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Serratia marcescens RSC-14 is a Gram-negative bacterium that was previously isolated from the surface-sterilized roots of the Cd-hyperaccumulator Solanum nigrum. The strain stimulates plant growth and alleviates Cd stress in host plants. To investigate the genetic basis for these traits, the complete genome of RSC-14 was obtained by single-molecule real-time sequencing. The genome of S. marcescens RSC-14 comprised a 5.12-Mbp-long circular chromosome containing 4,593 predicted protein-coding genes, 22 rRNA genes, 88 tRNA genes, and 41 pseudogenes. It contained genes with potential functions in plant growth promotion, including genes involved in indole-3-acetic acid (IAA) biosynthesis, acetoin synthesis, and phosphate solubilization. Moreover, annotation using NCBI and Rapid Annotation using Subsystem Technology identified several genes that encode antioxidant enzymes as well as genes involved in antioxidant production, supporting the observed resistance towards heavy metals, such as Cd. The presence of IAA pathway-related genes and oxidative stress-responsive enzyme genes may explain the plant growth-promoting potential and Cd tolerance, respectively. This is the first report of a complete genome sequence of Cd-tolerant S. marcescens and its plant growth promotion pathway. The whole-genome analysis of this strain clarified the genetic basis underlying its phenotypic and biochemical characteristics, underpinning the beneficial interactions between RSC-14 and plants.

Nuclear compartments are thought to play a role in three-dimensional genome organization and gene expression. In mammalian brain, the architecture and dynamics of nuclear compartment-associated genome organization is not known. In this study, we developed Genome Organization using CUT and RUN Technology (GO-CaRT) to map genomic interactions with two nuclear compartments—the nuclear lamina and nuclear speckles—from different regions of the developing mouse, macaque and human brain. Lamina-associated domain (LAD) architecture in cells in vivo is distinct from that of cultured cells, including major differences in LADs previously considered to be cell type invariant. In the mouse and human forebrain, dorsal and ventral neural precursor cells have differences in LAD architecture that correspond to their regional identity. LADs in the human and mouse cortex contain transcriptionally highly active sub-domains characterized by broad depletion of histone-3-lysine-9 dimethylation. Evolutionarily conserved LADs in human, macaque and mouse brain are enriched for transcriptionally active neural genes associated with synapse function. By integrating GO-CaRT maps with genome-wide association study data, we found speckle-associated domains to be enriched for schizophrenia risk loci, indicating a physical relationship between these disease-associated genetic variants and a specific nuclear structure. Our work provides a framework for understanding the relationship between distinct nuclear compartments and genome function in brain development and disease. In the nucleus, specific stretches of DNA are ‘anchored’ to distinct membrane-less compartments that harbor gene regulatory function. Using GO-CaRT, the authors discovered unique aspects of genome architecture in neural precursors in vivo, providing new insights into brain development and disease.

Clinical isolates of species in South Korea are continuously exhibiting high rates of antimicrobial resistance to carbapenems, indicating that there are public health concerns among both healthcare-associated infections and community-associated infections. The aim of this study was to describe the prevalence and characteristics of carbapenem-resistant isolates originating from community hospitals. A total of 817 non-duplicated species were isolated from December 2022 to July 2023 at long-term care facilities and general hospitals in 16 regions geographically distributed throughout South Korea. Bacterial identification and antimicrobial susceptibility testing were performed using the VITEK-2 system. The bacteria were identified as by PCR and as non-baumannii species by rpoB sequence analysis. The carbapenem resistance genes (OXA-23, OXA-48, OXA-58, IMP, VIM, NDM, GES, and KPC) were identified via PCR and sequencing. The genetic relatedness of carbapenem-resistant (CRAB) isolates was assessed by multilocus sequence typing. A total of 659 and 158 non-baumannii isolates, comprising 19 different species, were identified in all 16 regions. The carbapenem resistance rate was 87.4% (n=576) for the isolates, and all the strains produced . For non-baumannii , the rate of carbapenem resistance was 8.9% (n=14); this resistance was primarily caused by (n=9), followed by (n=3) and (n=2). Of the 576 CRAB isolates, clonal complex 92 (CC92) was the predominant genotypes, followed by sequence type 229 (ST229), ST373, ST397, ST447, and ST620. Our results showed the distribution of species and showed that CC92 CRAB clinical isolates with widespread production of were predominant in community hospitals. Our findings suggest that there is a need for urgent and effective methods to reduce carbapenem resistance in in South Korea.

