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7 result(s) for "Jarrett, Cody M"
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The Stress-Chip: A microfluidic platform for stress analysis in Caenorhabditis elegans
An organism's ability to mount a physiological response to external stressors is fundamental to its interaction with the environment. Experimental exploration of these interactions benefits greatly from the ability to maintain tight control of the environment, even under conditions in which it would be normal for the subject to flee the stressor. Here we present a nematode research platform that pairs automated image acquisition and analysis with a custom microfluidic device. This platform enables tight environmental control in low-density, single-worm arenas, which preclude animal escape while still allowing a broad range of behavioral activities. The platform is easily scalable, with two 50 arena arrays per chip and an imaging capacity of 600 animals per scanning device. Validating the device using dietary, osmotic, and oxidative stress indicates that it should be of broad use as a research platform, including eventual adaptation for additional stressors, anthelmintic-drug screening, and toxicology studies.
The Egg-Counter: A novel microfluidic platform for characterization of Caenorhabditis elegans egg-laying
Reproduction is a fundamental process that shapes the demography of every living organism yet is often difficult to assess with high precision in animals that produce large numbers of offspring. Here, we present a novel microfluidic research platform for studying Caenorhabditis elegans' egg-laying. The platform provides higher throughput than traditional solid-media assays while providing a very high degree of temporal resolution. Additionally, the environmental control enabled by microfluidic animal husbandry allows for experimental perturbations difficult to achieve with solid-media assays. We demonstrate the platform's utility by characterizing C. elegans egg-laying behavior at two commonly used temperatures, 15 and 20°C. As expected, we observed a delayed onset of egg-laying at 15°C degrees, consistent with published temperature effects on development rate. Additionally, as seen in solid media studies, egg laying output was higher under the canonical 20°C conditions. While we validated the Egg-Counter with a study of temperature effects in wild-type animals, the platform is highly adaptable to any nematode egg-laying research where throughput or environmental control needs to be maximized without sacrificing temporal resolution.Reproduction is a fundamental process that shapes the demography of every living organism yet is often difficult to assess with high precision in animals that produce large numbers of offspring. Here, we present a novel microfluidic research platform for studying Caenorhabditis elegans' egg-laying. The platform provides higher throughput than traditional solid-media assays while providing a very high degree of temporal resolution. Additionally, the environmental control enabled by microfluidic animal husbandry allows for experimental perturbations difficult to achieve with solid-media assays. We demonstrate the platform's utility by characterizing C. elegans egg-laying behavior at two commonly used temperatures, 15 and 20°C. As expected, we observed a delayed onset of egg-laying at 15°C degrees, consistent with published temperature effects on development rate. Additionally, as seen in solid media studies, egg laying output was higher under the canonical 20°C conditions. While we validated the Egg-Counter with a study of temperature effects in wild-type animals, the platform is highly adaptable to any nematode egg-laying research where throughput or environmental control needs to be maximized without sacrificing temporal resolution.
The Stress-Chip: A microfluidic platform for stress analysis in Caenorhabditis elegans
An organism's ability to mount a physiological response to external stressors is fundamental to its interaction with the environment. Experimental exploration of these interactions benefits greatly from the ability to maintain tight control of the environment, even under conditions in which it would be normal for the subject to flee the stressor. Here we present a nematode research platform that pairs automated image acquisition and analysis with a custom microfluidic device. This platform enables tight environmental control in low-density, single-worm arenas, which preclude animal escape while still allowing a broad range of behavioral activities. The platform is easily scalable, with two 50 arena arrays per chip and an imaging capacity of 600 animals per scanning device. Validating the device using dietary, osmotic, and oxidative stress indicates that it should be of broad use as a research platform, including eventual adaptation for additional stressors, anthelmintic-drug screening, and toxicology studies.
