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result(s) for
"Jennewein, Jyoti"
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Comparing NISAR (Using Sentinel-1), USDA/NASS CDL, and Ground Truth Crop/Non-Crop Areas in an Urban Agricultural Region
by
Cosh, Michael H.
,
Hively, W. Dean
,
Lamb, Brian T.
in
Accuracy
,
Agricultural industry
,
Agricultural land
2023
A general limitation in assessing the accuracy of land cover mapping is the availability of ground truth data. At sites where ground truth is not available, potentially inaccurate proxy datasets are used for sub-field-scale resolution investigations at large spatial scales, i.e., in the Contiguous United States. The USDA/NASS Cropland Data Layer (CDL) is a popular agricultural land cover dataset due to its high accuracy (>80%), resolution (30 m), and inclusions of many land cover and crop types. However, because the CDL is derived from satellite imagery and has resulting uncertainties, comparisons to available in situ data are necessary for verifying classification performance. This study compares the cropland mapping accuracies (crop/non-crop) of an optical approach (CDL) and the radar-based crop area (CA) approach used for the upcoming NASA-ISRO Synthetic Aperture Radar (NISAR) L- and S-band mission but using Sentinel-1 C-band data. CDL and CA performance are compared to ground truth data that includes 54 agricultural production and research fields located at USDA’s Beltsville Agricultural Research Center (BARC) in Maryland, USA. We also evaluate non-crop mapping accuracy using twenty-six built-up and thirteen forest sites at BARC. The results show that the CDL and CA have a good pixel-wise agreement with one another (87%). However, the CA is notably more accurate compared to ground truth data than the CDL. The 2017–2021 mean accuracies for the CDL and CA, respectively, are 77% and 96% for crop, 100% and 94% for built-up, and 100% and 100% for forest, yielding an overall accuracy of 86% for the CDL and 96% for CA. This difference mainly stems from the CDL under-detecting crop cover at BARC, especially in 2017 and 2018. We also note that annual accuracy levels varied less for the CA (91–98%) than for the CDL (79–93%). This study demonstrates that a computationally inexpensive radar-based cropland mapping approach can also give accurate results over complex landscapes with accuracies similar to or better than optical approaches.
Journal Article
Integration of Satellite-Based Optical and Synthetic Aperture Radar Imagery to Estimate Winter Cover Crop Performance in Cereal Grasses
by
Goldsmith, Avi
,
Hively, W. Dean
,
Lamb, Brian T.
in
Agricultural practices
,
Biomass
,
Climate change
2022
The magnitude of ecosystem services provided by winter cover crops is linked to their performance (i.e., biomass and associated nitrogen content, forage quality, and fractional ground cover), although few studies quantify these characteristics across the landscape. Remote sensing can produce landscape-level assessments of cover crop performance. However, commonly employed optical vegetation indices (VI) saturate, limiting their ability to measure high-biomass cover crops. Contemporary VIs that employ red-edge bands have been shown to be more robust to saturation issues. Additionally, synthetic aperture radar (SAR) data have been effective at estimating crop biophysical characteristics, although this has not been demonstrated on winter cover crops. We assessed the integration of optical (Sentinel-2) and SAR (Sentinel-1) imagery to estimate winter cover crops biomass across 27 fields over three winter–spring seasons (2018–2021) in Maryland. We used log-linear models to predict cover crop biomass as a function of 27 VIs and eight SAR metrics. Our results suggest that the integration of the normalized difference red-edge vegetation index (NDVI_RE1; employing Sentinel-2 bands 5 and 8A), combined with SAR interferometric (InSAR) coherence, best estimated the biomass of cereal grass cover crops. However, these results were season- and species-specific (R2 = 0.74, 0.81, and 0.34; RMSE = 1227, 793, and 776 kg ha−1, for wheat (Triticum aestivum L.), triticale (Triticale hexaploide L.), and cereal rye (Secale cereale), respectively, in spring (March–May)). Compared to the optical-only model, InSAR coherence improved biomass estimations by 4% in wheat, 5% in triticale, and by 11% in cereal rye. Both optical-only and optical-SAR biomass prediction models exhibited saturation occurring at ~1900 kg ha−1; thus, more work is needed to enable accurate biomass estimations past the point of saturation. To address this continued concern, future work could consider the use of weather and climate variables, machine learning models, the integration of proximal sensing and satellite observations, and/or the integration of process-based crop-soil simulation models and remote sensing observations.
