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result(s) for
"Johnston, T. M. Shaun"
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Standing Internal Tides in the Tasman Sea Observed by Gliders
by
Kelly, Samuel M.
,
Johnston, T. M. Shaun
,
Rudnick, Daniel L.
in
Altimetric observations
,
Altimetry
,
Antinodes
2015
Low-mode internal tides are generated at tall submarine ridges, propagate across the open ocean with little attenuation, and reach distant continental slopes. A semidiurnal internal tide beam, identified in previous altimetric observations and modeling, emanates from the Macquarie Ridge, crosses the Tasman Sea, and impinges on the Tasmanian slope. Spatial surveys covering within 150 km of the slope by two autonomous underwater gliders with maximum profile depths of 500 and 1000 m show the steepest slope near 43°S reflects almost all of the incident energy flux to form a standing wave. Starting from the slope and moving offshore by one wavelength (~150 km), potential energy density displays an antinode–node–antinode–node structure, while kinetic energy density shows the opposite. Mission-mean mode-1 incident and reflected flux magnitudes are distinguished by treating each glider’s survey as an internal wave antenna for measuring amplitude, wavelength, and direction. Incident fluxes are 1.4 and 2.3 kW m −1 from the two missions, while reflected fluxes are 1.2 and 1.8 kW m −1 . From one glider surveying the region of highest energy at the steepest slope, the reflectivity estimates are 0.8 and 1, if one considers the kinetic and potential energy densities separately. These results are in agreement with mode-1 reflectivity of 0.7–1 from a model in one horizontal dimension with realistic topography and stratification. The direction of the incident internal tides is consistent with altimetry and modeling, while the reflected tide is consistent with specular reflection from a straight coastline.
Journal Article
Observations of the Transition Layer
by
Johnston, T. M. Shaun
,
Rudnick, Daniel L.
in
Dynamics of the ocean (upper and deep oceans)
,
Earth, ocean, space
,
Exact sciences and technology
2009
The transition layer is the poorly understood interface between the stratified, weakly turbulent interior and the strongly turbulent surface mixed layer. The transition layer displays elevated thermohaline variance compared to the interior and maxima in current shear, vertical stratification, and potential vorticity. A database of 91 916 km or 25 426 vertical profiles of temperature and salinity from SeaSoar, a towed vehicle, is used to define the transition layer thickness. Acoustic Doppler current measurements are also used, when available. Statistics of the transition layer thickness are compared for 232 straight SeaSoar sections, which range in length from 65 to 1129 km with typical horizontal resolution of ∼4 km and vertical resolution of 8 m. Transition layer thicknesses are calculated in three groups from 1) vertical displacements of the mixed layer base and of interior isopycnals into the mixed layer; 2) the depths below the mixed layer depth of peaks in shear, stratification, and potential vorticity and their widths; and 3) the depths below or above the mixed layer depth of extrema in thermohaline variance, density ratio, and isopycnal slope. From each SeaSoar section, the authors compile either a single value or a median value for each of the above measures. Each definition yields a median transition layer thickness from 8 to 24 m below the mixed layer depth. The only exception is the median depth of the maximum isopycnal slope, which is 37 m above the mixed layer base, but its mode is 15–25 m above the mixed layer base. Although the depths of the stratification, shear, and potential vorticity peaks below the mixed layer are not correlated with the mixed layer depth, the widths of the shear and potential vorticity peaks are. Transition layer thicknesses from displacements and the full width at half maximum of the shear and potential vorticity peak give transition layer thicknesses from 0.11× to 0.22× the mean depth of the mixed layer. From individual profiles, the depth of the shear peak below the stratification peak has a median value of 6 m, which shows that momentum fluxes penetrate farther than buoyancy fluxes. A typical horizontal scale of 5–10 km for the transition layer comes from the product of the isopycnal slope and a transition layer thickness suggesting the importance of submesoscale processes in forming the transition layer. Two possible parameterizations for transition layer thickness are 1) a constant of 11–24 m below the mixed layer depth as found for the shear, stratification, potential vorticity, and thermohaline variance maxima and the density ratio extrema; and 2) a linear function of mixed layer depth as found for isopycnal displacements and the widths of the shear and potential vorticity peaks.
