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Premise of the Study A key question in evolutionary biology is why some clades are more successful by being widespread geographically, biome diverse, or species‐rich. To extend understanding of how shifts in area, biomes, and pollinators impact diversification in plants, we examined the relationships of these shifts to diversification across the mega‐genus Salvia. Methods A chronogram was developed from a supermatrix of anchored hybrid enrichment genomic data and targeted sequence data for over 500 of the nearly 1000 Salvia species. Ancestral areas and biomes were reconstructed using BioGeoBEARS. Pollinator guilds were scored, ancestral pollinators determined, shifts in pollinator guilds identified, and rates of pollinator switches compared. Key Results A well‐resolved phylogenetic backbone of Salvia and updated subgeneric designations are presented. Salvia originated in Southwest Asia in the Oligocene and subsequently dispersed worldwide. Biome shifts are frequent from a likely ancestral lineage utilizing broadleaf and/or coniferous forests and/or arid shrublands. None of the four species diversification shifts are correlated to shifts in biomes. Shifts in pollination system are not correlated to species diversification shifts, except for one hummingbird shift that precedes a major shift in diversification near the crown of New World subgen. Calosphace. Multiple reversals back to bee pollination occurred within this hummingbird clade. Conclusions Salvia diversified extensively in different continents, biomes, and with both bee and bird pollinators. The lack of tight correlation of area, biome, and most pollinator shifts to the four documented species diversification shifts points to other important drivers of speciation in Salvia.

Abstract Background and Aims Salvia is the largest genus within Lamiaceae, with about 980 species currently recognized. East Asia, with approx. 100 species, is one of the three major biodiversity centres of Salvia. However, relationships within this lineage remain unclear, and the staminal lever mechanism, which may represent a key innovation within the genus, has been understudied. By using six genetic markers and nearly comprehensive taxon sampling, this study attempts to elucidate relationships and examine evolutionary trends of staminal development within the East Asia (EA) Salvia clade. Methods Ninety-one taxa of EA Salvia were sampled and 34 taxa representing all other major lineages of Salvia were included for analysis. Two nuclear [internal transcribed spacer (ITS) and external transcribed spacer (ETS)] and four chloroplast (psbA–trnH, ycf1–rps15, trnL–trnF and rbcL) DNA markers were used for phylogenetic analysis employing maximum parsimony (MP), maximum likelihood (ML) and BEAST, with the latter also used to estimate divergence times. Key Results All Salvia species native to East Asia form a clade, and eight major subclades (A–G) were recognized. Subclade A, comprising two limestone endemics (S. sonchifolia and S. petrophila), is sister to the remainder of EA Salvia. Six distinct stamen types were observed within the EA clade. Stamen type A, with two fully fertile posterior thecae, only occurs in S. sonchifolia and may represent the ancestral stamen type within EA Salvia. Divergence time estimates showed that the crown of EA Salvia began to diversify approx. 17.4 million years ago. Conclusions This study supports the adoption of a broadly defined Salvia and treats EA Salvia as a subgenus, Glutinaria, recognizing eight sections within this subgenus. Stamen type A is ostensibly plesiomorphic within EA Salvia, and the other five types may have been derived from it. Staminal morphology has evolved in parallel within the EA Salvia, and staminal structure alone is inadequate to delimit infrageneric categories.

Background Oreocharis esquirolii H. Lév., a member of the Gesneriaceae family with an actinomorphic corolla, is evaluated as vulnerable and classified as a National Grade I Protected Plant. The species is endemic to Guizhou Province in southwestern China, restricted to the Longtoudashan Nature Reserve. Current research on mitochondrial genomes (mitogenomes) in Gesneriaceae plants is limited to only three species. Given the crucial role of mitochondria in plant energy metabolism and stress responses, mitogenome analyses may offer novel insights into the genetic basis of adaptive traits and contribute to understanding evolutionary processes. Therefore, in this study, we assembled and annotated the mitogenome of O. esquirolii , and performed comparative analyses to investigate structural features and variation across mitogenomes. Results The mitogenome of O. esquirolii exhibited a linear structure, consisting of 36 protein-coding genes (PCGs), 23 tRNA genes, three rRNA genes, and one pseudogene. A total of 158 repeat sequences were identified, with the majority located in intergenic regions, while a smaller fraction appeared in coding regions. Homology analysis revealed 58 plastid-derived fragments, spanning 52,103 bp and accounting for 11.45% of the mitogenome. Collinearity analysis demonstrated extensive genomic rearrangements between O. esquirolii and its close relatives, implying structural divergence during evolution. Positive selection signals were detected in seven coding genes of the O. esquirolii mitogenome, with a potential impact on environmental adaptation. Phylogenetic analysis inferred from shared mitochondrial genes presented a well-supported topology, in which O. esquirolii was closely related with Primulina hunanensis K. M. Liu & X. Z. Cai. Conclusion Overall, this study presents the first report of the complete mitogenome of O esquirolii , revealing a linear structure, extensive genomic rearrangements, and frequent plastid-derived DNA insertions. Despite structural variation, the mitogenomes of O. esquirolii remains relatively conserved at the sequence level, particularly in terms of gene content, GC content, and codon usage bias. These findings highlight dynamic genomic evolution and provide critical molecular resources for future studies on plant adaptation and species conservation.

