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result(s) for
"Hull, Robert (Robert V.)"
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Supporting and educating traumatized students
by
Rossen, Eric A.
,
Hull, Robert (Robert V.)
in
Aufsatzsammlung
,
Educational psychology
,
Psychic trauma -- Treatment
2013,2012
Combining knowledge of the cognitive and behavioral effects of trauma, evidence-based interventions, educational best practices, and the experiences of veteran educators, Supporting and Educating Traumatized Students: A Guide for School-Based Professionals presents a new framework for assisting students with a history of trauma.
Virus taxonomy in the age of metagenomics
by
Koonin, Eugene V
,
Zerbini, F. Murilo
,
Davison, Andrew J
in
631/114/1386
,
631/181/2480
,
631/326/2565/855
2017
The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the comprehensive characterization of the global virome. In this Consensus Statement article, we consider the rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy, and present proposals that have been endorsed by the Executive Committee of the ICTV.
Journal Article
Consensus statement: Virus taxonomy in the age of metagenomics
by
Suttle, Curtis A
,
Koonin, Eugene V
,
Breitbart, Mya
in
Base Sequence
,
Base Sequence - genetics
,
Biodiversity
2017
The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the comprehensive characterization of the global virome. In this Consensus Statement article, we consider the rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy, and present proposals that have been endorsed by the Executive Committee of the ICTV.
Journal Article
Structural Dynamics and Activity of B19V VP1u during the pHs of Cell Entry and Endosomal Trafficking
by
Berry, Luke
,
Lakshmanan, Renuk V.
,
Hull, Joshua A.
in
Acidification
,
Amino acids
,
animal pathogens
2022
Parvovirus B19 (B19V) is a human pathogen that is the causative agent of fifth disease in children. It is also known to cause hydrops in fetuses, anemia in AIDS patients, and transient aplastic crisis in patients with sickle cell disease. The unique N-terminus of Viral Protein 1 (VP1u) of parvoviruses, including B19V, exhibits phospholipase A2 (PLA2) activity, which is required for endosomal escape. Presented is the structural dynamics of B19V VP1u under conditions that mimic the pHs of cell entry and endosomal trafficking to the nucleus. Using circular dichroism spectroscopy, the receptor-binding domain of B19V VP1u is shown to exhibit an α-helical fold, whereas the PLA2 domain exhibits a probable molten globule state, both of which are pH invariant. Differential scanning calorimetry performed at endosomal pHs shows that the melting temperature (Tm) of VP1u PLA2 domain is tuned to body temperature (37 °C) at pH 7.4. In addition, PLA2 assays performed at temperatures ranging from 25–45 °C show both a temperature and pH-dependent change in activity. We hypothesize that VP1u PLA2 domain differences in Tm at differing pHs have enabled the virus to “switch on/off” the phospholipase activity during capsid trafficking. Furthermore, we propose the environment of the early endosome as the optimal condition for endosomal escape leading to B19V infection.
Journal Article
Neuropathy target esterase impairments cause Oliver–McFarlane and Laurence–Moon syndromes
2015
Background Oliver–McFarlane syndrome is characterised by trichomegaly, congenital hypopituitarism and retinal degeneration with choroidal atrophy. Laurence–Moon syndrome presents similarly, though with progressive spinocerebellar ataxia and spastic paraplegia and without trichomegaly. Both recessively inherited disorders have no known genetic cause. Methods Whole-exome sequencing was performed to identify the genetic causes of these disorders. Mutations were functionally validated in zebrafish pnpla6 morphants. Embryonic expression was evaluated via in situ hybridisation in human embryonic sections. Human neurohistopathology was performed to characterise cerebellar degeneration. Enzymatic activities were measured in patient-derived fibroblast cell lines. Results Eight mutations in six families with Oliver–McFarlane or Laurence–Moon syndrome were identified in the PNPLA6 gene, which encodes neuropathy target esterase (NTE). PNPLA6 expression was found in the developing human eye, pituitary and brain. In zebrafish, the pnpla6 curly-tailed morphant phenotype was fully rescued by wild-type human PNPLA6 mRNA and not by mutation-harbouring mRNAs. NTE enzymatic activity was significantly reduced in fibroblast cells derived from individuals with Oliver–McFarlane syndrome. Intriguingly, adult brain histology from a patient with highly overlapping features of Oliver–McFarlane and Laurence–Moon syndromes revealed extensive cerebellar degeneration and atrophy. Conclusions Previously, PNPLA6 mutations have been associated with spastic paraplegia type 39, Gordon–Holmes syndrome and Boucher–Neuhäuser syndromes. Discovery of these additional PNPLA6-opathies further elucidates a spectrum of neurodevelopmental and neurodegenerative disorders associated with NTE impairment and suggests a unifying mechanism with diagnostic and prognostic importance.