Paddy field ecosystems are crucial for crop production, biodiversity conservation, and ecosystem services. Although previous studies have examined paddy field biodiversity, few have addressed how the distribution and species richness of vegetation and soil seed banks are regulated. This study investigated the distribution of wetland plants and soil seed banks in paddy fields across diverse habitat types and identified factors influencing their patterns. Surveys revealed that conventional paddy field habitats contained only a few herbicide-tolerant species (e.g., Portulaca oleracea L., Cardamine flexuosa With., and Rorippa palustris (L.) Besser). In contrast, organic paddy field habitats exhibited higher species richness and abundance. Cluster analysis and nonmetric multidimensional scaling demonstrated that soil seed bank distribution differed markedly in paddy field habitats with different farming practices and was influenced by distinct soil factors. These findings highlight the importance of understanding vegetation and soil seed bank dynamics in paddy field ecosystems to support biodiversity conservation and sustainable agriculture.

Burkholderia species are widely distributed across wide ecological niches. Many genera of Burkholderia are known to be associated with plants and are involved in processes such as suppression of soil-borne pathogens, acceleration of plant growth and endophytic colonization. In the present study, a strain belonging to the Burkholderia cepacia complex, which was termed JBK9, was isolated. The strain JBK9 showed broad-spectrum antifungal activities against Phytophthora capsici, Fusarium oxysporum , and Rhizoctonia solani , which are representative phytopathogenic fungi, inhibiting their growth by 59.56, 51.92, and 34.22%, respectively. The strain produced an antifungal compound that was confirmed to be pyrrolnitrin by TLC, HPLC, and NMR analyses. Using an in vitro assay for plant root colonization, we observed that the population densities of B. cepacia JBK9 on the upper 1 cm of host plant roots were significantly different between Burkholderia species. The high motility of these strains is likely to have contributed to their efficient root colonization. The isolated strain was evaluated in vivo for its ability to control Phytophthora blight via a pot test. Compared with Burkholderia strains KCTC 2973 and ATCC 25416, B. cepacia JBK9 demonstrated a stronger antifungal activity against P. capsici . The strain B. cepacia JBK9 could be further developed as a biological control agent for pepper plants.

Rice planthoppers and related viral diseases have become one of the most important factors affecting rice production in Asian countries, and the resulting abuse of pesticides is laying a hidden danger for future food security. As the most economically devastating species, the brown planthopper, Nilaparvata lugens (Stål), moves from the tropical Indochina Peninsula to temperate regions where it cannot overwinter annually with the feature of long‐range migration, and eventually appears in paddy fields of most East Asian countries. Compared with the overland migration that has been studied in more detail, there is relatively less understanding of N. lugens’ performance in transnational movement, especially in the representative overseas migration between China and Northeast Asia. Based on the light‐trap data from China and Korea and the matched meteorological data of East Asia in 2016, a typical overseas migration event was basically analyzed. The results are as follows. First, the source area of the N. lugens population in this migration was in southeastern Jiangsu and eastern Shanghai. They took off at dusk on 1 August, flying at the altitude of 1700–2200 m, and landed in southwestern Korea at 02:00–11:00 UTC on 3 August. Second, a southerly airflow belt was the main weather factor for population's overseas migration, and the confrontation between the western Pacific subtropical high and a northern high pressure in southern Korea was the main reason for population to land. Besides, we discussed the one‐off feature of overseas migration compared to overland migration. These results show the close relation between weather systems and the migration dynamics of N. lugens and may extend the perception for N. lugens’ behavioral chain in the long‐range migration between China and Northeast Asia, thus allowing a sufficient time for reasonable and effective control measures.

Herpes zoster (HZ) is caused by reactivation of latent varicella-zoster virus (VZV) when VZV-specific cellular immunity is insufficient to control reactivation. Currently, Shingrix, which contains the VZV gE protein and GSK’s AS01B adjuvant composed of liposomes formulated with cholesterol, monophosphoryl lipid A (MPL) and QS21, is used for prevention of HZ. However, reactogenicity to Shingrix is common leading to poor patient compliance in receiving one or both shots. Here, we evaluated the immunogenicity of a newly formulated gE protein-based HZ vaccine containing Second-generation Lipid Adjuvant (SLA), a synthetic TLR4 ligand, formulated in an oil-in-water emulsion (SLA-SE) without QS21 (gE/SLA-SE). In VZV-primed mouse models, gE/SLA-SE-induced gE-specific humoral and cellular immune responses at comparable levels to those elicited by Shingrix in young mice, as both gE/SLA-SE and Shingrix induce polyfunctional CD4+ T-cell responses. In aged mice, gE/SLA-SE elicited more robust gE-specific T-cell responses than Shingrix. Furthermore, gE/SLA-SE-induced T-cell responses were sustained until 5 months after immunization. Thus, QS21-free, gE/SLA-SE is a promising candidate for development of gE-based HZ vaccines with high immunogenicity—particularly when targeting an older population.

