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"Jun-qing, Li"
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Reproductive isolation in alpine gingers
2018
Multiple barriers may contribute to reproductive isolation between closely related species. Understanding the relative strength of these barriers can illuminate the ecological factors that currently maintain species integrity and how these factors originally promoted speciation. Two Himalayan alpine gingers, Roscoea purpurea and R. tumjensis, occur sympatrically in central Nepal and have such similar morphology that it is not clear whether or how they maintain a distinct identity. Our quantitative measurements of the components of reproductive isolation show that they are, in fact, completely isolated by a combination of phenological displacement of flowering, earlier for R. tumjensis and later for R. purpurea, and complete fidelity of visitation by different pollinator species, bumblebees for R. tumjensis and a long-tongued fly for R. purpurea. Furthermore, the nectar of R. tumjensis flowers is available to the shorter tongued bumblebees while R. purpurea nectar is less accessible, requiring deep probing from long-tongued flies. Although flowering phenology is a strong current barrier that seemingly obviates any need for pollinator discrimination, this current pattern need not reflect selective forces occurring at the initial divergence of R. tumjensis. There has been considerable pollinator switching during the radiation of the Himalayan Roscoea, and the association of flowering time with type of pollinator in these sympatric species may have originated among the earliest or latest flowering individuals or populations of an ancestor to exploit either bumblebee activity early in the breeding season or long-tongued fly abundance later in the season. These two sympatric Roscoea species add to accumulating evidence of the primacy of prezygotic pollination traits in speciation among angiosperms even in the absence of postzygotic incompatibility.
Journal Article
Chloroplast Genome Evolution in Four Montane Zingiberaceae Taxa in China
by
Zhao, Jian-Li
,
Yang, Qian
,
Wu, Zhi-Qiang
in
Adaptation
,
adaptive evolution
,
chloroplast genome
2022
Chloroplasts are critical to plant survival and adaptive evolution. The comparison of chloroplast genomes could provide insight into the adaptive evolution of closely related species. To identify potential adaptive evolution in the chloroplast genomes of four montane Zingiberaceae taxa ( Cautleya , Roscoea , Rhynchanthus , and Pommereschea ) that inhabit distinct habitats in the mountains of Yunnan, China, the nucleotide sequences of 13 complete chloroplast genomes, including five newly sequenced species, were characterized and compared. The five newly sequenced chloroplast genomes (162,878–163,831 bp) possessed typical quadripartite structures, which included a large single copy (LSC) region, a small single copy (SSC) region, and a pair of inverted repeat regions (IRa and IRb), and even though the structure was highly conserved among the 13 taxa, one of the rps19 genes was absent in Cautleya , possibly due to expansion of the LSC region. Positive selection of rpoA and ycf2 suggests that these montane species have experienced adaptive evolution to habitats with different sunlight intensities and that adaptation related to the chloroplast genome has played an important role in the evolution of Zingiberaceae taxa.
Journal Article
Responses of an endemic species (Roscoea humeana) in the Hengduan Mountains to climate change
2021
Aim Adaptation, migration and extinction of species is closely associated with climate changes and shape the distribution of biodiversity. The adaptive responses of species in the biodiversity hotspot, the Hengduan Mountains, to climate change remain poorly understood. Location The Hengduan Mountains, southeast of the Qinghai‐Tibet Plateau. Methods The principles of phylogeography and landscape genomics were applied to the endemic species Roscoea humeana in the Hengduan Mountains by genotyping by sequencing data. A total of 5,902 single‐nucleotide polymorphisms were used to analyse the genetic structure/diversity and changes in effective population size over time. Species distribution modelling, principal component analysis and gradient forest analysis were used to explore associations between climate change and genetic variation. Results The population size of R. humeana rapidly increased after the Last Glacial Maximum. The contribution of climate to genetic variation was greater than that of geography. Precipitation during the warmest season played a pivotal role in the adaptation to climate changes. Loci associated with drought tolerance and anti‐ultraviolet radiation were identified, suggesting local adaptation of R. humeana to alpine environments. Main conclusions These results suggest that the current genetic structure and diversity of R. humeana were shaped by Quaternary climate fluctuations and persistence of microrefugia in the Hengduan Mountains. The results further suggest that R. humeana can survive in future refugia within the area where the warmest quarter precipitation is higher than 560 mm, and local adaptation to drought tolerance may be beneficial for its acclimation to future climate changes.
