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"Jonas, M."
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Transforming learning : don't let school interfere with your laughing
\"The book uses a meta-analysis and meta-synthesis to identify nine areas where humor significantly improves various aspects of the learning environment\"-- Provided by publisher.
Quantum machine learning beyond kernel methods
by
Jerbi, Sofiene
,
Poulsen Nautrup, Hendrik
,
Fiderer, Lukas J.
in
639/705/117
,
639/766/483/481
,
Algorithms
2023
Machine learning algorithms based on parametrized quantum circuits are prime candidates for near-term applications on noisy quantum computers. In this direction, various types of quantum machine learning models have been introduced and studied extensively. Yet, our understanding of how these models compare, both mutually and to classical models, remains limited. In this work, we identify a constructive framework that captures all standard models based on parametrized quantum circuits: that of linear quantum models. In particular, we show using tools from quantum information theory how data re-uploading circuits, an apparent outlier of this framework, can be efficiently mapped into the simpler picture of linear models in quantum Hilbert spaces. Furthermore, we analyze the experimentally-relevant resource requirements of these models in terms of qubit number and amount of data needed to learn. Based on recent results from classical machine learning, we prove that linear quantum models must utilize exponentially more qubits than data re-uploading models in order to solve certain learning tasks, while kernel methods additionally require exponentially more data points. Our results provide a more comprehensive view of quantum machine learning models as well as insights on the compatibility of different models with NISQ constraints.
Comparing the capabilities of different quantum machine learning protocols is difficult. Here, the authors show that different learning models based on parametrized quantum circuits can all be seen as quantum linear models, thus driving general conclusions on their resource requirements and capabilities.
Journal Article
Detergent-free isolation, characterization, and functional reconstitution of a tetrameric K⁺ channel: The power of native nanodiscs
by
Baldus, Marc
,
Dörr, Jonas M.
,
Prokofyev, Alexander V.
in
Bacterial Proteins - chemistry
,
Bacterial Proteins - genetics
,
Bacterial Proteins - isolation & purification
2014
Significance The study of membrane proteins is often hampered by their tendency to misfold when extracted by detergent. Here, we explore a detergent-free approach to isolating membrane proteins while retaining their native lipid environment, making use of an amphipathic polymer that solubilizes intact membrane patches in the form of nanodiscs. Using a potassium channel as a model protein, we show that these “native nanodiscs” are highly thermostable particles that are suitable for spectroscopic studies, allowing structural characterization of the protein in its native environment and direct analysis of the lipids in its immediate surroundings. We also demonstrate that the channel can be reconstituted from nanodiscs into planar lipid bilayers for functional characterization, thus making native nanodiscs an excellent alternative to detergent solubilization.
A major obstacle in the study of membrane proteins is their solubilization in a stable and active conformation when using detergents. Here, we explored a detergent-free approach to isolating the tetrameric potassium channel KcsA directly from the membrane of Escherichia coli , using a styrene-maleic acid copolymer. This polymer self-inserts into membranes and is capable of extracting membrane patches in the form of nanosize discoidal proteolipid particles or “native nanodiscs.” Using circular dichroism and tryptophan fluorescence spectroscopy, we show that the conformation of KcsA in native nanodiscs is very similar to that in detergent micelles, but that the thermal stability of the protein is higher in the nanodiscs. Furthermore, as a promising new application, we show that quantitative analysis of the co-isolated lipids in purified KcsA-containing nanodiscs allows determination of preferential lipid–protein interactions. Thin-layer chromatography experiments revealed an enrichment of the anionic lipids cardiolipin and phosphatidylglycerol, indicating their close proximity to the channel in biological membranes and supporting their functional relevance. Finally, we demonstrate that KcsA can be reconstituted into planar lipid bilayers directly from native nanodiscs, which enables functional characterization of the channel by electrophysiology without first depriving the protein of its native environment. Together, these findings highlight the potential of the use of native nanodiscs as a tool in the study of ion channels, and of membrane proteins in general.
Journal Article
Supercurrent diode effect and magnetochiral anisotropy in few-layer NbSe2
by
Lupton, John M.
,
Bauriedl, Lorenz
,
Fuchs, Lorenz
in
639/301/119/1001
,
639/766/119/1003
,
Anisotropy
2022
Nonreciprocal transport refers to charge transfer processes that are sensitive to the bias polarity. Until recently, nonreciprocal transport was studied only in dissipative systems, where the nonreciprocal quantity is the resistance. Recent experiments have, however, demonstrated nonreciprocal supercurrent leading to the observation of a supercurrent diode effect in Rashba superconductors. Here we report on a supercurrent diode effect in NbSe
2
constrictions obtained by patterning NbSe
2
flakes with both even and odd layer number. The observed rectification is a consequence of the valley-Zeeman spin-orbit interaction. We demonstrate a rectification efficiency as large as 60%, considerably larger than the efficiency of devices based on Rashba superconductors. In agreement with recent theory for superconducting transition metal dichalcogenides, we show that the effect is driven by the out-of-plane component of the magnetic field. Remarkably, we find that the effect becomes field-asymmetric in the presence of an additional in-plane field component transverse to the current direction. Supercurrent diodes offer a further degree of freedom in designing superconducting quantum electronics with the high degree of integrability offered by van der Waals materials.