Journal Article
Intercomparison of Same-Day Remote Sensing Data for Measuring Winter Cover Crop Biophysical Traits
by
Prabhakara, Kusuma
,
Jennewein, Jyoti
,
McCarty, Greg W.
in
Agricultural research
,
Air pollution
,
Atmosphere
2024
Winter cover crops are planted during the fall to reduce nitrogen losses and soil erosion and improve soil health. Accurate estimations of winter cover crop performance and biophysical traits including biomass and fractional vegetative groundcover support accurate assessment of environmental benefits. We examined the comparability of measurements between ground-based and spaceborne sensors as well as between processing levels (e.g., surface vs. top-of-atmosphere reflectance) in estimating cover crop biophysical traits. This research examined the relationships between SPOT 5, Landsat 7, and WorldView-2 same-day paired satellite imagery and handheld multispectral proximal sensors on two days during the 2012–2013 winter cover crop season. We compared two processing levels from three satellites with spatially aggregated proximal data for red and green spectral bands as well as the normalized difference vegetation index (NDVI). We then compared NDVI estimated fractional green cover to in-situ photographs, and we derived cover crop biomass estimates from NDVI using existing calibration equations. We used slope and intercept contrasts to test whether estimates of biomass and fractional green cover differed statistically between sensors and processing levels. Compared to top-of-atmosphere imagery, surface reflectance imagery were more closely correlated with proximal sensors, with intercepts closer to zero, regression slopes nearer to the 1:1 line, and less variance between measured values. Additionally, surface reflectance NDVI derived from satellites showed strong agreement with passive handheld multispectral proximal sensor-sensor estimated fractional green cover and biomass (adj. R2 = 0.96 and 0.95; RMSE = 4.76% and 259 kg ha−1, respectively). Although active handheld multispectral proximal sensor-sensor derived fractional green cover and biomass estimates showed high accuracies (R2 = 0.96 and 0.96, respectively), they also demonstrated large intercept offsets (−25.5 and 4.51, respectively). Our results suggest that many passive multispectral remote sensing platforms may be used interchangeably to assess cover crop biophysical traits whereas SPOT 5 required an adjustment in NDVI intercept. Active sensors may require separate calibrations or intercept correction prior to combination with passive sensor data. Although surface reflectance products were highly correlated with proximal sensors, the standardized cloud mask failed to completely capture cloud shadows in Landsat 7, which dampened the signal of NIR and red bands in shadowed pixels.
Journal Article
Combining Remote Sensing and Meteorological Data for Improved Rice Plant Potassium Content Estimation
by
Zheng, Hengbiao
,
Tian, Yongchao
,
Lu, Jingshan
in
Accuracy
,
Agricultural production
,
Algorithms
2021
Potassium (K) plays a significant role in the formation of crop quality and yield. Accurate estimation of plant potassium content using remote sensing (RS) techniques is therefore of great interest to better manage crop K nutrition. To improve RS of crop K, meteorological information might prove useful, as it is well established that weather conditions affect crop K uptake. We aimed to determine whether including meteorological data into RS-based models can improve K estimation accuracy in rice (Oryza sativa L.). We conducted field experiments throughout three growing seasons (2017–2019). During each year, different treatments (i.e., nitrogen, potassium levels and plant varieties) were applied and spectra were taken at different growth stages throughout the growing season. Firstly, we conducted a correlation analysis between rice plant potassium content and transformed spectra (reflectance spectra (R), first derivative spectra (FD) and reciprocal logarithm-transformed spectra (log [1/R])) to select correlation bands. Then, we performed the genetic algorithms partial least-squares and linear mixed effects model to select important bands (IBs) and important meteorological factors (IFs) from correlation bands and meteorological data (daily average temperature, humidity, etc.), respectively. Finally, we used the spectral index and machine learning methods (partial least-squares regression (PLSR) and random forest (RF)) to construct rice plant potassium content estimation models based on transformed spectra, transformed spectra + IFs and IBs, and IBs + IFs, respectively. Results showed that normalized difference spectral index (NDSI (R1210, R1105)) had a moderate estimation accuracy for rice plant potassium content (R2 = 0.51; RMSE = 0.49%) and PLSR (FD-IBs) (R2 = 0.69; RMSE = 0.37%) and RF (FD-IBs) (R2 = 0.71; RMSE = 0.40%) models based on FD could improve the prediction accuracy. Among the meteorological factors, daily average temperature contributed the most to estimating rice plant potassium content, followed by daily average humidity. The estimation accuracy of the optimal rice plant potassium content models was improved by adding meteorological factors into the three RS models, with model R2 increasing to 0.65, 0.74, and 0.76, and RMSEs decreasing to 0.42%, 0.35%, and 0.37%, respectively, suggesting that including meteorological data can improve our ability to remotely sense plant potassium content in rice.
