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result(s) for
"Jari Timonen"
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Comparison of Dimension Reduction Methods for Automated Essay Grading
by
Erkki Sutinen
,
Tuomo Kakkonen
,
Niko Myller
in
Academic grading
,
Automation
,
Computer Uses in Education
2008
Automatic Essay Assessor (AEA) is a system that utilizes information retrieval techniques such as Latent Semantic Analysis (LSA), Probabilistic Latent Semantic Analysis (PLSA), and Latent Dirichlet Allocation (LDA) for automatic essay grading. The system uses learning materials and relatively few teacher-graded essays for calibrating the scoring mechanism before grading. We performed a series of experiments using LSA, PLSA and LDA for document comparisons in AEA. In addition to comparing the methods on a theoretical level, we compared the applicability of LSA, PLSA, and LDA to essay grading with empirical data. The results show that the use of learning materials as training data for the grading model outperforms the k-NN-based grading methods. In addition to this, we found that using LSA yielded slightly more accurate grading than PLSA and LDA. We also found that the division of the learning materials in the training data is crucial. It is better to divide learning materials into sentences than paragraphs.
Journal Article
Quantifying temporal changes in Tornionjoki river ice breakup dates and spring temperatures in Lapland since 1802
by
Samuli HELAMA Jianmin JIANG Johanna KORHONEN Jari HOLOPAINEN Mauri TIMONEN
in
20th century
,
Air temperature
,
Anthropogenic factors
2013
Cryophenological records (i.e. observational series of freeze and breakup dates of ice) are of great importance when assessing the environmental variations in cold regions. Here we employed the extraordinarily long observational records of river ice breakup dates and air temperatures in northern Fennoscandia to examine their interrelations since 1802. Historical observations, along with modern data, comprise the informational setting for this analysis carried out using t-test. Temperature history of April-May season was used as cli- matic counterpart for the breakup timings. Both records (temperature and breakup) showed seven sub-periods during which their local means were distinctly different relative to preced- ing and subsequent sub-periods. The starting and ending years of these sub-periods oc- curred in temporal agreement. The main findings of this study are summarized as follows: (1) the synchrony between the temperature and river ice breakup records ruled out the possibility that the changes would have occurred due to quality of the historical series (i.e. inhomoge- neity problems often linked to historical time-series); (2) the studied records agreed to show lower spring temperatures and later river ice breakups during the 19th century, in comparison to the 20th century conditions, evidencing the prevalence of cooler spring temperatures in the study region, in agreement with the concept of the Little Ice Age (1570-1900) climate in North-West Europe; (3) the most recent sub-period demonstrate the highest spring tem- peratures with concomitantly earliest river ice breakups, showing the relative warmth of the current springtime climate in the study region in the context of the past two centuries; (4) the effects of anthropogenic changes in the river environment (e.g. construction and demolition of dams) during the 20th century should be considered for non-climatic variations in the breakup records; (5) this study emphasizes the importance of multi-centurial (i.e. historical) cryo- phenological information for highly interesting viewpoints of climate and environmental his- tory.
Journal Article
Species-specific synergistic effects of two plant growth—promoting microbes on green roof plant biomass and photosynthetic efficiency
by
Valkonen, Jari P. T.
,
Kasurinen, Jutta
,
Lehvävirta, Susanna
in
Antennaria dioica
,
Arbuscular mycorrhizas
,
Architectural design
2018
Rhizophagus irregularis, an arbuscular mycorrhizal fungus, and Bacillus amyloliquefaciens, a bacterium, are microorganisms that promote plant growth. They associate with plant roots and facilitate nutrient absorption by their hosts, increase resistance against pathogens and pests, and regulate plant growth through phytohormones. In this study, eight local plant species in Finland (Antennaria dioica, Campanula rotundifolia, Fragaria vesca, Geranium sanguineum, Lotus corniculatus, Thymus serpyllum, Trifolium repens, and Viola tricolor) were inoculated with R. irregularis and/or B. amyloliquefaciens in autoclaved substrates to evaluate the plant growth-promoting effects of different plant/microbe combinations under controlled conditions. The eight plant species were inoculated with R. irregularis, B. amyloliquefaciens, or both microbes or were not inoculated as a control. The impact of the microbes on the plants was evaluated by measuring dry shoot weight, colonization rate by the arbuscular mycorrhizal fungus, bacterial population density, and chlorophyll fluorescence using a plant phenotyping facility. Under dual inoculation conditions, B. amyloliquefaciens acted as a \"mycorrhiza helper bacterium\" to facilitate arbuscular mycorrhizal fungus colonization in all tested plants. In contrast, R. irregularis did not demonstrate reciprocal facilitation of the population density of B. amyloliquefaciens. Dual inoculation with B. amyloliquefaciens and R. irregularis resulted in the greatest increase in shoot weight and photosynthetic efficiency in T. repens and F. vesca.
