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Abstract Background and aims Agroforestry, whereby trees are associated with crops and/or livestock, is expected to mitigate nitrogen (N) losses from agriculture. However, little is known about how nitrification potential, an important process that drives N losses, is affected by agroforestry systems. This study aimed to investigate the effect of different silvopastoral agroforestry systems on soil nitrification potential. Methods Nitrification potential was evaluated in two agroforestry systems (hedgerow and alley cropping) associated with temporary grasslands in Brittany, France. In each system, soil was sampled along a transect spanning from the center of the tree row into the grass alley. Soil nitrification potential was determined ex situ and was explained by univariate and multivariate analysis of variables describing vegetation, physicochemical soil properties, and soil organisms. Results Nitrification potential differed between the two agroforestry systems and among the positions in relation to the trees. In the alley cropping system, nitrification potential was on average 1.5 times higher in the tree row than at 1.5 and 10 m into the grass alley, while in the hedgerow system, nitrification potential at 1.5 m into the grass alley was on average 40% lower than at 10 m into the grass alley. Nitrification potential was strongly correlated with soil pH, whereas no correlation was observed between nitrification potential and community size of soil nitrifiers. Conclusion Our results point out the diverse effects of agroforestry systems on nitrification, a key soil process that is involved in the regulation of N losses.

Suggestions of collapse in small herbivore cycles since the 1980s have raised concerns about the loss of essential ecosystem functions. Whether such phenomena are general and result from extrinsic environmental changes or from intrinsic process stochasticity is currently unknown. Using a large compilation of time series of vole abundances, we demonstrate consistent cycle amplitude dampening associated with a reduction in winter population growth, although regulatory processes responsible for cyclicity have not been lost. The underlying syndrome of change throughout Europe and grass-eating vole species suggests a common climatic driver. Increasing intervals of low-amplitude small herbivore population fluctuations are expected in the future, and these may have cascading impacts on trophic webs across ecosystems.

We study natural DNA polymorphisms and associated phenotypes in the Arabidopsis relative Cardamine hirsuta . We observed strong genetic differentiation among several ancestry groups and broader distribution of Iberian relict strains in European C . hirsuta compared to Arabidopsis. We found synchronization between vegetative and reproductive development and a pervasive role for heterochronic pathways in shaping C . hirsuta natural variation. A single, fast-cycling ChFRIGIDA allele evolved adaptively allowing range expansion from glacial refugia, unlike Arabidopsis where multiple FRIGIDA haplotypes were involved. The Azores islands, where Arabidopsis is scarce, are a hotspot for C . hirsuta diversity. We identified a quantitative trait locus (QTL) in the heterochronic SPL9 transcription factor as a determinant of an Azorean morphotype. This QTL shows evidence for positive selection, and its distribution mirrors a climate gradient that broadly shaped the Azorean flora. Overall, we establish a framework to explore how the interplay of adaptation, demography, and development shaped diversity patterns of 2 related plant species.

Abstract Background and aims Agroforestry, whereby trees are associated with crops and/or livestock, is expected to mitigate nitrogen (N) losses from agriculture. However, little is known about how nitrification potential, an important process that drives N losses, is affected by agroforestry systems. This study aimed to investigate the effect of different silvopastoral agroforestry systems on soil nitrification potential. Methods Nitrification potential was evaluated in two agroforestry systems (hedgerow and alley cropping) associated with temporary grasslands in Brittany, France. In each system, soil was sampled along a transect spanning from the center of the tree row into the grass alley. Soil nitrification potential was determined ex situ and was explained by univariate and multivariate analysis of variables describing vegetation, physicochemical soil properties, and soil organisms. Results Nitrification potential differed between the two agroforestry systems and among the positions in relation to the trees. In the alley cropping system, nitrification potential was on average 1.5 times higher in the tree row than at 1.5 and 10 m into the grass alley, while in the hedgerow system, nitrification potential at 1.5 m into the grass alley was on average 40% lower than at 10 m into the grass alley. Nitrification potential was strongly correlated with soil pH, whereas no correlation was observed between nitrification potential and community size of soil nitrifiers. Conclusion Our results point out the diverse effects of agroforestry systems on nitrification, a key soil process that is involved in the regulation of N losses.