Journal Article
Dual mechanisms of autonomous selfing in Roscoea nepalensis (Zingiberaceae)
by
Shrestha, Mani
,
Burd, Martin
,
Paudel, Babu Ram
in
alpine ginger
,
autonomous selfing
,
pollination
2021
The genus Roscoea, a Himalayan endemic and only alpine member of the predominately tropical family Zingiberaceae, is well-known for possessing elaborate floral traits commonly associated with biotic pollination, and particularly with long-tongued fly pollination. These traits include showy, easily detectable flowers with wide labellum serving as a landing platform for floral visitors, absence of discernible fragrance, presence of nectar as a reward, elongated reproductive organs situated away from the nectar source, and long corolla tube that is compatible with the tongue length of long-tongued insects (Goldblatt and Manning 2000, Cowley 2007).
Journal Article
Coevolutionary elaboration of pollination-related traits in an alpine ginger (Roscoea purpurea) and a tabanid fly in the Nepalese Himalayas
by
Babu Ram Paudel
,
Subodh Adhikari
,
Qing-Jun Li
in
alpine ginger
,
Animals
,
Biological Evolution
2016
Geographical variation in the interacting traits of plant–pollinator mutualism can lead to local adaptive differentiation. We tested Darwin’s hypothesis of reciprocal selection as a key driving force for the evolution of floral traits of an alpine ginger (Roscoea purpurea) and proboscis length of a tabanid fly (Philoliche longirostris).
We documented the pattern of trait variation in R. purpurea and P. longirostris across five populations. At each site, we quantified pollinator-mediated selection on floral display area, inflorescence height and corolla length of R. purpurea by comparing selection gradients for flowers exposed to natural pollination and to supplemental hand pollination. Reciprocal selection between plant and fly was examined at two sites via the relationship between proboscis length and nectar consumption (fly benefit) and corolla length and pollen deposition (plant benefit).
Local corolla tube length was correlated with local fly proboscis length among the five sites. We found strong linear selection imposed by pollinators on corolla tube length at all sites, but there was no consistent relationship of fitness to inflorescence height or floral display area. Selection between corolla length and proboscis length was reciprocal at the two experimental sites examined.
The geographical pattern of trait variation and the evidence of selection is consistent with a mosaic of local, species-specific reciprocal selection acting as the major driving force for the evolution of corolla length of R. purpurea and proboscis length of P. longirostris.
Journal Article
Sexual conflict in protandrous flowers and the evolution of gynodioecy
2021
Sexual interference between male and female function in hermaphrodite plants is reduced by protandry. In environments with insufficient pollinator service, prolongation of male function owing to limited pollen removal could restrict the duration of female function and lower seed production. We provide evidence that this form of sexual conflict has played a role in the spread of females in gynodioecious populations of Cyananthus delavayi in the pollen-limited environments in which this subalpine species occurs. Using field experiments involving artificial pollen removal from the strongly protandrous flowers of hermaphrodites, we demonstrated a trade-off between male- and female-phase duration with no influence on overall floral longevity. Pollen removal at the beginning of anthesis resulted in hermaphrodite seed production matching that of females. In contrast, restricted pollen removal increased the duration of male function at the expense of female function lowering maternal fertility compared to females. This pattern was evident in five populations with females experiencing a twofold average seed fertility advantage compared to hermaphrodites. Gynodioecy often appears to evolve from protandrous ancestors and pollen limitation is widespread in flowering plants suggesting that sexual conflict may play an unappreciated role in the evolution of this form of sexual dimorphism.
Journal Article
An ecological barrier between the Himalayas and the Hengduan Mountains maintains the disjunct distribution of Roscoea
2020
Aim Regional disjunction in mountainous regions is ubiquitous and is closely associated with the evolution of mountain biodiversity. However, the mechanisms of maintaining regional disjunction are often ignored, especially regarding the role of ecological barriers. The aim of this study is to test whether an ecological barrier maintains the regional disjunction of Roscoea between the Himalayas (HIM) and the Hengduan Mountains/Yun‐Gui Plateau (HMY). Location The Himalayas and the Hengduan Mountains/Yun‐Gui Plateau, Asia. Taxon Monocot:Zingiberales:Zingiberaceae:Roscoea. Methods Occurrence data from Roscoea were collected from public databases and field investigations. Environmental niche modelling (ENM) was used to predict the potential distribution of Roscoea during the Last Interglacial (LIG), the Last Glacial Maximum (LGM), the present and the future. An environmental variable difference test, principal component analysis (PCA), discriminant function analysis (DFA) and niche identity test were employed to qualify and quantify the contributions of environmental factors to ecological divergence based on 7 and 26 environmental variables. Results Environmental niche modelling predicted an ecological gap of Roscoea between the HIM and the HMY from the LIG into the future, excluding the LGM. Statistically significant differences were detected in eight unique environmental variables across the Gap, which was mostly related to low temperatures and high moisture levels. The PCA, DFA and niche identity test suggested larger ecological separations among the Gap, the HIM and the HMY based on 26 environmental variables than based on seven variables. Main conclusions All clues point to an ecological barrier that has been maintaining the regional disjunction of Roscoea. This ecological barrier is predicted to be stable under future climate change and may reflect long‐term ecological divergence shaped by the adaptation of Roscoea to divergent habitats. Our study highlights that the effects of specific environmental variables, with possible interactions among multiple ecological factors, being closely related to the ecological barrier.
