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result(s) for
"Jiao, Jun"
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YOLOv5-KCB: A New Method for Individual Pig Detection Using Optimized K-Means, CA Attention Mechanism and a Bi-Directional Feature Pyramid Network
2023
Individual identification of pigs is a critical component of intelligent pig farming. Traditional pig ear-tagging requires significant human resources and suffers from issues such as difficulty in recognition and low accuracy. This paper proposes the YOLOv5-KCB algorithm for non-invasive identification of individual pigs. Specifically, the algorithm utilizes two datasets—pig faces and pig necks—which are divided into nine categories. Following data augmentation, the total sample size was augmented to 19,680. The distance metric used for K-means clustering is changed from the original algorithm to 1-IOU, which improves the adaptability of the model’s target anchor boxes. Furthermore, the algorithm introduces SE, CBAM, and CA attention mechanisms, with the CA attention mechanism being selected for its superior performance in feature extraction. Finally, CARAFE, ASFF, and BiFPN are used for feature fusion, with BiFPN selected for its superior performance in improving the detection ability of the algorithm. The experimental results indicate that the YOLOv5-KCB algorithm achieved the highest accuracy rates in pig individual recognition, surpassing all other improved algorithms in average accuracy rate (IOU = 0.5). The accuracy rate of pig head and neck recognition was 98.4%, while the accuracy rate for pig face recognition was 95.1%, representing an improvement of 4.8% and 13.8% over the original YOLOv5 algorithm. Notably, the average accuracy rate of identifying pig head and neck was consistently higher than pig face recognition across all algorithms, with YOLOv5-KCB demonstrating an impressive 2.9% improvement. These results emphasize the potential for utilizing the YOLOv5-KCB algorithm for precise individual pig identification, facilitating subsequent intelligent management practices.
Journal Article
State observer-based adaptive neural dynamic surface control for a class of uncertain nonlinear systems with input saturation using disturbance observer
by
Zhang, Jiao-Jun
in
Adaptive control
,
Artificial Intelligence
,
Computational Biology/Bioinformatics
2019
This paper focuses on the problem of tracking control aiming at a class of uncertain nonlinear systems in the presence of input saturation, unknown external disturbances and unmeasured states on the basis of adaptive neural dynamic surface control (DSC) scheme in combination with state and disturbance observers. The unknown nonlinear system functions are approximated by Radial Basis Function Neural Networks, the unmeasured states are estimated by a developed state observer and the unknown compounded disturbances are estimated by nonlinear disturbance observers. In addition, by introducing DSC technique, the problem of “explosion of complexity” inherent in the conventional backstepping method is eliminated. The designed controller ensures the semi-global stabilization of the whole closed-loop system by means of Lyapunov analysis method. The effectiveness of the proposed approach is demonstrated through a numerical example.
Journal Article
Functional analyses of small secreted cysteine‐rich proteins identified candidate effectors in Verticillium dahliae
2020
Secreted small cysteine‐rich proteins (SCPs) play a critical role in modulating host immunity in plant–pathogen interactions. Bioinformatic analyses showed that the fungal pathogen Verticillium dahliae encodes more than 100 VdSCPs, but their roles in host–pathogen interactions have not been fully characterized. Transient expression of 123 VdSCP‐encoding genes in Nicotiana benthamiana identified three candidate genes involved in host–pathogen interactions. The expression of these three proteins, VdSCP27, VdSCP113, and VdSCP126, in N. benthamiana resulted in cell death accompanied by a reactive oxygen species burst, callose deposition, and induction of defence genes. The three VdSCPs mainly localized to the periphery of the cell. BAK1 and SOBIR1 (associated with receptor‐like protein) were required for the immunity triggered by these three VdSCPs in N. benthamiana. Site‐directed mutagenesis showed that cysteine residues that form disulphide bonds are essential for the functioning of VdSCP126, but not VdSCP27 and VdSCP113. VdSCP27, VdSCP113, and VdSCP126 individually are not essential for V. dahliae infection of N. benthamiana and Gossypium hirsutum, although there was a significant reduction of virulence on N. benthamiana and G. hirsutum when inoculated with the VdSCP27/VdSCP126 double deletion strain. These results illustrate that the SCPs play a critical role in the V. dahliae–plant interaction via an intrinsic virulence function and suppress immunity following infection.