Tropidia, a type genus of Tropidieae (Orchidaceae, Epidendroideae), represents an important lineage for investigating plastome evolution and phylogenetic relationships within Epidendroideae. Despite its importance, the lack of available plastid genomic data has hindered comprehensive analyses of its genome structure and phylogenetic relationships. In this study, we assembled and characterized the complete plastid genomes of Tropidia angulosa and T. nipponica, providing valuable insights into plastome evolution and phylogenetic placement of Tropidieae. The plastomes of T. angulosa and T. nipponica exhibited a highly conserved quadripartite structure, sharing similar genomic size (161,395 bp and 160,801 bp) and GC content (36.87% and 36.90%). Both plastomes contained identical gene content and gene order, with 79 protein-coding genes (PCGs), 30 tRNA genes, and four rRNA genes. A total of 169 simple-sequence repeats (SSRs) and 92 long-sequence repeats (LSRs) were identified, most of which were distributed in large single-copy (63.91% and 66.30%) and non-coding regions (83.43% and 65.22%). Comparative plastomes analyses revealed the overall structural stability among photosynthetic lineages, whereas structural variation was primarily detected in mycoheterotrophic lineages. Phylogenomic reconstruction based on plastid-coding sequences revealed that Tropidieae occupies a relatively isolated phylogenetic position within Epidendroideae. These findings contribute to a more comprehensive understanding of plastome evolution and the phylogenetic framework of Epidendroideae.

Sect. Drymosphace is one of eight sections of Salvia subg. Glutinaria and includes 13 species and one dubious species that hold great economic value. Although the section is well supported, interspecific relationships remain unresolved. Moreover, most of this section’s plastome information remains unknown. In this study, we sequenced and assembled eight sect. Drymosphace plastomes and conducted comparative analyses within this section. The length of plastid genome sequences ranged from 151,330 bp to 151,614 bp, with 80 protein-coding, 30 tRNA, and four rRNA genes being annotated. The plastomes were found to be as conservative as other Lamiaceae species, showing high consistency and similarity in terms of gene content, order, and structure. Within the sect. Drymosphace, single-copy regions were more variable than IR regions, and the intergenic regions were more variable than the coding regions; nine hypervariable regions were detected, and some of them may be useful for the phylogenetic analysis of Salvia. The topologies inferred from all of the data sets indicated that sect. Drymosphace was monophyletic and that S. honania was sister to S. meiliensis. Compared to previous studies involving more sect. Drymosphace species, phylogenomic analyses can improve the phylogenetic resolution considerably.

Oreocharis esquirolii, a member of Gesneriaceae, is known as Thamnocharis esquirolii, which has been regarded a synonym of the former. The species is endemic to Guizhou, southwestern China, and is evaluated as vulnerable (VU) under the International Union for Conservation of Nature (IUCN) criteria. Until now, the sequence and genome information of O. esquirolii remains unknown. In this study, we assembled and characterized the complete chloroplast (cp) genome of O. esquirolii using Illumina sequencing data for the first time. The total length of the cp genome was 154,069 bp with a typical quadripartite structure consisting of a pair of inverted repeats (IRs) of 25,392 bp separated by a large single copy region (LSC) of 85,156 bp and a small single copy region (SSC) of18,129 bp. The genome comprised 114 unique genes with 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Thirty-one repeat sequences and 74 simple sequence repeats (SSRs) were identified. Genome alignment across five plastid genomes of Gesneriaceae indicated a high sequence similarity. Four highly variable sites (rps16-trnQ, trnS-trnG, ndhF-rpl32, and ycf 1) were identified. Phylogenetic analysis indicated that O. esquirolii grouped together with O. mileensis, supporting resurrection of the name Oreocharis esquirolii from Thamnocharisesquirolii. The complete cp genome sequence will contribute to further studies in molecular identification, genetic diversity, and phylogeny.

Salvia penghuana , a new species from Guizhou Province of southwestern China, is described and illustrated. Morphologically, Salvia penghuana is similar to S. filicifolia , but can be easily distinguished from the latter by ovate-lanceolate bracts, purple corolla, and foot-shaped fused lower arms of connective. In addition, S. penhuana is morphologically similar to S. cavaleriei , but differs by having 3–4-pinnate leave, ovate-lanceolate bracts, puberulent calyx, and longer upper arms of connective. Based on the fibril root, small calyx and corolla, and completely reduced posterior thecae, S. penghuana should be placed in section Sobiso of subg. Glutinaria.

Oxalis xishuiensis , a new species of Oxalidaceae from Danxia landforms of Xishui County, Guizhou, China, is described and illustrated. It is morphologically similar to O. wulingensis by the two lateral leaflets arranged at about 180° angle and oblong pink petals with lilac veins, but clearly differs from the latter by leaflets almost as long as wide, obliquely obcordate lateral leaflets, shorter peduncles, longer capsule (1.2–1.5 cm vs. 0.5–0.7 cm) and alveolate seeds.

Blume, the type species of Blume, belongs to the tribe Collabieae of the subfamily Epidendroideae of Orchidaceae. In this study, we sequenced, assembled, and analyzed the complete chloroplast genome of . The result showed that the complete chloroplast genome of was 158,175 bp in size, consisting of a large single-copy (LSC) region of 87,235 bp, a small single-copy (SSC) region of 18,384 bp, and a pair of inverted repeats (IRs) of 26,278 bp. The chloroplast genome encoded 113 unique genes, comprising 80 protein-coding genes, 29 tRNA genes, and four rRNA genes. Phylogenetic analysis inferred from the complete chloroplast genome indicated that was closely related to Blume. This study provides genomic resources helpful for further phylogenetic and biodiversity research on .

Heteropolygonatum ginfushanicum is an endemic epiphytic herb in China. The complete chloroplast (cp) genome of H. ginfushanicum is reported in this study. The total length of the cp genome is 155,508 bp with a typical quadripartite structure consisting of a large single copy region (LSC) of 84,552 bp and a small single copy region (SSC) of 18,528 bp, separated by a pair of 26,214 bp inverted repeats (IRs). It encodes a total of 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Phylogenetic analysis indicated that H. ginfushanicum is sister to Heteropolygonatum marmoratum within subfamily Nolinoideae.