Journal Article
Soil Metals Analysis Using Laser-Induced Breakdown Spectroscopy (LIBS)
by
Essington, Michael E
,
Stewart, Melanie A
,
Melnichenko, Galina V
in
Agronomy. Soil science and plant productions
,
aluminum
,
Analytical chemistry
2009
Laser-induced breakdown spectroscopy (LIBS) is an elemental analysis technique that is based on the measurement of atomic emissions generated on a sample surface by a laser-induced microplasma. Although often recognized in the literature as a well-established analytical technique, LIBS remains untested relative to the quantitative analysis of elements in chemically complex matrices, such as soils. The objective of this study was to evaluate the capabilities of LIBS relative to the elemental characterization of surface soils. Approximately 65 surface soil samples from the Pond Creek watershed in east Tennessee were collected and subjected to total dissolution and elemental analysis by inductively coupled argon plasma-optical emission spectroscopy (ICP-OES). The samples were analyzed by LIBS using a Nd:YAG laser at 532 nm, with a beam energy of 25 mJ per pulse, a pulse width of 5 ns, and a repetition rate of 10 Hz. The wavelength range for the LIBS spectra collection was 200 to 600 nm, with a resolution of 0.03 nm. Elemental spectral lines were identified through the analysis of analytical reagent-grade chemicals and the NIST and Kurucz spectral databases. The elements that dominated the LIBS spectra were Al, Ca, Fe, and Mg. In addition, emission lines for Ti, Ba, Na, Cu, and Mn were isolated. The emission lines of Cr, Ni, and Zn, which were >100 mg kg-1 in numerous soil samples, were not detected. Further, spectral emission lines for P and K are >600 nm, eliminating them from LIBS analysis. The integrated peak areas of interference-free elemental emission lines were determined, then normalized to the area of the 288.16 nm Si(I) emission (internal standard) to reduce the variability between replicate analyses. The normalized spectral areas, coupled with linear regression (standard curves for single wavelength response) and multivariate techniques (chemometrics and multiple wavelengths), were used to predict ICP-OES elemental data. In general, the quantitative capabilities of LIBS proved disappointing. Detection and quantitation were generally restricted to those elements with concentrations > 0.5 g kg-1. The correlation between LIBS response and elemental content was poor (r < 0.98). Further, the relative errors of prediction for the LIBS-detected elements were less than acceptable for an analytical technique (<20%), ranging from 20 to 40% using linear regression analysis, and from 18 to 48% using partial least squares analysis. Based on these findings, the analytical capability of the LIBS method for soil metals analysis should be considered questionable.
Journal Article
Fracture fixation in the operative management of hip fractures (FAITH): an international, multicentre, randomised controlled trial
2017
Reoperation rates are high after surgery for hip fractures. We investigated the effect of a sliding hip screw versus cancellous screws on the risk of reoperation and other key outcomes.
For this international, multicentre, allocation concealed randomised controlled trial, we enrolled patients aged 50 years or older with a low-energy hip fracture requiring fracture fixation from 81 clinical centres in eight countries. Patients were assigned by minimisation with a centralised computer system to receive a single large-diameter screw with a side-plate (sliding hip screw) or the present standard of care, multiple small-diameter cancellous screws. Surgeons and patients were not blinded but the data analyst, while doing the analyses, remained blinded to treatment groups. The primary outcome was hip reoperation within 24 months after initial surgery to promote fracture healing, relieve pain, treat infection, or improve function. Analyses followed the intention-to-treat principle. This study was registered with ClinicalTrials.gov, number NCT00761813.