Journal Article
Validation of the Zung self-rating depression scale (SDS) in older adults
2019
Objective: The main objective of this study was to investigate the psychometric properties of the Zung Self-Rating Depression Scale (SDS) and evaluate screening parameters capability of the SDS with the Beck Depression Inventory (BDI-21) among the elderly population.
Design: A population-based study
Setting: Community
Subjects: 520 adults, aged 72-73 years, living in the city of Oulu, Finland.
Main outcome measures: The screening parameters of the SDS questions and BDI-21 for detecting severity of depression. The Mini Neuropsychiatric Interview for diagnosing major depression.
Results: The optimal cut-off point for the SDS was 39. The sensitivity and specificity parameters for this cut-off point were 79.2% (95% CI 57.8-92.9) and 72.2% (95% CI 67.9-76.1), respectively. Positive and negative predictive values were 12.5% (95% CI 7.7-18.8) and 98.6% (95% CI 96.7-99.5), respectively. Moreover, there was no statistically significant difference in diagnostic accuracy indices of the cut-off points 39 and 40. In a receiver operating characteristic analysis, the area under the curve was 0.85 (95%CI 0.77-0.92) for the SDS total score and 0.89 (95% CI 0.83-0.96) for the BDI-21 (p = 0.137).
Conclusion: Using the traditional cut-off point, the SDS was convenient for identifying clinically meaningful depressive symptoms in an elderly Finnish population when compared with the BDI-21 which is one of the most commonly used depression screening scales. The sensitivity and specificity of these two screening tools are comparable.
Based on our study, the SDS is convenient for identifying clinically meaningful depressive symptoms among older adults at the community level.
Key points
The widely used Zung Self-Rating Depression Scale (SDS) has not previously been validated among elderly people at the community level.
The sensitivity and specificity of SDS (cut-off point 39) were 79.2% and 72.2%.
The positive and negative predictive values for SDS were 12.5% and 98.6%.
SDS is convenient for identifying major depression in an elderly population and regarding sensitivity and specificity comparable to BDI-21.
Journal Article
Inflammation, hippocampal volume, and cognition in schizophrenia: results from the Northern Finland Birth Cohort 1966
by
Viinamäki Heimo
,
Karhu, Toni
,
Herzig Karl-Heinz
in
Blood
,
Cognition & reasoning
,
Cognitive ability
2021
Increased blood interleukin-6 (IL-6) levels are a replicated abnormality in schizophrenia, and may be associated with smaller hippocampal volumes and greater cognitive impairment. These findings have not been investigated in a population-based birth cohort. The general population Northern Finland Birth Cohort 1966 was followed until age 43. Subjects with schizophrenia were identified through the national Finnish Care Register. Blood IL-6 levels were measured in n = 82 subjects with schizophrenia and n = 5373 controls at age 31. Additionally, 31 patients with schizophrenia and 63 healthy controls underwent brain structural MRI at age 34, and cognitive testing at ages 34 and 43. Patients with schizophrenia had significantly higher median (interquartile range) blood IL-6 levels than controls (5.31, 0.85–17.20, versus 2.42, 0.54–9.36, p = 0.02) after controlling for potential confounding factors. In both schizophrenia and controls, higher blood IL-6 levels were predictors of smaller hippocampal volumes, but not cognitive performance at age 34. We found evidence for increased IL-6 levels in patients with midlife schizophrenia from a population-based birth cohort, and replicated associations between IL-6 levels and hippocampal volumes. Our results complement and extend the previous findings, providing additional evidence that IL-6 may play a role in the pathophysiology of schizophrenia and associated brain alterations.