The present study explored whether face-to-face bullying (physical as well as relational), cyberbullying, and teachers’ bullying have a negative impact on adolescent’s mental health and whether there are gender differences. Analyses are based on a representative cross-sectional standardised survey of 10,638 students of the nineth grade of one federal state of Germany. Findings show that psychological cyberbullying is most strongly associated with poor mental health for both boys and girls. Relational bullying by classmates as well as by teachers also show a significant correlation with poor mental health. For girls, there appears to be an additional relationship between sexual cyberbullying and mental health. Physical forms of bullying were not found to be associated with mental health. Implications for research are discussed.

Background: Although herniated disc fragments may resolve spontaneously, the optimal treatment option for massive lumbar disc herniation (LDH) has not been determined. Objective: To evaluate the extent of reduction in the size of massive LDH on magnetic resonance imaging (MRI) and the pain relief effect of transforaminal epidural steroid injection (TFESI) during the study period. Study Design: Retrospective evaluation. Setting: Hospital and ambulatory pain clinic, Korea. Methods: After Institutional Review Board approval, we conducted a retrospective review of 28 patients who underwent at least 2 MRIs during the period from January 2012 to December 2014. The size of the herniated mass was determined from the ratio of the anterior-posterior diameter of the spinal canal (C-value) to the maximum anterior-posterior diameter of the herniated disc (H-value) on axial MRI (C-H ratio). We also analyzed visual analogue scale (VAS) scores at baseline (T0), 2 weeks after the first and second TFESI (T1, T2), and at the second follow-up MRI (T3). Results: The mean C-value was 18.3 ± 2.9 mm. The mean H-value changed from 10.4 ± 1.9 mm to 4.5 ± 2.7 mm, and the mean C-H ratio changed from 58 ± 1.0% to 24 ± 1.4% (P < 0.001). Twenty-four of 28 patients demonstrated a reduction in the size of the herniation, and the mean reduction rate of the C-H ratio was 59%. In 4 patients, the LDH had not resolved on MRI, but the symptoms had diminished to such an extent that surgery was not required. The mean VAS score had significantly decreased at T1 and showed a continued decrease at the time of the last follow-up (P < 0.001). Limitations: This is a retrospective study and only offers data for patients who chose not to undergo surgery. In addition, the timing of repeat MRI was not standardized. Conclusion: The majority of cases of massive LDH demonstrated resolution at variable points between 3 and 21 months. TFESI could provide effective pain relief for patients with massive LDH in the interval without severe neurologic deterioration. IRB approval: Kangdong Sacred Heart Hospital: IRB Number # 14-1-10 Key words: Lumbar disc herniation, magnetic resonance imaging, migration, regression, resorption, sequestration, transforaminal epidural steroid injection

Signal transducer and activator of transcription 3 (STAT3) is a point of convergence for numerous oncogenic signals that are often constitutively activated in many cancerous or transformed cells and some stromal cells in the tumor microenvironment. Persistent STAT3 activation in malignant cells stimulates proliferation, survival, angiogenesis, invasion, and tumor-promoting inflammation. STAT3 undergoes activation through phosphorylation on tyrosine 705, which facilitates its dimerization. Dimeric STAT3 translocates to the nucleus, where it regulates the transcription of genes involved in cell proliferation, survival, etc. In the present study, a synthetic deguelin analogue SH48, discovered by virtual screening, inhibited the phosphorylation, nuclear translocation, and transcriptional activity of STAT3 in H-ras transformed human mammary epithelial MCF-10A cells (MCF10A-ras). We speculated that SH48 bearing an α,β-unsaturated carbonyl group could interact with a thiol residue of STAT3, thereby inactivating this transcription factor. Non-electrophilic analogues of SH48 failed to inhibit STAT3 activation, lending support to the above supposition. By utilizing a biotinylated SH48, we were able to demonstrate the complex formation between SH48 and STAT3. SH48 treatment to MCF10A-ras cells induced autophagy, which was verified by staining with a fluorescent acidotropic probe, LysoTracker Red, as well as upregulating the expression of LC3II and p62. In conclusion, the electrophilic analogue of deguelin interacts with STAT3 and inhibits its activation in MCF10A-ras cells, which may account for its induction of autophagic death.