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924
result(s) for
"Huang, Cheng-Wei"
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Strain-engineered artificial atom as a broad-spectrum solar energy funnel
2012
An optoelectronic material with a spatially varying bandgap that is tunable is highly desirable for use in photovoltaics, photocatalysis and photodetection. Elastic strain has the potential to be used to achieve rapid and reversible tuning of the bandgap. However, as a result of plasticity or fracture, conventional materials cannot sustain a high enough elastic strain to create sufficient changes in their physical properties. Recently, an emergent class of materials—named ‘ultrastrength materials’—have been shown to avoid inelastic relaxation up to a significant fraction of their ideal strength. Here, we illustrate theoretically and computationally that elastic strain is a viable agent for creating a continuously varying bandgap profile in an initially homogeneous, atomically thin membrane. We propose that a photovoltaic device made from a strain-engineered MoS
2
monolayer will capture a broad range of the solar spectrum and concentrate excitons or charge carriers.
A highly strained ultrathin membrane of MoS
2
could lead to the creation of a solar funnel, a new form of solar cell which absorbs a much broader range of the solar spectrum that a usual single junction device.
Journal Article
Multisystem Inflammatory Syndrome after SARS-CoV-2 Infection and COVID-19 Vaccination
by
O’Brien, Christopher M.
,
Castillo, Rhina D.
,
Salzman, Mark B.
in
Adults
,
Coronaviruses
,
COVID-19
2021
We report 3 patients in California, USA, who experienced multisystem inflammatory syndrome (MIS) after immunization and severe acute respiratory syndrome coronavirus 2 infection. During the same period, 3 adults who were not vaccinated had MIS develop at a time when ≈7% of the adult patient population had received >1 vaccine.
Journal Article
Genome-wide profiling in colorectal cancer identifies PHF19 and TBC1D16 as oncogenic super enhancers
Colorectal cancer is one of the most common cancers in the world. Although genomic mutations and single nucleotide polymorphisms have been extensively studied, the epigenomic status in colorectal cancer patient tissues remains elusive. Here, together with genomic and transcriptomic analysis, we use ChIP-Seq to profile active enhancers at the genome wide level in colorectal cancer paired patient tissues (tumor and adjacent tissues from the same patients). In total, we sequence 73 pairs of colorectal cancer tissues and generate 147 H3K27ac ChIP-Seq, 144 RNA-Seq, 147 whole genome sequencing and 86 H3K4me3 ChIP-Seq samples. Our analysis identifies 5590 gain and 1100 lost variant enhancer loci in colorectal cancer, and 334 gain and 121 lost variant super enhancer loci. Multiple key transcription factors in colorectal cancer are predicted with motif analysis and core regulatory circuitry analysis. Further experiments verify the function of the super enhancers governing
PHF19
and
TBC1D16
in regulating colorectal cancer tumorigenesis, and KLF3 is identified as an oncogenic transcription factor in colorectal cancer. Taken together, our work provides an important epigenomic resource and functional factors for epigenetic studies in colorectal cancer.
Active enhancers are still understudied in colorectal cancers (CRC). Here the authors analyse active enhancers in CRC patients using genomics, transcriptomics, and epigenomics, identifying and validating variant super-enhancer loci as well as KLF3 as a relevant transcription factor.
Journal Article
Integrating machine learning and protein–ligand interaction profiling for the discovery of METTL3 inhibitors
by
Hsieh, Hsing-Pang
,
Huang, Wei-Cheng
,
Tung, Chun-Wei
in
631/114
,
631/154
,
Acute myeloid leukemia
2025
RNA modifications are critical in regulating gene expression and cell functions by affecting RNA stability, splicing, translation, and degradation. The catalytic core of N
6
-adenosine-methyltransferase catalytic subunit METTL3 has emerged as a key enzyme in tumorigenesis by enhancing the translation efficiency of oncogenic transcripts, which is a promising therapeutic target for cancers, including acute myeloid leukemia. In this study, we presented a novel METTL3 inhibitory bioactivity (pIC
50
) prediction model (ML3-mix-DPLIFE) by combining machine learning, protein–ligand docking, and protein–ligand interaction analysis, through encoding the conventional physicochemical properties, chemical fingerprint, and the docking-based protein–ligand interaction features (DPLIFE) with leveraging auto-stacking 6 algorithms. A feature selection algorithm further optimized the model (ML3-mix-DPLIFE-FS) and obtained a promising mean squared error (
MSE
) of 0.261 and a Pearson’s correlation coefficient (
CC
) of 0.853 on an independent test dataset, and identified 8 residues critical for ligand interactions with METTL3. To further test the model, the pIC
50
s of recently reported inhibitors were predicted using the ML3-mix-DPLIFE-FS model, and a good
MSE
of 0.418 and
CC
of 0.727 were obtained. This innovative strategy seamlessly integrates machine learning prediction with structural biology insights and reveals a novel way to identify key protein–ligand interactions for further structural rational drug design.