Automated Lifespan Determination Across Caenorhabditis Strains and Species Reveals Assay-Specific Effects of Chemical Interventions
The goal of the Caenorhabditis Intervention Testing Program is to identify robust and reproducible pro-longevity interventions that are efficacious across genetically diverse cohorts in the Caenorhabditis genus. The project design features multiple experimental replicates collected by three different laboratories. Our initial effort employed fully manual survival assays. With an interest in increasing throughput, we explored automation with flatbed scanner-based Automated Lifespan Machines (ALMs). We used ALMs to measure survivorship of 22 Caenorhabditis strains spanning three species. Additionally, we tested five chemicals that we previously found extended lifespan in manual assays. Overall, we found similar sources of variation among trials for the ALM and our previous manual assays, verifying reproducibility of outcome. Survival assessment was generally consistent between the manual and the ALM assays, although we did observe radically contrasting results for certain compound interventions. We found that particular lifespan outcome differences could be attributed to protocol elements such as enhanced light exposure of specific compounds in the ALM, underscoring that differences in technical details can influence outcomes and therefore interpretation. Overall, we demonstrate that the ALMs effectively reproduce a large, conventionally scored dataset from a diverse test set, independently validating ALMs as a robust and reproducible approach towards aging-intervention screening. Footnotes * https://doi.org/10.6084/m9.figshare.c.4580546.v1
Physical and optical properties of the International Simple Glass
Radioactive waste immobilization is a means to limit the release of radionuclides from various waste streams into the environment over a timescale of hundreds to many thousands of years. Incorporation of radionuclide-containing wastes into borosilicate glass during vitrification is one potential route to accomplish such immobilization. To facilitate comparisons and assessments of reproducibility across experiments and laboratories, a six-component borosilicate glass (Si, B, Na, Al, Ca, Zr) known as the International Simple Glass (ISG) was developed by international consensus as a compromise between simplicity and similarity to waste glasses. Focusing on a single glass composition with a multi-pronged approach utilizing state-of-the-art, multi-scale experimental and theoretical tools provides a common database that can be used to assess relative importance of mechanisms and models. Here we present physical property data (both published and previously unpublished) on a single batch of ISG, which was cast into individual ingots that were distributed to the collaborators. Properties from the atomic scale to the macroscale, including composition and elemental impurities, phase purity, density, thermal properties, mechanical properties, optical and vibrational properties, and the results of molecular dynamics simulations are presented. In addition, information on the surface composition and morphology after polishing is included. Although the existing literature on the alteration of ISG is not extensively reviewed here, the results of well-controlled static alteration experiments are presented here as a point of reference for other performance investigations. Nuclear Glass: A problem shared Ingots of a reference nuclear-waste glass created in a single batch were distributed among collaborators, tested, and the results compared. Borosilicate glasses are used to immobilize and store radioactive waste, with the aim of containing it for long periods of time. However, corrosion is an inevitable issue and data are needed to understand the glasses’ long-term behavior. To simplify and standardize the study of nuclear-waste glasses, a six-component glass, known as International Simple Glass (ISG), was developed, representing a compromise between simplicity and similarity to actual waste glasses. Now, an international collaboration of scientists from the UK and USA led by Joseph V. Ryan at Pacific Northwest National Laboratory has studied a single batch of ISG, distributing ingots among the collaborators and individually measuring their properties—with very good agreement observed between the laboratories.
Physical and optical properties of the International Simple Glass
Radioactive waste immobilization is a means to limit the release of radionuclides from various waste streams into the environment over a timescale of hundreds to many thousands of years. Vitrification via incorporation of radionuclide-containing wastes into borosilicate glass is one potential route to accomplish such immobilization. Predicting the rate of radionuclide release from borosilicate glass over long periods of environmental exposure is a difficult endeavor, however, due to a lack of scientific consensus on the particular mechanism(s) that control glass corrosion at any given time. To facilitate experimental correlation and reproducibility across experiments and laboratories, a six-component borosilicate glass (Si, B, Na, Al, Ca, Zr) known as the International Simple Glass (ISG) was developed by international consensus as a compromise between simplicity and similarity to waste glasses. Focusing on a single glass composition allows a multi-pronged approach utilizing state-of-the-art, multi-scale experimental and theoretical tools available to the collaborators to realize fundamental insights into the corrosion behavior of the glass. To further this objective, here we review physical property data (both published and previously unpublished) on a single batch of ISG, which was subsequently divided between the collaborators. Properties from the atomic scale to the macroscale, including composition and impurities, phase purity, density, thermal properties, mechanical properties, optical and vibrational properties, and the results of molecular dynamics simulations are presented. In addition, information on the surface composition and morphology after polishing is included. Although the existing literature on the alteration of ISG is not reviewed here, the results of well-controlled static alteration experiments (ASTM C1285) are presented as a point of reference for other performance investigations.
Auroral meridian scanning photometer calibration using Jupiter
Observations of astronomical sources provide information that can significantly enhance the utility of auroral data for scientific studies. This report presents results obtained by using Jupiter for field cross calibration of four multispectral auroral meridian scanning photometers during the 2011–2015 Northern Hemisphere winters. Seasonal average optical field-of-view and local orientation estimates are obtained with uncertainties of 0.01 and 0.1°, respectively. Estimates of absolute sensitivity are repeatable to roughly 5 % from one month to the next, while the relative response between different wavelength channels is stable to better than 1 %. Astronomical field calibrations and darkroom calibration differences are on the order of 10 %. Atmospheric variability is the primary source of uncertainty; this may be reduced with complementary data from co-located instruments.