Journal Article
Protein Diffusion in Mammalian Cell Cytoplasm
by
Dross, Nicolas
,
Willman, Sami F.
,
Kühn, Thomas
in
Animals
,
Bacterial Proteins - metabolism
,
Binding sites
2011
We introduce a new method for mesoscopic modeling of protein diffusion in an entire cell. This method is based on the construction of a three-dimensional digital model cell from confocal microscopy data. The model cell is segmented into the cytoplasm, nucleus, plasma membrane, and nuclear envelope, in which environment protein motion is modeled by fully numerical mesoscopic methods. Finer cellular structures that cannot be resolved with the imaging technique, which significantly affect protein motion, are accounted for in this method by assigning an effective, position-dependent porosity to the cell. This porosity can also be determined by confocal microscopy using the equilibrium distribution of a non-binding fluorescent protein. Distinction can now be made within this method between diffusion in the liquid phase of the cell (cytosol/nucleosol) and the cytoplasm/nucleoplasm. Here we applied the method to analyze fluorescence recovery after photobleach (FRAP) experiments in which the diffusion coefficient of a freely-diffusing model protein was determined for two different cell lines, and to explain the clear difference typically observed between conventional FRAP results and those of fluorescence correlation spectroscopy (FCS). A large difference was found in the FRAP experiments between diffusion in the cytoplasm/nucleoplasm and in the cytosol/nucleosol, for all of which the diffusion coefficients were determined. The cytosol results were found to be in very good agreement with those by FCS.
Journal Article
Incidence and remission of aeroallergen sensitization in adults in Northern Finland: 15 years longitudinal study
2021
Studies on the longitudinal changes in sensitization to aeroallergens in adult populations are sparse. The aim was to evaluate changes in sensitization to aeroallergens [birch, timothy, cat and house dust mite (HDM)] in an unselected adult population aged from 31 to 46 years. Data were gathered from a cohort of adults (Northern Finland Birth Cohort 1966) who had been skin prick tested (SPT) with birch, timothy, cat and HDM allergens at the age of 31 years and at age 46 (n = 5484 and 5373 respectively). Data from both time points were available for 3409 participants, who made up the cohort of the longitudinal study. The overall prevalence of sensitization to any of the selected allergens was 30.3% (n = 1661) in 31-year-olds and 30.7% (n = 1649) in 46-year-olds. In general, men were more sensitized (
P
< 0.001) and also had more polysensitization (
P
< 0.001) compared to women. In longitudinal sub-population incidence of sensitization was 7.1%. Birch was the most prevalent new sensitizer, however, the difference was not statistically significant when compared to cat. We conclude that new sensitization, demonstrated by positive findings in SPT, can still occur in middle age and this should be taken into account when managing allergic manifestations in adults as sensitization can be considered the first step in developing clinical allergy.
Journal Article
Technology in the Home Care of Older People: Views from Finland and Ireland
2022
Optimistic expectations of technology can be identified in policy documents, academic centres and businesses that aim to create and promote a variety of technologies so that older people can age at home. This article draws on recent data from Ireland and Finland, two countries at different stages of technological development, to examine the role of technology in the home care for older adults. Research participants (service providers and care recipients) agreed that technology could play an important role by improving communications, enabling social contact, and connecting the ‘lone worker’ and ‘isolated patient’ to other stakeholders in home care services. However, participants also had serious concerns around technology. Care was conceptualised as relational and participants expressed apprehension about technology replacing face-to-face contact. Service providers expressed trepidation about the digital divide and technology driving further inequalities in the future. It is important that attempts to develop technology for older adults consider the concerns identified in this study, in order for home care technology to be successfully implemented, widely adopted and meaningfully used.
Journal Article
Neurofilament light as an outcome predictor after cardiac arrest: a post hoc analysis of the COMACARE trial
by
Cronberg, Tobias
,
Skrifvars, Markus B.