Journal Article
Pareto-based discrete artificial bee colony algorithm for multi-objective flexible job shop scheduling problems
by
Gao, Kai-Zhou
,
Li, Jun-Qing
,
Pan, Quan-Ke
in
Algorithms
,
CAE) and Design
,
Computer-Aided Engineering (CAD
2011
This paper presents a hybrid Pareto-based discrete artificial bee colony algorithm for solving the multi-objective flexible job shop scheduling problem. In the hybrid algorithm, each solution corresponds to a food source, which composes of two components, i.e., the routing component and the scheduling component. Each component is filled with discrete values. A crossover operator is developed for the employed bees to learn valuable information from each other. An external Pareto archive set is designed to record the non-dominated solutions found so far. A fast Pareto set update function is introduced in the algorithm. Several local search approaches are designed to balance the exploration and exploitation capability of the algorithm. Experimental results on the well-known benchmark instances and comparisons with other recently published algorithms show the efficiency and effectiveness of the proposed algorithm.
Journal Article
Historical biogeography of Acer L. (Sapindaceae): genetic evidence for Out-of-Asia hypothesis with multiple dispersals to North America and Europe
2020
Biogeography is the study of where, when, and how modern species evolved and diversified.
Acer
L. (maple) is one of the most diverse and widespread genera in the Northern Hemisphere. It comprises 124–156 species in the world, approximately 80% species of
Acer
are native in Asia. The current diversity center of
Acer
is not congruent with the distribution of the oldest fossils of the genus. Therefore, we herein used 84 species and subspecies to reconstruct the phylogeny and investigate the biogeographic history of
Acer
using nuclear ITS and three cpDNA fragments (
psbA
-
trnH
spacer,
rpl16
intron, and
trnL
-
trnF
spacer) with maximum likelihood, maximum parsimony, and Bayesian inference methods. The analyses showed that the current diversity center and the origin center of
Acer
is Asia. Additionally, the North American and Euro-Mediterranean species originated from multiple sources from Asia via the North Atlantic Land Bridge and the Bering Land Bridge, and intercontinental migration has mainly occurred since the Miocene. This study not only provides a novel insight of the origin and dispersal routes of
Acer
but also exemplifies how past climatic changes affect the diversification-rates of Northern Hemisphere forest trees.
Journal Article
An effective discrete invasive weed optimization algorithm for lot-streaming flowshop scheduling problems
by
Pei-Yong Duan
,
Jun-Qing, Li
,
Quan-Ke Pan
in
Advanced manufacturing technologies
,
Algorithms
,
Criteria
2018
Lot-streaming scheduling problem has been an active area of research due to its important applications in modern industries. This paper deals with the lot-streaming flowshop problem with sequence-dependent setup times with makespan criterion. An effective discrete invasive weed optimization (DIWO) algorithm is presented with new characteristics. A job permutation representation is utilized and an adapted Nawaz–Enscore–Ham heuristic is employed to ensure an initial weed colony with a certain level of quality. A new spatial dispersal model is designed based on the normal distribution and the property of tangent function to enhance global search. A local search procedure based on the insertion neighborhood is employed to perform local exploitation. The presented DIWO is calibrated by means of the design of experiments approach. A comparative evaluation is carried out with several best performing algorithms based on a total of 280 randomly generated instances. The numerical experiments show that the presented DIWO algorithm produces significantly better results than the competing algorithms and it constitutes a new state-of-the-art solution for the lot-streaming flowshop problem with sequence-dependent setup times with makespan criterion.
Journal Article