The supercurrent diode effect was recently observed in a Nb/V/Ta superlattice thin film with Rashba-type spin-orbit coupling. Here, the authors observe this effect in few-layer NbSe
2
crystals driven by valley-Zeeman-type spin-orbit coupling and find that the effect is proportional to out-of-plane magnetic field.
Journal Article
Sodium-glucose cotransporter 2 (SGLT2) inhibitor initiation and hepatocellular carcinoma prognosis
2022
Introduction Sodium-glucose cotransporter 2 (SGLT2) inhibitors are a relatively new class of antidiabetic drugs. Emerging findings from laboratory studies indicate that SGLT2 inhibitors can improve liver function and suppress the proliferation of hepatocellular carcinoma (HCC) cells. The aim of this study was to test the hypothesis that initiation of SGLT2 inhibitors improves HCC prognosis in a human population. Methods We used National Surveillance, Epidemiology and End Results (SEER)-Medicare linked data in the United States to evaluate the role of SGLT2 inhibitor initiation on the survival of HCC patients. 3,185 HCC patients newly diagnosed between 2014 and 2017 aged 66 years or older with pre-existing type 2 diabetes were included and followed to the end of 2019. Information on SGLT2 inhibitor initiation was extracted from the Medicare Part D file. Results SGLT2 inhibitor initiation was associated with significantly lower mortality risk after adjusting for potential confounders (HR = 0.68, 95% CI = 0.54-0.86) with stronger association for longer duration of use (HR = 0.60, 95% CI = 0.41-0.88). Further, we found that SGLT2 inhibitor initiation was associated with a lower risk mortality risk ranging from 14% to 60% regardless of patient demographic variables, tumor characteristics, and cancer treatments. Conclusion Our large SEER-Medicare linked data study indicates that SGLT2 inhibitor initiation was associated with improved overall survival of HCC patients with pre-existing type 2 diabetes compared with no SGLT2 inhibitor use. Further studies are needed to confirm our findings and elucidate the possible mechanisms behind the association.
Journal Article
OpenLoops 2
by
Buccioni, Federico
,
Jean-Nicolas Lang
,
Lindert, Jonas M
in
Algorithms
,
Automation
,
Electroweak model
2019
We present the new version of OpenLoops, an automated generator of tree and one-loop scattering amplitudes based on the open-loop recursion. One main novelty of OpenLoops 2 is the extension of the original algorithm from NLO QCD to the full Standard Model, including electroweak (EW) corrections from gauge, Higgs and Yukawa interactions. In this context, among several new features, we discuss the systematic bookkeeping of QCD–EW interferences, a flexible implementation of the complex-mass scheme for processes with on-shell and off-shell unstable particles, a special treatment of on-shell and off-shell external photons, and efficient scale variations. The other main novelty is the implementation of the recently proposed on-the-fly reduction algorithm, which supersedes the usage of external reduction libraries for the calculation of tree–loop interferences. This new algorithm is equipped with an automated system that avoids Gram-determinant instabilities through analytic methods in combination with a new hybrid-precision approach based on a highly targeted usage of quadruple precision with minimal CPU overhead. The resulting significant speed and stability improvements are especially relevant for challenging NLO multi-leg calculations and for NNLO applications.
Journal Article
Resonance-aware NLOPS matching for off-shell tt¯ + tW production with semileptonic decays
by
Ježo, Tomáš
,
Lindert, Jonas M.
,
Pozzorini, Stefano
in
Approximation
,
Channels
,
Classical and Quantum Gravitation
2023
A
bstract
The increasingly high accuracy of top-quark studies at the LHC calls for a theoretical description of
t
t
¯
production and decay in terms of exact matrix elements for the full 2 → 6 process that includes the off-shell production and the chain decays of
t
t
¯
and
tW
intermediate states, together with their quantum interference. Corresponding NLO QCD calculations matched to parton showers are available for the case of dileptonic channels and are implemented in the bb4l Monte Carlo generator, which is based on the resonance-aware POWHEG method. In this paper, we present the first NLOPS predictions of this kind for the case of semileptonic channels. In this context, the interplay of off-shell
t
t
¯
+
tW
production with various other QCD and electroweak subprocesses that yield the same semileptonic final state is discussed in detail. On the technical side, we improve the resonance-aware POWHEG procedure by means of new resonance histories based on matrix elements, which enable a realistic separation of
t
t
¯
and
tW
contributions. Moreover, we introduce a general approach which makes it possible to avoid certain spurious terms that arise from the perturbative expansion of decay widths in any off-shell higher-order calculation, and which are large enough to jeopardise physical finite-width effects. These methods are implemented in a new version of the bb4l Monte Carlo generator, which is applicable to all dileptonic and semileptonic channels, and can be extended to fully hadronic channels. The presented results include a NLOPS comparison of off-shell against on-shell
t
t
¯
+
tW
production and decay, where we highlight various non-trivial aspects related to NLO and parton-shower radiation in leptonic and hadronic top decays.
Journal Article
On the Structural Interpretation of the Smets-Wouters \Risk Premium\ Shock
2015
This article shows that the \"risk premium\" shock in Smets and Wouters (2007) can be interpreted as a structural shock to the demand for safe and liquid assets such as short-term U.S. Treasury securities. Several implications of this interpretation are discussed.
Journal Article