,
Hästbacka, Johanna
in
Anestesi och intensivvård
,
Anesthesiology
,
Anesthesiology and Intensive Care
2021
Purpose
Neurofilament light (NfL) is a biomarker reflecting neurodegeneration and acute neuronal injury, and an increase is found following hypoxic brain damage. We assessed the ability of plasma NfL to predict outcome in comatose patients after out-of-hospital cardiac arrest (OHCA). We also compared plasma NfL concentrations between patients treated with two different targets of arterial carbon dioxide tension (PaCO
2
), arterial oxygen tension (PaO
2
), and mean arterial pressure (MAP).
Methods
We measured NfL concentrations in plasma obtained at intensive care unit admission and at 24, 48, and 72 h after OHCA. We assessed neurological outcome at 6 months and defined a good outcome as Cerebral Performance Category (CPC) 1–2 and poor outcome as CPC 3–5.
Results
Six-month outcome was good in 73/112 (65%) patients. Forty-eight hours after OHCA, the median NfL concentration was 19 (interquartile range [IQR] 11–31) pg/ml in patients with good outcome and 2343 (587–5829) pg/ml in those with poor outcome,
p
< 0.001. NfL predicted poor outcome with an area under the receiver operating characteristic curve (AUROC) of 0.98 (95% confidence interval [CI] 0.97–1.00) at 24 h, 0.98 (0.97–1.00) at 48 h, and 0.98 (0.95–1.00) at 72 h. NfL concentrations were lower in the higher MAP (80–100 mmHg) group than in the lower MAP (65–75 mmHg) group at 48 h (median, 23 vs. 43 pg/ml,
p
= 0.04). PaCO
2
and PaO
2
targets did not associate with NfL levels.
Conclusions
NfL demonstrated excellent prognostic accuracy after OHCA. Higher MAP was associated with lower NfL concentrations.
Journal Article
Multimorbidity and achievement of treatment goals among patients with type 2 diabetes: a primary care, real-world study
by
Timonen, Markku
,
Heikkala, Eveliina
,
Mikkola, Ilona
in
Antihypertensives
,
Body mass index
,
Cardiovascular disease
2021
Background
Type 2 diabetes (T2D), with its prevalence and disability-causing nature, is a challenge for primary health care. Most patients with T2D are multimorbid, i.e. have one or more long-term diseases in addition to T2D. Multimorbidity may play a role in the achievement of T2D treatment targets, but is still not fully understood. The aims of the present cross-sectional, register-based study were to evaluate the prevalence and the most common patterns of multimorbidity among patients with T2D; and to study the potential associations between multimorbidity and treatment goal achievement, including measurements of glycosylated haemoglobin A1c (HbA1c), low-density lipoprotein (LDL) and systolic blood pressure (sBP).
Methods
The study population consisted of 4545 primary care patients who received a T2D diagnosis between January 2011 and July 2019 in Rovaniemi Health Centre, Finland. Data on seven long-term concordant (T2D-related) diseases, eight long-term discordant (non-T2D-related) diseases, potential confounders (age, sex, body mass index, prescribed medication), and the outcomes studied were collected from patients’ records. Logistic regression models with odds ratios (ORs) and 95 % confidence intervals (CIs) were assessed to determine the associations between multimorbidity and the achievement of treatment targets.
Results
Altogether, 93 % of the patients had one or more diseases in addition to T2D, i.e. were considered multimorbid. Furthermore, 21 % had only concordant disease(s) (Concordant subgroup), 8 % had only discordant disease(s) (Discordant subgroup) and 64 % had both (Concordant and discordant subgroup). As either single diseases or in combination with others, hypertension, musculoskeletal (MS) disease and hyperlipidaemia were the most prevalent multimorbidity patterns. Being multimorbid in general (OR 1.32, CI 1.01–1.70) and belonging to the Concordant (OR 1.45, CI 1.08–1.95) and Concordant and discordant (OR 1.31, CI 1.00–1.72) subgroups was associated with achievement of the HbA1c treatment target. Belonging to the Concordant and discordant subgroup was related to meeting the LDL treatment target (OR 1.31, CI 1.00–1.72).
Conclusions
Multimorbidity, including cardiovascular risk and the musculoskeletal disease burden, was extremely prevalent among the T2D patients who consulted primary health care. Primary care clinicians should survey the possible co-existence of long-term diseases among T2D patients to help maintain adequate treatment of T2D.
Journal Article