Journal Article
Measuring Temperature in Coral Reef Environments: Experience, Lessons, and Results from Palau
2020
Sea surface temperature, determined remotely by satellite (SSST), measures only the thin “skin” of the ocean but is widely used to quantify the thermal regimes on coral reefs across the globe. In situ measurements of temperature complements global satellite sea surface temperature with more accurate measurements at specific locations/depths on reefs and more detailed data. In 1999, an in situ temperature-monitoring network was started in the Republic of Palau after the 1998 coral bleaching event. Over two decades the network has grown to 70+ stations and 150+ instruments covering a 700 km wide geographic swath of the western Pacific dominated by multiple oceanic currents. The specific instruments used, depths, sampling intervals, precision, and accuracy are considered with two goals: to provide comprehensive general coverage to inform global considerations of temperature patterns/changes and to document the thermal dynamics of many specific habitats found within a highly diverse tropical marine location. Short-term in situ temperature monitoring may not capture broad patterns, particularly with regard to El Niño/La Niña cycles that produce extreme differences. Sampling over two decades has documented large T signals often invisible to SSST from (1) internal waves on time scales of minutes to hours, (2) El Niño on time scales of weeks to years, and (3) decadal-scale trends of +0.2 °C per decade. Network data have been used to create a regression model with SSST and sea surface height (SSH) capable of predicting depth-varying thermal stress. The large temporal, horizontal, and vertical variability noted by the network has further implications for thermal stress on the reef. There is a dearth of definitive thermal information for most coral reef habitats, which undermines the ability to interpret biological events from the most basic physical perspective.
Journal Article
The formation and fate of internal waves in the South China Sea
by
Graber, Hans C.
,
Jachec, Steven M.
,
Farmer, David M.
in
704/106/829/2737
,
Gravity
,
Humanities and Social Sciences
2015
Internal oceanic waves are subsurface gravity waves that can be enormous and travel thousands of kilometres before breaking but they are difficult to study; here observations of such waves in the South China Sea reveal their formation mechanism, extreme turbulence, relationship to the Kuroshio Current and energy budget.
IWISE catches internal waves mid-ocean
Internal waves are the underwater version of more familiar surface waves. They can be enormous and travel thousands of kilometres before breaking. The South China Sea is known to be home to the largest internal waves in the world's oceans, but their size, generation mechanisms and role in the regional energy budget are unknown. Matthew Alford and colleagues now present the results from the IWISE observational campaign and reveal that internal waves more than 200 metres high break in the South China Sea and create turbulence that is orders of magnitude larger than in the open ocean, and that wave formation is influenced by the Kuroshio current. These results now allow for a complete energy budget of the South China Sea, and for a more accurate incorporation of internal waves into climate models.
Internal gravity waves, the subsurface analogue of the familiar surface gravity waves that break on beaches, are ubiquitous in the ocean. Because of their strong vertical and horizontal currents, and the turbulent mixing caused by their breaking, they affect a panoply of ocean processes, such as the supply of nutrients for photosynthesis
1
, sediment and pollutant transport
2
and acoustic transmission
3
; they also pose hazards for man-made structures in the ocean
4
. Generated primarily by the wind and the tides, internal waves can travel thousands of kilometres from their sources before breaking
5
, making it challenging to observe them and to include them in numerical climate models, which are sensitive to their effects
6
,
7
. For over a decade, studies
8
,
9
,
10
,
11
have targeted the South China Sea, where the oceans’ most powerful known internal waves are generated in the Luzon Strait and steepen dramatically as they propagate west. Confusion has persisted regarding their mechanism of generation, variability and energy budget, however, owing to the lack of
in situ
data from the Luzon Strait, where extreme flow conditions make measurements difficult. Here we use new observations and numerical models to (1) show that the waves begin as sinusoidal disturbances rather than arising from sharp hydraulic phenomena, (2) reveal the existence of >200-metre-high breaking internal waves in the region of generation that give rise to turbulence levels >10,000 times that in the open ocean, (3) determine that the Kuroshio western boundary current noticeably refracts the internal wave field emanating from the Luzon Strait, and (4) demonstrate a factor-of-two agreement between modelled and observed energy fluxes, which allows us to produce an observationally supported energy budget of the region. Together, these findings give a cradle-to-grave picture of internal waves on a basin scale, which will support further improvements of their representation in numerical climate predictions.
Journal Article
Elevated mixing at a front
by
Johnston, T. M. Shaun
,
Rudnick, Daniel L.