Small cysteine‐rich proteins secreted by Verticillium dahliae play critical roles in interactions with hosts via an intrinsic virulence function and can suppress immunity following infection.
Journal Article
Lysin Motif (LysM) Proteins: Interlinking Manipulation of Plant Immunity and Fungi
by
Li, Jun-Jiao
,
Chen, Jie-Yin
,
Dhar, Nikhilesh
in
Amino Acid Motifs
,
Fungi - metabolism
,
Host-Pathogen Interactions
2021
The proteins with lysin motif (LysM) are carbohydrate-binding protein modules that play a critical role in the host-pathogen interactions. The plant LysM proteins mostly function as pattern recognition receptors (PRRs) that sense chitin to induce the plant’s immunity. In contrast, fungal LysM blocks chitin sensing or signaling to inhibit chitin-induced host immunity. In this review, we provide historical perspectives on plant and fungal LysMs to demonstrate how these proteins are involved in the regulation of plant’s immune response by microbes. Plants employ LysM proteins to recognize fungal chitins that are then degraded by plant chitinases to induce immunity. In contrast, fungal pathogens recruit LysM proteins to protect their cell wall from hydrolysis by plant chitinase to prevent activation of chitin-induced immunity. Uncovering this coevolutionary arms race in which LysM plays a pivotal role in manipulating facilitates a greater understanding of the mechanisms governing plant-fungus interactions.
Journal Article
Changes in nitrogen and phosphorus cycling suggest a transition to phosphorus limitation with the stand development of larch plantations
2018
Aims The changes of nutrient limitation status for tree growth across a plantation chronosequence have great implications for plantation management. The underlying mechanisms for such a shift, however, have seldom been addressed. While plant nutrient use strategies would change in response to soil nutrient alteration, they may also create feedback on soil nutrient dynamics and thus plant nutrient limitation status. Methods We examined soil and foliar nutrients of larch (Larix kaempferi), the dominant timber species in Northeast China, across a plantation chronosequence. Results Total soil N increased but total soil P decreased across the chronosequence. Similarly, N concentrations in the green leaves were positively correlated, and P concentrations were negatively correlated with stand age. Foliar N:P ratios, N and P resorption efficiencies and PRE:NRE were positively correlated with stand age, indicating the shift from N-limitation to P-limitation across the chronosequence. P concentration in senesced leaves decreased and N:P ratios increased across the chronosequence, which has implications for decomposition and nutrient release. Conclusions Nutrient resorption, soil pH, biomass P sequestration and imbalanced inputs of N and P would contribute to the occurrence of P-limitation with increased stand age. Furthermore, adaptive fertilization management strategies should consider the shift of nutrient limitation patterns across the chronosequence.
Journal Article
Aerodynamic performance modeling method of high-altitude propellers across the entire flight envelope
by
Zhang, Miao
,
Zhang, Zijian
,
Zhang, Jian
in
639/166/984
,
639/705/1041
,
Aerodynamic performance
2025
High-altitude propellers experience diverse aerodynamic conditions, due to the extensive altitude variation and wide range of wind speeds encountered in the flight envelope of High Altitude Long Endurance (HALE) aircraft. Developing a high-precision aerodynamic model requires extensive high-fidelity data. This data is indispensable for aircraft design and control but incurs significant costs. According to the extensive altitude range of HALE aircraft, this paper proposes two efficient and cost-effective modeling methods, the Global Surrogate Model (GSM) and the Stratified Interpolation Surrogate Model (SISM), to acquire the aerodynamic data. Both models are assessed using different performance metrics, including the mean relative error (MRE) and the maximum relative error (MARE), to evaluate their predictive capabilities. The comparative results reveal that the aerodynamic characteristics of high-altitude propellers exhibit highly nonlinear trends in response to changes in altitude. In this study, the two surrogate model construction methods are employed, and it is found that SISM offers superior model accuracy. Specifically, when compared to GSM with an equal number of high-fidelity samples, SISM demonstrates a 2.16% increase in model accuracy. These findings provide a cost-effective approach for HALE propeller modeling.