Journal Article
Spaceborne imaging spectroscopy enables carbon trait estimation in cover crop and cash crop residues
by
Jennewein, Jyoti S
,
Thieme, Alison
,
Lamb, Brian T
in
Agricultural ecosystems
,
Agricultural practices
,
Carbohydrates
2024
PurposeCover crops and reduced tillage are two key climate smart agricultural practices that can provide agroecosystem services including improved soil health, increased soil carbon sequestration, and reduced fertilizer needs. Crop residue carbon traits (i.e., lignin, holocellulose, non-structural carbohydrates) and nitrogen concentrations largely mediate decomposition rates and amount of plant-available nitrogen accessible to cash crops and determine soil carbon residence time. Non-destructive approaches to quantify these important traits are possible using spectroscopy.MethodsThe objective of this study was to evaluate the efficacy of spectroscopy instruments to quantify crop residue biochemical traits in cover crop agriculture systems using partial least squares regression models and a combination of (1) the band equivalent reflectance (BER) of the PRecursore IperSpettrale della Missione Applicativa (PRISMA) imaging spectroscopy sensor derived from laboratory collected Analytical Spectral Devices (ASD) spectra (n = 296) of 11 cover crop species and three cash crop species, and (2) spaceborne PRISMA imagery that coincided with destructive crop residue collections in the spring of 2022 (n = 65). Spectral range was constrained to 1200 to 2400 nm to reduce the likelihood of confounding relationships in wavelengths sensitive to plant pigments or those related to canopy structure for both analytical approaches.ResultsModels using laboratory BER of PRISMA all demonstrated high accuracies and low errors for estimation of nitrogen and carbon traits (adj. R2 = 0.86 − 0.98; RMSE = 0.24 − 4.25%) and results indicate that a single model may be used for a given trait across all species. Models using spaceborne imaging spectroscopy demonstrated that crop residue carbon traits can be successfully estimated using PRISMA imagery (adj. R2 = 0.65 − 0.75; RMSE = 2.71 − 4.16%). We found moderate relationships between nitrogen concentration and PRISMA imagery (adj. R2 = 0.52; RMSE = 0.25%), which is partly related to the range of nitrogen in these senesced crop residues (0.38–1.85%). PRISMA imagery models were also influenced by atmospheric absorption, variability in surface moisture content, and some presence of green vegetation.ConclusionAs spaceborne imaging spectroscopy data become more widely available from upcoming missions, crop residue trait estimates could be regularly generated and integrated into decision support tools to calculate decomposition rates and associated nitrogen credits to inform precision field management, as well as to enable measurement, monitoring, reporting, and verification of net carbon benefits from climate smart agricultural practice adoption in an emerging carbon marketplace.
Journal Article
Toward Mapping Dietary Fibers in Northern Ecosystems Using Hyperspectral and Multispectral Data
by
Vierling, Lee A.
,
Jennewein, Jyoti S.
,
Pinto, Jeremiah R.