,
Pallàs-Sanz, E.
in
California Current
,
Chlorophyll
,
Chlorophylls
2011
The mesoscale, submesoscale, and microscale structure of a front in the California Current was observed using a towed vehicle outfitted with microconductivity sensors. Thirteen >60 km cross‐front sections from 0 to 350 m in depth were covered in 3.5 days. Objectively mapped data are fit via the Omega (ω) equation to obtain vertical velocity. A composite cross‐front section shows elevated mixing on the dense side within 10–20 km of the front. Water downwells and gradients are elevated there: i.e., Rossby number (Ro), horizontal strain (α), spice gradients, and microscale thermal dissipation (χ). Thermal eddy diffusivity (KT) reaches 10−3 m2 s−1 and increases 3–10× from the anticyclonic to the cyclonic side with a depth mean of ∼10−4 m2 s−1. The spatial structure of KT, Ro, and α are similar on the dense side, suggesting an energy cascade from the mesoscale via the submesoscale to the microscale. However, it is unclear whether frontogenesis, internal wave blocking by elevated vorticity, or internal wave trapping by large α produces the elevated mixing. The mean turbulent heat flux opposes the mean restratifying, mesoscale heat flux of 10 W m−2 and may allow the front to persist. Turbulent nitrate fluxes are 0.1–0.3 mmol m−2 s−1. Chlorophyll fluorescence and beam transmission reveal a <6 km wide, ∼100 km long alongfront streamer which is a deep biomass maximum. Time scales for mixing and nutrient fluxes are 0.3–3 days, which are similar to phytoplankton growth rates and the time scale for frontal evolution. Key Points Elevated mixing on dense side related to Rossby number and strain Mean turbulent heat flux opposes mean restratifying, mesoscale heat flux Similar time scales for mixing, frontal evolution, and nutrient fluxes
Journal Article
Decay Mechanisms of Near-Inertial Mixed Layer Oscillations in the Bay of Bengal
by
Chaudhuri, Dipanjan
,
Johnston, T.M. Shaun
,
Rudnick, Daniel L.
in
BAY OF BENGAL: FROM MONSOONS TO MIXING
,
Energy
,
Inertia
2016
Winds generate inertial and near-inertial currents in the upper ocean. These currents dominate the kinetic energy and contain most of the vertical shear in horizontal currents. Subsequent shear instabilities lead to mixing. In the Bay of Bengal, the annual mean wind energy input and near-inertial mixed layer energy is almost as large as in the mid-latitude storm tracks. Also, mixing associated with these waves is known to affect mixed layer heat content, sea surface temperature, and, thus, precipitation in coupled global models. Therefore, the mechanisms leading to the decay of these currents in the mixed layer and below are of considerable importance. Two such decay mechanisms are examined here. One mechanism is the downward propagation of near-inertial internal waves, which is aided by the mesoscale circulation and is observed with a rapidly profiling float. In a few days (faster than at mid-latitudes), the near-inertial wave group propagated from the base of the mixed layer to 250 m depth in the stratified interior. Another decay mechanism is enhanced shear generation at the mixed layer base from periodic alignment of rotating, near-inertial current shear and winds, which is observed with a mooring and analyzed with a simple two-layer model.
Journal Article
Interference Pattern and Propagation of the M2 Internal Tide South of the Hawaiian Ridge
by
Carter, Glenn S.
,
Pinkel, Robert
,
Johnston, T. M. Shaun
in
Dynamics of the ocean (upper and deep oceans)
,
Earth, ocean, space
,
Exact sciences and technology
2010
Most of the M2 internal tide energy generated at the Hawaiian Ridge radiates away in modes 1 and 2, but direct observation of these propagating waves is complicated by the complexity of the bathymetry at the generation region and by the presence of interference patterns. Observations from satellite altimetry, a tomographic array, and the R/P FLIP taken during the Farfield Program of the Hawaiian Ocean Mixing Experiment (HOME) are found to be in good agreement with the output of a high-resolution primitive equation model, simulating the generation and propagation of internal tides. The model shows that different modes are generated with different amplitudes along complex topography. Multiple sources produce internal tides that sum constructively and destructively as they propagate. The major generation sites can be identified using a simplified 2D idealized knife-edge ridge model. Four line sources located on the Hawaiian Ridge reproduce the interference pattern of sea surface height and energy flux density fields from the numerical model for modes 1 and 2. Waves from multiple sources and their interference pattern have to be taken into account to correctly interpret in situ observations and satellite altimetry.
Journal Article
NGARAARD PINNACLE, PALAU
by
Colin, Patrick L.