Journal Article
Population genomics demystifies the defoliation phenotype in the plant pathogen Verticillium dahliae
by
Kong, Zhi-Qiang
,
Huang, Jin-Qun
,
Subbarao, Krishna V.
in
Abscisic acid
,
amide hydrolases
,
Base Sequence
2019
Verticillium dahliae is a broad host-range pathogen that causes vascular wilts in plants. Interactions between three hosts and specific V. dahliae genotypes result in severe defoliation. The underlying mechanisms of defoliation are unresolved.
Genome resequencing, gene deletion and complementation, gene expression analysis, sequence divergence, defoliating phenotype identification, virulence analysis, and quantification of V. dahliae secondary metabolites were performed.
Population genomics previously revealed that G-LSR2 was horizontally transferred from the fungus Fusarium oxysporum f. sp. vasinfectum to V. dahliae and is exclusively found in the genomes of defoliating (D) strains. Deletion of seven genes within G-LSR2, designated as VdDf genes, produced the nondefoliation phenotype on cotton, olive, and okra but complementation of two genes restored the defoliation phenotype. Genes VdDf5 and VdDf6 associated with defoliation shared homology with polyketide synthases involved in secondary metabolism, whereas VdDf7 shared homology with proteins involved in the biosynthesis of N-lauroylethanolamine (N-acylethanolamine (NAE) 12:0), a compound that induces defoliation. NAE overbiosynthesis by D strains also appears to disrupt NAE metabolism in cotton by inducing overexpression of fatty acid amide hydrolase.
The VdDfs modulate the synthesis and overproduction of secondary metabolites, such as NAE 12:0, that cause defoliation either by altering abscisic acid sensitivity, hormone disruption, or sensitivity to the pathogen.
Journal Article
A secreted ribonuclease effector from Verticillium dahliae localizes in the plant nucleus to modulate host immunity
by
Subbarao, Krishna V.
,
Hu, Xiao‐Ping
,
Wang, Dan
in
Agricultural production
,
Apoptosis
,
Binding sites
2022
The arms race between fungal pathogens and plant hosts involves recognition of fungal effectors to induce host immunity. Although various fungal effectors have been identified, the effector functions of ribonucleases are largely unknown. Herein, we identified a ribonuclease secreted by Verticillium dahliae (VdRTX1) that translocates into the plant nucleus to modulate immunity. The activity of VdRTX1 causes hypersensitive response (HR)‐related cell death in Nicotiana benthamiana and cotton. VdRTX1 possesses a signal peptide but is unlikely to be an apoplastic effector because its nuclear localization in the plant is necessary for cell death induction. Knockout of VdRTX1 significantly enhanced V. dahliae virulence on tobacco while V. dahliae employs the known suppressor VdCBM1 to escape the immunity induced by VdRTX1. VdRTX1 homologs are widely distributed in fungi but transient expression of 24 homologs from other fungi did not yield cell death induction, suggesting that this function is specific to the VdRTX1 in V. dahliae. Expression of site‐directed mutants of VdRTX1 in N. benthamiana leaves revealed conserved ligand‐binding sites that are important for VdRTX1 function in inducing cell death. Thus, VdRTX1 functions as a unique HR‐inducing effector in V. dahliae that contributes to the activation of plant immunity.
Verticillium dahliae ribonuclease VdRTX1 functions as an effector to modulate plant immunity.
Journal Article
The Gossypium hirsutum TIR‐NBS‐LRR gene GhDSC1 mediates resistance against Verticillium wilt
by
Liu, Ting‐Li
,
Subbarao, Krishna V.