Journal Article
The effect of plant water storage on water fluxes within the coupled soil-plant system
by
Interactions Sol Plante Atmosphère (UMR ISPA) ; Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)
,
Department of Biological Sciences ; The Open University [Milton Keynes] (OU)
,
Ward, Eric J
in
Carbon - metabolism
,
Drought
,
drought resilience
2017
In addition to buffering plants from water stress during severe droughts, plant water storage (PWS) alters many features of the spatio-temporal dynamics of water movement in the soil-plant system. How PWS impacts water dynamics and drought resilience is explored using a multi-layer porous media model. The model numerically resolves soil-plant hydrodynamics by coupling them to leaf-level gas exchange and soil-root interfacial layers. Novel features of the model are the considerations of a coordinated relationship between stomatal aperture variation and whole-system hydraulics and of the effects of PWS and nocturnal transpiration (Fe,night) on hydraulic redistribution (HR) in the soil. The model results suggest that daytime PWS usage and Fe,night generate a residual water potential gradient (Δψp,night) along the plant vascular system overnight. This Δψp,night represents a non-negligible competing sink strength that diminishes the significance of HR. Considering the co-occurrence of PWS usage and HR during a single extended dry-down, a wide range of plant attributes and environmental/soil conditions selected to enhance or suppress plant drought resilience is discussed. When compared with HR, model calculations suggest that increased root water influx into plant conducting-tissues overnight maintains a more favorable water status at the leaf, thereby delaying the onset of drought stress.
Journal Article
MLL3 suppresses tumorigenesis through regulating TNS3 enhancer activity
2021
MLL3 is a histone H3K4 methyltransferase that is frequently mutated in cancer, but the underlying molecular mechanisms remain elusive. Here, we found that
MLL3
depletion by CRISPR/sgRNA significantly enhanced cell migration, but did not elevate the proliferation rate of cancer cells. Through RNA-Seq and ChIP-Seq approaches, we identified
TNS3
as the potential target gene for MLL3.
MLL3
depletion caused downregulation of H3K4me1 and H3K27ac on an enhancer ~ 7 kb ahead of TNS3. 3C assay indicated the identified enhancer interacts with
TNS3
promoter and repression of enhancer activity by dCas9-KRAB system impaired
TNS3
expression. Exogenous expression of
TNS3
in
MLL3
deficient cells completely blocked the enhanced cell migration phenotype. Taken together, our study revealed a novel mechanism for MLL3 in suppressing cancer, which may provide novel targets for diagnosis or drug development.
Journal Article
A chromosome-scale genome assembly of Castanopsis hystrix provides new insights into the evolution and adaptation of Fagaceae species
2023
Fagaceae species dominate forests and shrublands throughout the Northern Hemisphere, and have been used as models to investigate the processes and mechanisms of adaptation and speciation. Compared with the well-studied genus Quercus , genomic data is limited for the tropical-subtropical genus Castanopsis . Castanopsis hystrix is an ecologically and economically valuable species with a wide distribution in the evergreen broad-leaved forests of tropical-subtropical Asia. Here, we present a high-quality chromosome-scale reference genome of C. hystrix , obtained using a combination of Illumina and PacBio HiFi reads with Hi-C technology. The assembled genome size is 882.6 Mb with a contig N50 of 40.9 Mb and a BUSCO estimate of 99.5%, which are higher than those of recently published Fagaceae species. Genome annotation identified 37,750 protein-coding genes, of which 97.91% were functionally annotated. Repeat sequences constituted 50.95% of the genome and LTRs were the most abundant repetitive elements. Comparative genomic analysis revealed high genome synteny between C. hystrix and other Fagaceae species, despite the long divergence time between them. Considerable gene family expansion and contraction were detected in Castanopsis species. These expanded genes were involved in multiple important biological processes and molecular functions, which may have contributed to the adaptation of the genus to a tropical-subtropical climate. In summary, the genome assembly of C. hystrix provides important genomic resources for Fagaceae genomic research communities, and improves understanding of the adaptation and evolution of forest trees.