in
Acids
,
Airborne instruments
,
Arctic
2020
Shrub proliferation across the Arctic from climate warming is expanding herbivore habitat but may also alter forage quality. Dietary fibers—an important component of forage quality—influence shrub palatability, and changes in dietary fiber concentrations may have broad ecological implications. While airborne hyperspectral instruments may effectively estimate dietary fibers, such data captures a limited portion of landscapes. Satellite data such as the multispectral WorldView-3 (WV-3) instrument may enable dietary fiber estimation to be extrapolated across larger areas. We assessed how variation in dietary fibers of Salix alaxensis (Andersson), a palatable northern shrub, could be estimated using hyperspectral and multispectral WV-3 spectral vegetation indices (SVIs) in a greenhouse setting, and whether including structural information (i.e., leaf area) would improve predictions. We collected canopy-level hyperspectral reflectance readings, which we convolved to the band equivalent reflectance of WV-3. We calculated every possible SVI combination using hyperspectral and convolved WV-3 bands. We identified the best performing SVIs for both sensors using the coefficient of determination (adjusted R2) and the root mean square error (RMSE) using simple linear regression. Next, we assessed the importance of plant structure by adding shade leaf area, sun leaf area, and total leaf area to models individually. We evaluated model fits using Akaike’s information criterion for small sample sizes and conducted leave-one-out cross validation. We compared cross validation slopes and predictive power (Spearman rank coefficients ρ) between models. Hyperspectral SVIs (R2 = 0.48–0.68; RMSE = 0.04–0.91%) outperformed WV-3 SVIs (R2 = 0.13–0.35; RMSE = 0.05–1.18%) for estimating dietary fibers, suggesting hyperspectral remote sensing is best suited for estimating dietary fibers in a palatable northern shrub. Three dietary fibers showed improved predictive power when leaf area metrics were included (cross validation ρ = +2–8%), suggesting plant structure and the light environment may augment our ability to estimate some dietary fibers in northern landscapes. Monitoring dietary fibers in northern ecosystems may benefit from upcoming hyperspectral satellites such as the environmental mapping and analysis program (EnMAP).
Journal Article
Examining ‘willingness to participate’ in community-based water resource management in a transboundary conservation area in Central America
2016
Operationalizing integrated water resource management (IWRM) often involves decentralization of water management via community-based management (CBM). While attention has been given to the components leading to successful CBM, less is known about what factors motivate people's willingness to participate (WTP) in such programs. This study analyzed factors that influence household WTP in CBM in a transboundary watershed located where El Salvador, Guatemala, and Honduras converge – the Trifinio Region. Several variables were hypothesized to influence WTP: sense of community (SOC), dependence on water resources, level of concern for water resources, and socio-economic characteristics. In 2014, quantitative and qualitative data were collected from 62 households in five communities. Most respondents reported high levels of WTP in future CBM initiatives, and multivariate regression analysis revealed that SOC was the most important predictor of WTP, with wealth and perceptions of watershed management also statistically significant. Qualitative analyses revealed water availability was more concerning than water quality, and perceptions of inequitable access to water is an important constraint to developing CBM strategies. Taken together, these results suggest that enhancing SOC and relationships between local and regional levels of governance prior to establishing community-based projects would facilitate more success in implementing IWRM.
Journal Article
Behavioral modifications by a large-northern herbivore to mitigate warming conditions
by
Mahoney, Peter
,
Hebblewhite, Mark
,
Vierling, Lee A.
in
Alaska
,
Alces alces
,
Ambient temperature
2020
Background
Temperatures in arctic-boreal regions are increasing rapidly and pose significant challenges to moose (
Alces alces
), a heat-sensitive large-bodied mammal. Moose act as ecosystem engineers, by regulating forest carbon and structure, below ground nitrogen cycling processes, and predator-prey dynamics. Previous studies showed that during hotter periods, moose displayed stronger selection for wetland habitats, taller and denser forest canopies, and minimized exposure to solar radiation. However, previous studies regarding moose behavioral thermoregulation occurred in Europe or southern moose range in North America. Understanding whether ambient temperature elicits a behavioral response in high-northern latitude moose populations in North America may be increasingly important as these arctic-boreal systems have been warming at a rate two to three times the global mean.
Methods
We assessed how Alaska moose habitat selection changed as a function of ambient temperature using a step-selection function approach to identify habitat features important for behavioral thermoregulation in summer (June–August). We used Global Positioning System telemetry locations from four populations of Alaska moose (
n
= 169) from 2008 to 2016. We assessed model fit using the quasi-likelihood under independence criterion and conduction a leave-one-out cross validation.
Results
Both male and female moose in all populations increasingly, and nonlinearly, selected for denser canopy cover as ambient temperature increased during summer, where initial increases in the conditional probability of selection were initially sharper then leveled out as canopy density increased above ~ 50%. However, the magnitude of selection response varied by population and sex. In two of the three populations containing both sexes, females demonstrated a stronger selection response for denser canopy at higher temperatures than males. We also observed a stronger selection response in the most southerly and northerly populations compared to populations in the west and central Alaska.
Conclusions
The impacts of climate change in arctic-boreal regions increase landscape heterogeneity through processes such as increased wildfire intensity and annual area burned, which may significantly alter the thermal environment available to an animal. Understanding habitat selection related to behavioral thermoregulation is a first step toward identifying areas capable of providing thermal relief for moose and other species impacted by climate change in arctic-boreal regions.
