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result(s) for
"Huskens, Jurriaan"
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Exploring the programmability of autocatalytic chemical reaction networks
by
Huskens, Jurriaan
,
Wong, Albert S. Y.
,
Kriukov, Dmitrii V.
in
639/638/440/950
,
639/638/541
,
639/638/77
2024
Networks of chemical reactions exhibit emergent properties under out-of-equilibrium conditions. Recent advances in systems chemistry demonstrate that networks with sufficient chemical complexity can be harnessed to emulate properties important for neuromorphic computing. In all examples, autocatalysis appears an essential element for facilitating the nonlinear integration of the input and self-regulatory abilities in the output. How this chemical analogue of a positive feedback mechanism can be controlled in a programmable manner is, however, unexplored. Here, we develop a strategy that uses metal ions (Ca
2+
, La
3+
, and Nd
3+
) to control the rate of a trypsin-catalysed autocatalytic reaction network. We demonstrate that this type of control allows for tuning the kinetics in the network, thereby changing the nature of the positive feedback. The simulations and experiments reveal that an input with one or more metal ions allow for temporal and history-dependent outputs that can be mapped onto a variety of mathematical functions.
Networks of chemical reactions exhibit emergent properties under out-of-equilibrium conditions and can be utilized to emulate properties important for neuromorphic computing. Here, the authors report a strategy that uses metal ions (Ca
2+
, La
3+
, and Nd
3+
) to control the rate of a trypsin catalysed autocatalytic reaction network, with temporal and history dependent outputs that can be mapped onto a variety of mathematical functions.
Journal Article
Molecular photoswitches mediating the strain-driven disassembly of supramolecular tubules
by
Bochicchio, Davide
,
Stuart, Marc C. A.
,
Katsonis, Nathalie
in
Architecture
,
Chemistry
,
Chemists
2017
Chemists have created molecular machines and switches with specific mechanical responses that were typically demonstrated in solution, where mechanically relevant motion is dissipated in the Brownian storm. The next challenge consists of designing specific mechanisms through which the action of individual molecules is transmitted to a supramolecular architecture, with a sense of directionality. Cellular microtubules are capable of meeting such a challenge. While their capacity to generate pushing forces by ratcheting growth is well known, conversely these versatile machines can also pull microscopic objects apart through a burst of their rigid tubular structure. One essential feature of this disassembling mechanism is the accumulation of strain in the tubules, which develops when tubulin dimers change shape, triggered by a hydrolysis event. We envision a strategy toward supramolecular machines generating directional pulling forces by harnessing the mechanically purposeful motion of molecular switches in supramolecular tubules. Here, we report on wholly synthetic, water-soluble, and chiral tubules that incorporate photoswitchable building blocks in their supramolecular architecture. Under illumination, these tubules display a nonlinear operation mode, by which light is transformed into units of strain by the shape changes of individual switches, until a threshold is reached and the tubules unleash the strain energy. The operation of this wholly synthetic and stripped-down system compares to the conformational wave by which cellular microtubules disassemble. Additionally, atomistic simulations provide molecular insight into how strain accumulates to induce destabilization. Our findings pave the way toward supramolecular machines that would photogenerate pulling forces, at the nanoscale and beyond.
Journal Article
Au Nanoparticle-Based Amplified DNA Detection on Poly-l-lysine Monolayer-Functionalized Electrodes
2022
Affinity sensing of nucleic acids is among the most investigated areas in biosensing due to the growing importance of DNA diagnostics in healthcare research and clinical applications. Here, we report a simple electrochemical DNA detection layer, based on poly-l-lysine (PLL), in combination with gold nanoparticles (AuNPs) as a signal amplifier. The layer shows excellent reduction of non-specific binding and thereby high contrast between amplified and non-amplified signals with functionalized AuNPs; the relative change in current was 10-fold compared to the non-amplified signal. The present work may provide a general method for the detection of tumor markers based on electrochemical DNA sensing.