Journal Article
Soluble Dipeptidyl Peptidase-4 Induces Fibroblast Activation Through Proteinase-Activated Receptor-2
2020
Fibroblasts are the chief secretory cells of the extracellular matrix (ECM) responsible for basal deposition and degradation of the ECM under normal conditions. During stress, fibroblasts undergo continuous activation, which is defined as the differentiation of fibroblasts into myofibroblasts, a cell type with an elevated capacity for secreting ECM proteins. Dipeptidyl peptidase-4 (DPP4) is a ubiquitously expressed transmembrane glycoprotein and exerts effects that are both dependent and independent of its enzymatic activity. DPP4 has been demonstrated to define fibroblast populations in human skin biopsies of systemic sclerosis. Shedding of DPP4 from different tissues into the circulation appears to be involved in the pathogenesis of the diseases. The mechanism underlying soluble DPP4–induced dermal fibrosis has not been clearly determined. The effects of DPP4 on murine 3T3 fibroblasts and human dermal fibroblasts were evaluated by measuring the expression of fibrotic proteins, such as α-SMA and collagen. Soluble DPP4 stimulated the activation of fibroblasts in a dose-dependent manner by activating nuclear factor-kappa B (NF-κB) and suppressor of mothers against decapentaplegic (SMAD) signaling. Blocking proteinase-activated receptor-2 (PAR2) abrogated the DPP4-induced activation of NF-κB and SMAD and expression of fibrosis-associated proteins in fibroblasts. Linagliptin, a clinically available DPP4 inhibitor, was observed to abrogate the soluble DPP4–induced expression of fibrotic proteins. This study demonstrated the mechanism underlying soluble DPP4, which activated NF-κB and SMAD signaling through PAR2, leading to fibroblast activation. Our data extend the current view of soluble DPP4. Elevated levels of circulating soluble DPP4 may contribute to one of the mediators that induce dermal fibrosis in patients.
Journal Article
Construction of Ultrastable Conjugated Microporous Polymers Containing Thiophene and Fluorene for Metal Ion Sensing and Energy Storage
2022
In this study, we have used the one-pot polycondensation method to prepare novel 2D conjugated microporous polymers (Th-F-CMP) containing thiophene (Th) and fluorene (Fl) moieties through the Suzuki cross-coupling reaction. The thermogravimetric analysis (TGA) data revealed that Th-F-CMP (Td10 = 418 °C, char yield: 53 wt%). Based on BET analyses, the Th-F-CMP sample displayed a BET specific surface area of 30 m2 g−1, and the pore size was 2.61 nm. Next, to show the effectiveness of our study, we utilized Th-F-CMP as a fluorescence probe for the selective detection of Fe3+ ions at neutral pH with a linear range from 2.0 to 25.0 nM (R2 = 0.9349). Furthermore, the electrochemical experimental studies showed that the Th-F-CMP framework had a superior specific capacity of 84.7 F g−1 at a current density of 0.5 A g−1 and outstanding capacitance retention (88%) over 2000 cycles.
Journal Article
Community-Based Screening for Hepatitis B and C Infectivity Using Two Quantitative Antigens to Identify Endemic Townships
2022
Screening and linkage to care are essential to achieve viral hepatitis elimination before 2030. The accurate identification of endemic areas is important for controlling diseases with geographic aggregation. Viral activity drives prognosis of chronic hepatitis B and hepatitis C virus infection. This screening was conducted in Chiayi County from 2018–2019. All residents aged 30 years or older were invited to participate in quantitative HBsAg (qHBsAg) and HCV Ag screening. Among the 4010 participants (male:female = 1630:2380), the prevalence of qHBsAg and HCV Ag was 9.9% (396/4010) and 4.1% (163/4010), respectively. High-prevalence townships were identified, three for qHBsAg > 15% and two for HCV Ag > 10%. The age-specific prevalence of qHBsAg was distributed in an inverse U-shape with a peak (16.0%, 68/424) for subjects in their 40 s; for HCV, prevalence increased with age. Concentrations of qHBsAg < 200 IU/mL were found in 54% (214/396) of carriers. The rate of oral antiviral treatment for HCV was 75.5% (114/151), with subjects younger than 75 years tending to undergo treatment (85.6% vs. 57.4%, p < 0.001). QHBsAg and HCV Ag core antigens can reflect the concentration of the viral load, which serves as a feasible screening tool. Using quantitative antigen screening for hepatitis B and C in community-based screening, two hyperendemic townships were identified from an endemic county.
Journal Article