Between March 3, 2008, and March 31, 2014, we randomly assigned 1108 patients to receive a sliding hip screw (n=557) or cancellous screws (n=551). Reoperations within 24 months did not differ by type of surgical fixation in those included in the primary analysis: 107 (20%) of 542 patients in the sliding hip screw group versus 117 (22%) of 537 patients in the cancellous screws group (hazard ratio [HR] 0·83, 95% CI 0·63–1·09; p=0·18). Avascular necrosis was more common in the sliding hip screw group than in the cancellous screws group (50 patients [9%] vs 28 patients [5%]; HR 1·91, 1·06–3·44; p=0·0319). However, no significant difference was found between the number of medically related adverse events between groups (p=0·82; appendix); these events included pulmonary embolism (two patients [<1%] vs four [1%] patients; p=0·41) and sepsis (seven [1%] vs six [1%]; p=0·79).
In terms of reoperation rates the sliding hip screw shows no advantage, but some groups of patients (smokers and those with displaced or base of neck fractures) might do better with a sliding hip screw than with cancellous screws.
National Institutes of Health, Canadian Institutes of Health Research, Stichting NutsOhra, Netherlands Organisation for Health Research and Development, Physicians' Services Incorporated.
Journal Article
Variants in CFAP410 cause a range of retinal and skeletal phenotypes
by
Duncan, Jacque L.
,
Birch, David
,
Berger, Wolfgang
in
631/208/1516
,
631/208/2489/144
,
692/4017
2025
Ciliopathies are associated with a range of phenotypes including retinal degeneration and skeletal abnormalities. We present a retrospective study of 49 patients with variants in Cilia and Flagella Associated Protein 410 (
CFAP410
) from multiple ophthalmic centers across the world. Common clinical features included early-onset reduced visual acuity, photophobia, and delayed light-to-dark adaptation. A cone-rod dystrophy pattern was observed roughly two times more commonly than rod-cone dystrophy. A minority of patients (22.4%) presented with skeletal abnormalities consistent with axial spondylometaphyseal dysplasia (SMDAX). Patients with the most severe ophthalmic and skeletal phenotypes had disease-associated variants within conserved leucine-rich regions of
CFAP410
, and the structural effects of these variants were modelled using ChimeraX. This report furthers our understanding of
CFAP410
-associated clinical phenotypes such as retinal dystrophy and skeletal dysplasia.
Journal Article
Comparison of 1.5 and 3.0 T for Contrast-Enhanced Pulmonary Magnetic Resonance Angiography
by
Eisner, Robert L.
,
Leeper, Kenneth V.
,
Hull, Russell D.
in
Aorta, Thoracic - pathology
,
Clinical Trials, Phase III as Topic - statistics & numerical data
,
Contrast Media
2012
Objective: In a recent multi-center trial of gadolinium contrast-enhanced magnetic resonance angiography (Gd-MRA) for diagnosis of acute pulmonary embolism (PE), two centers utilized a common MRI platform though at different field strengths (1.5T and 3T) and realized a signal-to-noise gain with the 3T platform. This retrospective analysis investigates this gain in signal-to-noise of pulmonary vascular targets. Methods: Thirty consecutive pulmonary MRA examinations acquired on a 1.5T system at one institution were compared to 30 consecutive pulmonary MRA examinations acquired on a 3T system at a different institution. Both systems were from the same MRI manufacturer and both used the same Gd-MRA pulse sequence, although there were some protocol adjustments made due to field strength differences. Region-of-interests were manually defined on the main pulmonary artery, 4 pulmonary veins, thoracic aorta, and background lung for objective measurement of signal-to-noise, contrast-to-noise, and bolus timing bias between centers. Results: The 3T pulmonary MRA protocol achieved higher spatial resolution yet maintained significantly higher signal-to-noise ratio (≥13%, p = 0.03) in the main pulmonary vessels relative to 1.5T. There was no evidence of operator bias in bolus timing or patient hemodynamic differences between groups. Conclusion: Relative to 1.5T, higher spatial resolution Gd-MRA can be achieved at 3T with a sustained or greater signal-to-noise ratio of enhanced vasculature.
Journal Article