,
Wang, Dan
in
Acid resistance
,
Analysis
,
Arabidopsis thaliana
2019
Summary
Improving genetic resistance is a preferred method to manage Verticillium wilt of cotton and other hosts. Identifying host resistance is difficult because of the dearth of resistance genes against this pathogen. Previously, a novel candidate gene involved in Verticillium wilt resistance was identified by a genome‐wide association study using a panel of Gossypium hirsutum accessions. In this study, we cloned the candidate resistance gene from cotton that encodes a protein sharing homology with the TIR‐NBS‐LRR receptor‐like defence protein DSC1 in Arabidopsis thaliana (hereafter named GhDSC1). GhDSC1 expressed at higher levels in response to Verticillium wilt and jasmonic acid (JA) treatment in resistant cotton cultivars as compared to susceptible cultivars and its product was localized to nucleus. The transfer of GhDSC1 to Arabidopsis conferred Verticillium resistance in an A. thaliana dsc1 mutant. This resistance response was associated with reactive oxygen species (ROS) accumulation and increased expression of JA‐signalling‐related genes. Furthermore, the expression of GhDSC1 in response to Verticillium wilt and JA signalling in A. thaliana displayed expression patterns similar to GhCAMTA3 in cotton under identical conditions, suggesting a coordinated DSC1 and CAMTA3 response in A. thaliana to Verticillium wilt. Analyses of GhDSC1 sequence polymorphism revealed a single nucleotide polymorphism (SNP) difference between resistant and susceptible cotton accessions, within the P‐loop motif encoded by GhDSC1. This SNP difference causes ineffective activation of defence response in susceptible cultivars. These results demonstrated that GhDSC1 confers Verticillium resistance in the model plant system of A. thaliana, and therefore represents a suitable candidate for the genetic engineering of Verticillium wilt resistance in cotton.
Journal Article
A polyketide synthase from Verticillium dahliae modulates melanin biosynthesis and hyphal growth to promote virulence
by
Kong, Zhi-Qiang
,
Subbarao, Krishna V.
,
Chen, Feng-Mao
in
Adaptation
,
Analysis
,
Biomedical and Life Sciences
2022
Background
During the disease cycle, plant pathogenic fungi exhibit a morphological transition between hyphal growth (the phase of active infection) and the production of long-term survival structures that remain dormant during “overwintering.”
Verticillium dahliae
is a major plant pathogen that produces heavily melanized microsclerotia (MS) that survive in the soil for 14 or more years. These MS are multicellular structures produced during the necrotrophic phase of the disease cycle. Polyketide synthases (PKSs) are responsible for catalyzing production of many secondary metabolites including melanin. While MS contribute to long-term survival, hyphal growth is key for infection and virulence, but the signaling mechanisms by which the pathogen maintains hyphal growth are unclear.
Results
We analyzed the VdPKSs that contain at least one conserved domain potentially involved in secondary metabolism (SM), and screened the effect of
VdPKS
deletions in the virulent strain AT13. Among the five
VdPKSs
whose deletion affected virulence on cotton, we found that
VdPKS9
acted epistatically to the
VdPKS1
-associated melanin pathway to promote hyphal growth. The decreased hyphal growth in
VdPKS9
mutants was accompanied by the up-regulation of melanin biosynthesis and MS formation. Overexpression of
VdPKS9
transformed melanized hyphal-type (MH-type) into the albinistic hyaline hyphal-type (AH-type), and
VdPKS9
was upregulated in the AH-type population, which also exhibited higher virulence than the MH-type.
Conclusions
We show that VdPKS9 is a powerful negative regulator of both melanin biosynthesis and MS formation in
V. dahliae
. These findings provide insight into the mechanism of how plant pathogens promote their virulence by the maintenance of vegetative hyphal growth during infection and colonization of plant hosts, and may provide novel targets for the control of melanin-producing filamentous fungi.
Journal Article