Dissemination of vector-transmitted pathogens depend on the survival and dispersal of the vector and the vector's ability to transmit the pathogen, while the host range of vector and pathogen determine the breath of transmission possibilities. In this study, we address how the interaction between dispersal and plant fidelities of a pathogen (stolbur phytoplasma tuf-a) and its vector (Hyalesthes obsoletus: Cixiidae) affect the emergence of the pathogen. Using genetic markers, we analysed the geographic origin and range expansion of both organisms in Western Europe and, specifically, whether the pathogen's dissemination in the northern range is caused by resident vectors widening their host-plant use from field bindweed to stinging nettle, and subsequent host specialisation. We found evidence for common origins of pathogen and vector south of the European Alps. Genetic patterns in vector populations show signals of secondary range expansion in Western Europe leading to dissemination of tuf-a pathogens, which might be newly acquired and of hybrid origin. Hence, the emergence of stolbur tuf-a in the northern range was explained by secondary immigration of vectors carrying stinging nettle-specialised tuf-a, not by widening the host-plant spectrum of resident vectors with pathogen transmission from field bindweed to stinging nettle nor by primary co-migration from the resident vector's historical area of origin. The introduction of tuf-a to stinging nettle in the northern range was therefore independent of vector's host-plant specialisation but the rapid pathogen dissemination depended on the vector's host shift, whereas the general dissemination elsewhere was linked to plant specialisation of the pathogen but not of the vector.

Wireworms, the soil-dwelling larvae of click beetles (Coleoptera: Elateridae), comprise major pests of several crops worldwide, including maize and potatoes. The current trend towards the reduction in pesticides use has resulted in strong demand for alternative methods to control wireworm populations. This review provides a state-of-the-art of current theory and practice in order to develop new agroecological strategies. The first step should be to conduct a risk assessment based on the production context (e.g., crop, climate, soil characteristics, and landscape) and on adult and/or larval population monitoring. When damage risk appears significant, prophylactic practices can be applied to reduce wireworm abundance (e.g., low risk rotations, tilling, and irrigation). Additionally, curative methods based on natural enemies and on naturally derived insecticides are, respectively, under development or in practice in some countries. Alternatively, practices may target a reduction in crop damage instead of pest abundance through the adoption of selected cultural practices (e.g., resistant varieties, planting and harvesting time) or through the manipulation of wireworm behavior (e.g., companion plants). Practices can be combined in a global Integrated Pest Management (IPM) framework to provide the desired level of crop protection.

Summary Heterodimeric complexes incorporating the lipase‐like proteins EDS1 with PAD4 or SAG101 are central hubs in plant innate immunity. EDS1 functions encompass signal relay from TIR domain‐containing intracellular NLR‐type immune receptors (TNLs) towards RPW8‐type helper NLRs (RNLs) and, in Arabidopsis thaliana , bolstering of signaling and resistance mediated by cell‐surface pattern recognition receptors (PRRs). Increasing evidence points to the activation of EDS1 complexes by small molecule binding. We used CRISPR/Cas‐generated mutant lines and agroinfiltration‐based complementation assays to interrogate functions of EDS1 complexes in Nicotiana benthamiana . We did not detect impaired PRR signaling in N. benthamiana lines deficient in EDS1 complexes or RNLs. Intriguingly, in assays monitoring functions of Sl EDS1‐ Nb EDS1 complexes in N. benthamiana , mutations within the Sl EDS1 catalytic triad could abolish or enhance TNL immunity. Furthermore, nuclear EDS1 accumulation was sufficient for N. benthamiana TNL (Roq1) immunity. Reinforcing PRR signaling in Arabidopsis might be a derived function of the TNL/EDS1 immune sector. Although Solanaceae EDS1 functionally depends on catalytic triad residues in some contexts, our data do not support binding of a TNL‐derived small molecule in the triad environment. Whether and how nuclear EDS1 activity connects to membrane pore‐forming RNLs remains unknown.