,
Johnston, T.M. Shaun
,
Rudnick, Daniel L.
in
Algae
,
El Nino
,
El Nino phenomena
2019
This paper uses the Flow Encountering Abrupt Topography (FLEAT) experiment’s unique data set to examine and document the biophysical environment of an unusual low-light reef habitat in the western tropical Pacific Ocean. Located 1.6 km seaward of the eastern coast of Palau, Ngaraard Pinnacle (NP) rises from the deep ocean to 92 m depth, constituting an “island” where such a habitat exists. Low-light reef habitats have not been well studied and are different from those of typical shallow reef systems. Water temperatures recorded at NP using bottom-mounted temperature loggers vary on two timescales, from hours to days and over months, related to the El Niño-Southern Oscillation (ENSO). This environment is subject to tremendous temperature variability; from 2010 to 2019 temperatures were below or near the lower limits of life for photophilic reefs for months. Mean temperatures shifted 10°–12°C in six months, with low values associated with El Niño and high values with La Niña. The ENSO-related temperatures at NP were similar to those recorded at stations along the main reef, making it among the most variable environments observed in the tropical western Pacific. The stratified water column above NP was subject to sheared currents moving in opposite directions. In this variable physical environment, the biological community is characterized by a modest number of reef invertebrates, very low algal cover, and a diverse and abundant reef fish community. The biophysical data collected at NP show how this rarely observed environment supports the observed community.
Journal Article
The Equatorial Current System West of the Galápagos Islands during the 2014–16 El Niño as Observed by Underwater Gliders
by
Owens, W. Brechner
,
Rudnick, Daniel L.
,
Johnston, T. M. Shaun
in
Advection
,
Deployment
,
El Nino
2021
The strong El Niño of 2014–16 was observed west of the Galápagos Islands through sustained deployment of underwater gliders. Three years of observations began in October 2013 and ended in October 2016, with observations at longitudes 93° and 95°W between latitudes 2°N and 2°S. In total, there were over 3000 glider-days of data, covering over 50 000 km with over 12 000 profiles. Coverage was superior closer to the Galápagos on 93°W, where gliders were equipped with sensors to measure velocity as well as temperature, salinity, and pressure. The repeated glider transects are analyzed to produce highly resolved mean sections and maps of observed variables as functions of time, latitude, and depth. The mean sections reveal the structure of the Equatorial Undercurrent (EUC), the South Equatorial Current, and the equatorial front. The mean fields are used to calculate potential vorticity Q and Richardson number Ri. Gradients in the mean are strong enough to make the sign of Q opposite to that of planetary vorticity and to have Ri near unity, suggestive of mixing. Temporal variability is dominated by the 2014–16 El Niño, with the arrival of depressed isopycnals documented in 2014 and 2015. Increases in eastward velocity advect anomalously salty water and are uncorrelated with warm temperatures and deep isopycnals. Thus, vertical advection is important to changes in heat, and horizontal advection is relevant to changes in salt. Implications of this work include possibilities for future research, model assessment and improvement, and sustained observations across the equatorial Pacific.
Journal Article
Turbulent erosion of a subducting intrusion in the Western Mediterranean Sea
by
Johnston, T. M. Shaun
,
Testa, Giovanni
,
Pasculli, Lorenzo
in
Analysis
,
Anticyclones
,
Biogeochemical cycle
2025
Frontal zones within the Western Alboran Gyre (WAG) are characterized by a density gradient resulting from the convergence of Atlantic and Mediterranean waters. Subduction along isopycnals at the WAG periphery can play a crucial role in upper-ocean ventilation and influences its stratification and biogeochemical cycles. In 2019, physical parameters (comprising temperature, salinity, turbulent kinetic energy dissipation rates) and biogeochemical data (oxygen and chlorophyll a) profiles were collected in transects along the northern edge of the WAG. Several intrusions of subducted water with elevated oxygen, chlorophyll a, and spice anomaly were identified towards the center of the anticyclone. These features had elevated kinetic energy dissipation rates on both their upper and lower boundaries. Analysis of the turbulent fluxes involving heat, salt, oxygen, and chlorophyll a demonstrated a net flux of physical and biogeochemical properties from the intrusions to the surrounding ocean. Either the turbulent or diffusive convection mixing contributed to the observed dilution of the intrusion. Other factors (e.g., water column density stability, variability of the photic layer depth, and organic matter degradation) likely played a role in these dynamics. Enhanced comprehension of the persistence and extent of these features might lead to an improved quantitative parameterization of relevant physical and biogeochemical properties involved in subduction within the study zone.
Journal Article