDboost), and adaptive boosting (Adaboost) were used to develop a measure of photosynthesis from leaf reflectance spectra. The performance of four machine-learning algorithms were assessed, and RF algorithm yielded the highest predictive power for predicting photosynthetic parameters (R2 was 0.92, 0.89, and 0.88 for Pn, Cond, and Trmmol, respectively). Our results indicated that leaf hyperspectral reflectance is a reliable and stable method for monitoring water stress and yield increase, with great potential to be applied in large-scale orchards.
Identification and characterization of two morphologically distinct stem cell subpopulations from human urine samples
Urine-derived stem cells (USCs) have shown potentials for the treatment of skeletal and urological disorders. Based on published literature and our own data, USCs consist of heterogeneous populations of cells. In this paper, we identify and characterize two morphologically distinct subpopulations of USCs from human urine samples, named as spindle-shaped USCs (SS-USCs) and rice-shaped USCs (RS-USCs) respectively. The two subpopulations showed similar clone-forming efficiency, while SS-USCs featured faster proliferation, higher motility, and greater potential for osteogenic and adipogenic differentiation, RS-USCs showed greater potential for chondrogenic differentiation. POU5F1 was strongly expressed in both subpopulations, but MYC was weakly expressed. Both subpopulations showed similar patterns of CD24, CD29, CD34, CD44, CD73, CD90 and CD105 expression, while a higher percentage of RS-USCs were positive for CD133. SS-USCs were positive for VIM, weakly positive for SLC12A1 and UMOD, and negative for KRT18, NPHS1, AQP1 and AQP2, indicating a renal mesenchyme origin; while RS-USCs are positive for VIM, partially positive for KRT18, NPHS1, AQP1, SLC12A1 and UMOD, and negative for AQP2, indicating a nephron tubule origin. The above results can facilitate understanding of the biological characteristics of subpopulations of USCs, and provide a basis for further research and applications of such cells.
Metasurface-integrated elliptically polarized laser-pumped SERF magnetometers
The emergence of biomagnetism imaging has led to the development of ultrasensitive and compact spin-exchange relaxation-free (SERF) atomic magnetometers that promise high-resolution magnetocardiography (MCG) and magnetoencephalography (MEG). However, conventional optical components are not compatible with nanofabrication processes that enable the integration of atomic magnetometers on chips, especially for elliptically polarized laser-pumped SERF magnetometers with bulky optical systems. In this study, an elliptical-polarization pumping beam (at 795 nm) is achieved through a single-piece metasurface, which results in an SERF magnetometer with a high sensitivity reaching 10.61 fT/Hz1/2 by utilizing a 87Rb vapor cell with a 3 mm inner diameter. To achieve the optimum theoretical polarization, our design combines a computer-assisted optimization algorithm with an emerging metasurface design process. The metasurface is fabricated with 550 nm thick silicon-rich silicon nitride on a 2 × 2 cm2 SiO2 substrate and features a 22.17° ellipticity angle (a deviation from the target polarization of less than 2%) and more than 80% transmittance. This study provides a feasible approach for on-chip polarization control of future all-integrated atomic magnetometers, which will further pave the way for high-resolution biomagnetism imaging and portable atomic sensing applications.
A MADS-Box Gene CiMADS43 Is Involved in Citrus Flowering and Leaf Development through Interaction with CiAGL9
MADS-box genes are involved in various developmental processes including vegetative development, flower architecture, flowering, pollen formation, seed and fruit development. However, the function of most MADS-box genes and their regulation mechanism are still unclear in woody plants compared with model plants. In this study, a MADS-box gene (CiMADS43) was identified in citrus. Phylogenetic and sequence analysis showed that CiMADS43 is a GOA-like Bsister MADS-box gene. It was localized in the nucleus and as a transcriptional activator. Overexpression of CiMADS43 promoted early flowering and leaves curling in transgenic Arabidopsis. Besides, overexpression or knockout of CiMADS43 also showed leaf curl phenotype in citrus similar to that of CiMADS43 overexpressed in Arabidopsis. Protein–protein interaction found that a SEPALLATA (SEP)-like protein (CiAGL9) interacted with CiMADS43 protein. Interestingly, CiAGL9 also can bind to the CiMADS43 promoter and promote its transcription. Expression analysis also showed that these two genes were closely related to seasonal flowering and the development of the leaf in citrus. Our findings revealed the multifunctional roles of CiMADS43 in the vegetative and reproductive development of citrus. These results will facilitate our understanding of the evolution and molecular mechanisms of MADS-box genes in citrus.
miR156‐SPLs module regulates flowering and controls plant height by modulating gibberellin biosynthesis in citrus
Summary Plant height and optimal flowering time are key determinants of crop yield and economic value. However, the regulatory mechanisms governing these traits, particularly in woody plants, remain unclear. In this study, overexpression of a citrus microRNA156 (miR156) family member, Ci‐miR156c, resulted in significant phenotypic changes in citrus, including reduced plant height and delayed flowering. miR156‐mediated repression of SQUAMOSA PROMOTER‐BINDING PROTEIN‐LIKE (SPL) genes is a highly conserved regulatory mechanism in plants. Yeast one‐hybrid and dual‐luciferase assays, along with other related experiments, indicated that the Ci‐miR156c‐CiSPL7 module targets the bZIP transcription factor (CiFD) to regulate citrus flowering. Additionally, the Ci‐miR156c‐CiSPL6 module regulates plant height by targeting GA 20‐oxidase 2 (CiGA20ox2), a key gibberellin biosynthesis gene. The Ci‐miR156c‐CiSPL3 module also influences plant height by regulating the KNOX family gene (CiKN6), which further regulates CiGA20ox2 expression. Overexpression of CiKN6 in citrus induced dwarfism, whereas its suppression increased height in transgenic plants, reinforcing its role in plant height regulation. Exogenous gibberellin and its inhibitor treatment further confirmed that the miR156‐SPLs module regulates citrus plant height by inhibiting gibberellin biosynthesis. These findings highlight the role of the miR156‐SPLs module in controlling citrus flowering and plant height.
Transcriptome-wide identification and functional prediction of novel and flowering-related circular RNAs from trifoliate orange (Poncirus trifoliata L. Raf.)
Circular RNAs (circRNAs) play diverse roles in transcriptional control and microRNA (miRNA) function. However, little information is known about circRNAs in citrus. To identify citrus circRNAs and investigate their functional roles, high-throughput sequencing of precocious trifoliate orange (an early-flowering trifoliate orange mutant, Poncirus trifoliata L. Raf.) and its wild type was performed. A total of 558 potential circRNAs were identified by bioinformatic analysis, and 86.02 % of these were sense-overlapping circRNAs. Their sequence features, alternative circularization, and other characteristics were investigated in this study. Compared with the wild type, 176 circRNAs were identified as differentially expressed circRNAs, 61 were significantly up-regulated and 115 were down-regulated in precocious trifoliate orange, indicating that they may play an important role in the early flowering process. Alternative circularization and differential expression of some circR-NAs were verified by Sanger sequencing and real-time polymerase chain reaction. The functions of differentially expressed circRNAs and their host genes were predicted by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. We found that many differentially expressed circRNAs had abundant miRNA binding sites: 29 circRNAs were found to act as the 16 miRNA targets. Overall, these results will help to reveal the biological functions of circRNAs in growth and development of citrus.