The Rpv3 locus is a major determinant of downy mildew resistance in grapevine (Vitis spp.). A selective sweep at this locus was revealed by the DNA genotyping of 580 grapevines, which include a highly diverse set of 265 European varieties that predated the spread of North American mildews, 82 accessions of wild species, and 233 registered breeding lines with North American ancestry produced in the past 150 years. Artificial hybridisation and subsequent phenotypic selection favoured a few Rpv3 haplotypes that were introgressed from wild vines and retained in released varieties. Seven conserved haplotypes in five descent groups of resistant varieties were traced back to their founders: (1) 'Munson', a cross between two of Hermann Jaeger's selections of V. rupestris and V. lincecumii made in the early 1880s in Missouri, (2) V. rupestris 'Ganzin', first utilised for breeding in 1879 by Victor Ganzin in France, (3) 'Noah', selected in 1869 from intermingled accessions of V. riparia and V. labrusca by Otto Wasserzieher in Illinois, (4) 'Bayard', a V. rupestris x V. labrusca offspring generated in 1882 by George Couderc in France, and (5) a wild form closely related to V. rupestris accessions in the Midwestern United States and introgressed into 'Seibel 4614' in the 1880s by Albert Seibel in France. Persistence of these Rpv3 haplotypes across many of the varieties generated by human intervention indicates that a handful of vines with prominent resistance have laid the foundation for modern grape breeding. A rampant hot spot of NB-LRR genes at the Rpv3 locus has provided a distinctive advantage for the adaptation of native North American grapevines to withstand downy mildew. The coexistence of multiple resistance alleles or paralogues in the same chromosomal region but in different haplotypes counteracts efforts to pyramidise them in a diploid individual via conventional breeding.

Powdery mildew caused by f. sp. is one of the main foliar diseases in barley ( L.; ). Naturally occurring resistance genes used in barley breeding are a cost effective and environmentally sustainable strategy to minimize the impact of pathogens, however, the primary gene pool of contains limited diversity owing to recent domestication bottlenecks. To ensure durable resistance against this pathogen, more genes are required that could be unraveled by investigation of secondary barley gene-pool. A large set of ( ) introgression lines (ILs) harboring a diverse set of desirable resistance traits have been developed and are being routinely used as source of novel diversity in gene mapping studies. Nevertheless, this strategy is often compromised by a lack of recombination between the introgressed fragment and the orthologous chromosome of the barley genome. In this study, we fine-mapped a gene conferring resistance to barley powdery mildew. The initial genotyping of two ILs mapping populations with differently sized 2HS introgressions revealed severely reduced interspecific recombination in the region of the introgressed segment, preventing precise localization of the gene. To overcome this difficulty, we developed an alternative strategy, exploiting intraspecific recombination by crossing two ILs with collinear introgressions, one of which carries a powdery mildew resistance gene, while the other doesn't. The intraspecific recombination rate in the -introgressed fragment of 2HS was approximately 20 times higher than it was in the initial simple ILs mapping populations. Using high-throughput genotyping-by-sequencing (GBS), we allocated the resistance gene to a 1.4 Mb interval, based on an estimate using the genome as reference, in populations of only 103 and 146 individuals, respectively, similar to what is expected at this locus in barley. The most likely candidate resistance gene within this interval is part of the coiled-coil nucleotide-binding-site leucine-rich-repeat (CC-NBS-LLR) gene family, which is over-represented among genes conferring strong dominant resistance to pathogens. The reported strategy can be applied as a general strategic approach for identifying genes underlying traits of interest in crop wild relatives.

Pest Risk Analyses (PRAs) are conducted worldwide to decide whether and how exotic plant pests should be regulated to prevent invasion. There is an increasing demand for science-based risk mapping in PRA. Spread plays a key role in determining the potential distribution of pests, but there is no suitable spread modelling tool available for pest risk analysts. Existing models are species specific, biologically and technically complex, and data hungry. Here we present a set of four simple and generic spread models that can be parameterised with limited data. Simulations with these models generate maps of the potential expansion of an invasive species at continental scale. The models have one to three biological parameters. They differ in whether they treat spatial processes implicitly or explicitly, and in whether they consider pest density or pest presence/absence only. The four models represent four complementary perspectives on the process of invasion and, because they have different initial conditions, they can be considered as alternative scenarios. All models take into account habitat distribution and climate. We present an application of each of the four models to the western corn rootworm, Diabrotica virgifera virgifera, using historic data on its spread in Europe. Further tests as proof of concept were conducted with a broad range of taxa (insects, nematodes, plants, and plant pathogens). Pest risk analysts, the intended model users, found the model outputs to be generally credible and useful. The estimation of parameters from data requires insights into population dynamics theory, and this requires guidance. If used appropriately, these generic spread models provide a transparent and objective tool for evaluating the potential spread of pests in PRAs. Further work is needed to validate models, build familiarity in the user community and create a database of species parameters to help realize their potential in PRA practice.