Journal Article
Remote sensing evaluation of winter cover crop springtime performance and the impact of delayed termination
2023
In 2019, the Maryland Department of Agriculture's Winter Cover Crop Program introduced a delayed termination incentive (after May 1) to promote springtime biomass accumulation. We used satellite imagery calibrated with springtime in situ measurements collected from 2006–2021 (n = 722) to derive biomass estimates for Maryland fields planted to cereal cover crop species (286,200 ha total over two seasons). Cover crop C content remained steady throughout the cover crop growing season (42.6% of biomass), whereas N concentration had an inverse relationship with biomass and ranged from 1.7 to 2.9%. Throughout Maryland, delayed termination fields (n = 19,120; average termination of May 18) were, on average, estimated to accumulate an additional 789 kg of biomass, 15 kg of N, and 336 kg of C per hectare when compared to fields associated with standard termination dates (n = 28,811; average termination of April 16). Over two cover crop seasons (2019–2021), the delayed termination incentive yielded an extra 75,660,000 kg biomass, 1,526,000 kg N, and 32,230,000 kg C across 96,040 hectares. Regularly terminated field incentives cost an average of US $0.10 per kg of biomass and $ 4.09 per kg of N, with variability associated with agronomic management (species, planting method). Delayed termination fields cost of$0.08 per kg of biomass and $ 3.51 per kg of N. Late‐planted cover crops that were terminated early had minimal environmental benefit, and wheat, which comprised 68% of cover crop area, performed poorly compared with other cereal species. Our findings demonstrate that substantial additional springtime biomass, C, and N accumulation were achieved through the delayed termination incentive. Core Ideas Remote sensing, combined with destructive sampling, can enable the estimation of winter cover crop biomass at scale. Winter cover crop fields that delay termination showed higher biomass, N, and C accumulation. Fields that received an incentive to delay termination had, on average, lower cost per unit performance. Performance varied by species, planting date, planting method, and termination date.
Journal Article
Using Remote Sensing Data to Model Habitat Selection and Forage Quality for Herbivores in High Northern Latitudes in a Changing Climate
Landscapes located in high northern latitudes (≥ 60°N) are changing at a rate two to three times the global mean. Research is needed to assess the current state of northern latitude regions to best identify the impacts of climate change, which can inform the advancement of policies and management strategies. In response to warming induced landscape changes, management agencies are identifying practical “adaptive strategies” that may mitigate the negative effects of climate change. One such strategy in wildlife management is to evaluate and enhance monitoring programs, and to consider incorporating new tools to augment monitoring efforts. Geospatial tools are one set of technologies that may enhance evaluation and monitoring for wildlife management. These tools enable spatial data to be collected, analyzed, and visualized in ways that assist in planning and management activities. Two common geospatial tools used in wildlife management are (1) mobile Global Positioning Systems (GPS) that can be housed in collars worn by a variety of species, and (2) remote sensing, which collects noncontact information regarding the physical and biological characteristics from a given target using reflected or emitted radiation. The second chapter of this dissertation incorporates remotely sensed products in conjunction with GPS-telemetry from four Alaska moose populations to assess how habitat selection changes in response to increased temperatures. Both male and female moose in all populations increasingly, and nonlinearly, selected for denser canopy cover as ambient temperature increased during summer, where initial increases in the conditional probability of selection were initially sharper then leveled out as canopy density increased above ~50%. However, the magnitude of selection response varied by population and sex. In two of the three populations containing both sexes, females demonstrated a stronger selection response for denser canopy at higher temperatures than males. We also observed a stronger selection response in the most southerly and northerly populations compared to populations in the west and central Alaska. The third and fourth chapters of this dissertation explore the development of remote sensing approaches to characterize, monitor, and map forage quality in high latitude regions of Alaska. I used hyperspectral data in conjunction with plant structural metrics derived from digital photographs and unmanned aerial vehicle structure from motion photogrammetry. My results suggested that spectral vegetation indices calculated from hyperspectral remote sensing are an appropriate method for estimating important forage quality metrics such as dietary fibers (Chapter 3) – hemicellulose, cellulose, neutral detergent fiber, acid detergent fiber, acid detergent fiber, and silica – as well as integrated forage metrics (Chapter 4) – digestible protein and dry matter digestibility. My results also indicated that incorporating shrub structure is an important, and often unconsidered, aspect of remotely sensed forage quality metrics.
Dissertation