Journal Article
Surface Modification with Control over Ligand Density for the Study of Multivalent Biological Systems
2020
In the study of multivalent interactions at interfaces, as occur for example at cell membranes, the density of the ligands or receptors displayed at the interface plays a pivotal role, affecting both the overall binding affinities and the valencies involved in the interactions. In order to control the ligand density at the interface, several approaches have been developed, and they concern the functionalization of a wide range of materials. Here, different methods employed in the modification of surfaces with controlled densities of ligands are being reviewed. Examples of such methods encompass the formation of self‐assembled monolayers (SAMs), supported lipid bilayers (SLBs) and polymeric layers on surfaces. Particular emphasis is given to the methods employed in the study of different types of multivalent biological interactions occurring at the functionalized surfaces and their working principles. Play it again, SAM: An overview of various surface functionalization methods that allow control over the ligand density is provided, with a focus on the study of multivalent interactions at two‐dimensional interfaces.
Journal Article
Spatial decoupling of light absorption and catalytic activity of Ni–Mo-loaded high-aspect-ratio silicon microwire photocathodes
by
Tiggelaar, Roald M.
,
Berenschot, Erwin
,
Tas, Niels R.
in
639/4077/909/4086/4087
,
639/4077/909/4101/4050
,
639/4077/909/4101/4102
2018
A solar-driven photoelectrochemical cell provides a promising approach to enable the large-scale conversion and storage of solar energy, but requires the use of Earth-abundant materials. Earth-abundant catalysts for the hydrogen evolution reaction, for example nickel–molybdenum (Ni–Mo), are generally opaque and require high mass loading to obtain high catalytic activity, which in turn leads to parasitic light absorption for the underlying photoabsorber (for example silicon), thus limiting production of hydrogen. Here, we show the fabrication of a highly efficient photocathode by spatially and functionally decoupling light absorption and catalytic activity. Varying the fraction of catalyst coverage over the microwires, and the pitch between the microwires, makes it possible to deconvolute the contributions of catalytic activity and light absorption to the overall device performance. This approach provided a silicon microwire photocathode that exhibited a near-ideal short-circuit photocurrent density of 35.5 mA cm
−2
, a photovoltage of 495 mV and a fill factor of 62% under AM 1.5G illumination, resulting in an ideal regenerative cell efficiency of 10.8%.
Catalysts are required to increase the rate of H
2
evolution over silicon photocathodes, but their presence can lead to parasitic light absorption. Here, the authors explore the contributions of catalysts and light absorption to the overall performance of Si microwires, depositing Ni–Mo catalysts spatioselectively to optimize efficiency.
Journal Article
Size-controlled and redox-responsive supramolecular nanoparticles
by
Huskens, Jurriaan
,
Mejia-Ariza, Raquel
,
Kronig, Gavin A
in
Chemistry
,
Drug delivery
,
Electrostatic properties
2015
Control over the assembly and disassembly of nanoparticles is pivotal for their use as drug delivery vehicles. Here, we aim to form supramolecular nanoparticles (SNPs) by combining advantages of the reversible assembly properties of SNPs using host–guest interactions and of a stimulus-responsive moiety. The SNPs are composed of a core of positively charged poly(ethylene imine) grafted with β-cyclodextrin (CD) and a positively charged ferrocene (Fc)-terminated poly(amidoamine) dendrimer, with a monovalent stabilizer at the surface. Fc was chosen for its loss of CD-binding properties when oxidizing it to the ferrocenium cation. The ionic strength was shown to play an important role in controlling the aggregate growth. The attractive supramolecular and repulsive electrostatic interactions constitute a balance of forces in this system at low ionic strengths. At higher ionic strengths, the increased charge screening led to a loss of electrostatic repulsion and therefore to faster aggregate growth. A Job plot showed that a 1:1 stoichiometry of host and guest moieties gave the most efficient aggregate growth. Different stabilizers were used to find the optimal stopper to limit the growth. A weaker guest moiety was shown to be less efficient in stabilizing the SNPs. Also steric repulsion is important for achieving SNP stability. SNPs of controlled particle size and good stability (up to seven days) were prepared by fine-tuning the ratio of multivalent and monovalent interactions. Finally, reversibility of the SNPs was confirmed by oxidizing the Fc guest moieties in the core of the SNPs.
Journal Article
Complete asymmetric induction of supramolecular chirality in a hydrogen-bonded assembly
by
Timmerman, Peter
,
Huskens, Jurriaan
,
Reinhoudt, David N.
in
Chemical bonds
,
Chemistry
,
Exact sciences and technology
1999
Chirality at the supramolecular level involves the non-symmetric arrangement of molecular components in a non-covalent assembly
1
,
2
. Supramolecular chirality is abundant in biology, for example in the DNA double helix
3
, the triple helix of collagen
4
and the α-helical coiled coil of myosin
5
. These structures are stabilized by inter-strand hydrogen bonds, and their handedness is determined by the configuration of chiral centres in the nucleotide or peptide backbone. Synthetic hydrogen-bonded assemblies have been reported that display supramolecular chirality in solution
6
,
7
,
8
or in the solid state
9
,
10
,
11
,
12
. Complete asymmetric induction of supramolecular chirality—the formation of assemblies of a single handedness—has been widely studied in polymeric superstructures
13
,
14
. It has so far been achieved in inorganic metal-coordinated systems
15
,
16
,
17
, but not in organic hydrogen-bonded assemblies
18
,
19
,
20
. Here we describe the diastereoselective assembly of enantio-pure calix[4]arene dimelamines and 5,5-diethylbarbituric acid (DEB) into chiral hydrogen-bonded structures of one handedness. The system displays complete enantioselective self-resolution: the mixing of homomeric assemblies (composed of homochiral units) with opposite handedness does not lead to the formation of heteromeric assemblies. The non-covalent character of the chiral assemblies, the structural simplicity of the constituent building blocks and the ability to control the assembly process by means of peripheral chiral centres makes this system promising for the development of a wide range of homochiral supramolecular materials or enantioselective catalysts.
Journal Article
Molecular velcro in Flatland
2014
A layer of disordered proteins can selectively control the diffusion of particles along a surface.
Journal Article
A Supramolecular Sensing Platform for Phosphate Anions and an Anthrax Biomarker in a Microfluidic Device
by
Eker, Bilge
,
Yilmaz, Mahmut Deniz
,
Gardeniers, Johannes G. E.
in
Acids
,
Adenosine triphosphate
,
Adenosine Triphosphate - analysis
2011
A supramolecular platform based on self-assembled monolayers (SAMs) has been implemented in a microfluidic device. The system has been applied for the sensing of two different analyte types: biologically relevant phosphate anions and aromatic carboxylic acids, which are important for anthrax detection. A Eu(III)-EDTA complex was bound to β-cyclodextrin monolayers via orthogonal supramolecular host-guest interactions. The self-assembly of the Eu(III)-EDTA conjugate and naphthalene β-diketone as an antenna resulted in the formation of a highly luminescent lanthanide complex on the microchannel surface. Detection of different phosphate anions and aromatic carboxylic acids was demonstrated by monitoring the decrease in red emission following displacement of the antenna by the analyte. Among these analytes, adenosine triphosphate (ATP) and pyrophosphate, as well as dipicolinic acid (DPA) which is a biomarker for anthrax, showed a strong response. Parallel fabrication of five sensing SAMs in a single multichannel chip was performed, as a first demonstration of phosphate and carboxylic acid screening in a multiplexed format that allows a general detection platform for both analyte systems in a single test run with µM and nM detection sensitivity for ATP and DPA, respectively.
Journal Article