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result(s) for
"Kahn, Jacob"
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Pathogenic Role of Epstein–Barr Virus in Lung Cancers
2021
Human oncogenic viruses account for at least 12% of total cancer cases worldwide. Epstein–Barr virus (EBV) is the first identified human oncogenic virus and it alone causes ~200,000 cancer cases and ~1.8% of total cancer-related death annually. Over the past 40 years, increasing lines of evidence have supported a causal link between EBV infection and a subgroup of lung cancers (LCs). In this article, we review the current understanding of the EBV-LC association and the etiological role of EBV in lung carcinogenesis. We also discuss the clinical impact of the knowledge gained from previous research, challenges, and future directions in this field. Given the high clinical relevance of EBV-LC association, there is an urgent need for further investigation on this topic.
Journal Article
Reasoning over Public and Private Data in Retrieval-Based Systems
by
Arora, Simran
,
Fan, Angela
,
Lewis, Patrick
in
Benchmarks
,
Computational linguistics
,
Computerized corpora
2023
Users an organizations are generating ever-increasing amounts of private data from a wide range of sources. Incorporating private context is important to personalize open-domain tasks such as question-answering, fact-checking, and personal assistants. State-of-the-art systems for these tasks explicitly retrieve information that is relevant to an input question from a background corpus before producing an answer. While today’s retrieval systems assume relevant corpora are fully (e.g., publicly) accessible, users are often unable or unwilling to expose their private data to entities hosting public data. We define the
(
) problem involving iterative retrieval over multiple privacy scopes. We introduce a foundational benchmark with which to study
, as no existing benchmark includes data from a private distribution. Our dataset,
, includes data from distinct public and private distributions and is the first textual QA benchmark requiring concurrent retrieval over multiple distributions. Finally, we show that existing retrieval approaches face significant performance degradations when applied to our proposed retrieval setting and investigate approaches with which these tradeoffs can be mitigated. We release the new benchmark and code to reproduce the results.
Journal Article
The Future of Concurrent Automated Coronary Artery Calcium Scoring on Screening Low-Dose Computed Tomography
by
Dirr, McKenzie
,
Waltz, Jeffrey
,
Burt, Jeremy R
in
Artificial intelligence
,
Atherosclerosis
,
Automation
2020
Low-dose computed tomography (LDCT) has been extensively validated for lung cancer screening in selected patient populations. Additionally, the use of gated cardiac CT to assess coronary artery calcium (CAC) burden has been validated to determine a patient's risk for major cardiovascular adverse events. This is typically performed by calculating an Agatston score based on density and overall burden of calcified plaque within the coronary arteries. Patients that qualify for LDCT for lung cancer screening commonly share major risk factors for coronary artery disease and would frequently benefit from an additional gated cardiac CT for the assessment of CAC. Given the widespread use of LDCT for lung cancer screening, we evaluated current literature regarding the use of non-gated chest CT, specifically LDCT, for the detection and grading of coronary artery calcifications. Additionally, given the evolving and increasing use of artificial intelligence (AI) in the interpretation of radiologic studies, current literature for the use of AI in CAC assessment was reviewed. We reviewed primary scientific literature dating up to April 2020 using Pubmed and Google Scholar, with the search terms low dose CT, lung cancer screening, coronary artery calcium, EKG/cardiac gated CT, deep learning, machine learning, and AI. These publications were then independently evaluated by each member of our team. Overall, there was a consensus within these papers that LDCT for lung cancer screening plays a role in the evaluation of CAC. Most studies note the inherent problems with the evaluation of the density of coronary calcifications on LDCT to give an accurate numeric calcium or Agatston score. The current method of evaluating CAC on LDCT involves using a qualitative categorical system (none, mild, moderate, or severe). When performed by cardiac imaging experts, this method broadly correlates with traditional CAC score groups (0, 1 to 100, 101 to 400, and > 400). Furthermore, given the high sensitivity of a properly protocolled LDCT for coronary calcium, a negative study for CAC precludes the need for a dedicated gated CT assessment. However, qualitative methods are not as accurate or reproducible when performed by general radiologists. The implementation of AI in the LDCT screening process has the potential to give a quantifiable and reproducible numeric value to the calcium score, based on whole heart volume scoring of calcium. This more closely aligns with the Agatston score and serves as a better guide for treatment and risk assessment using current guidelines. We conclude that CAC should be assessed on all LDCT performed for lung cancer screening and that a qualitative categorical scoring system should be provided in the impression for each patient. Early studies involving AI for the assessment of CAC are promising, but more extensive studies are needed before a final recommendation for its use can be given. The implementation of an accurate, automated AI CAC assessment tool would improve radiologist compliance and ease of overall workflow. Ultimately, the potential end result would be improved turnaround time, better patient outcomes, and reduced healthcare costs by maximizing preventative care in this high-risk population.
Journal Article
Improving CT-Derived Fractional Flow Reserve Analysis: A Quality Improvement Initiative
by
Cook, Daniel
,
Chamberlin, Jordan H
,
Burt, Jeremy R
in
Cardiology
,
Quality Improvement
,
Radiology
2020
Objectives The aim of this study was to identify factors and quality improvement strategies to improve coronary computed tomography angiography (CCTA) studies referred for fractional flow reserve derived from CT angiography (FFRCT) analysis. Methods Thirty randomly selected CCTAs were analyzed for quality control. A uniform CCTA protocol was implemented by an in-house steering committee, emphasizing the importance of adequate heart rate control and nitroglycerine usage. Sixty additional randomly selected CCTAs were evaluated for quality at multiple time points during intervention, and FFRCT acceptance rate was analyzed at the conclusion. Results Prior to the implementation of this quality improvement program, our overall institution-specific percent acceptance rate was 76.1% for FFRCT compared to the national average of >95%. Post-intervention, this was improved to an average acceptance rate of 90% for FFRCT analysis. Conclusions Establishment and strict adherence to CCTA imaging protocols with appropriate training and adequate buy-in of CT technologists and nurses is a viable way of improving the quality of imaging and subsequent patient care.Objectives The aim of this study was to identify factors and quality improvement strategies to improve coronary computed tomography angiography (CCTA) studies referred for fractional flow reserve derived from CT angiography (FFRCT) analysis. Methods Thirty randomly selected CCTAs were analyzed for quality control. A uniform CCTA protocol was implemented by an in-house steering committee, emphasizing the importance of adequate heart rate control and nitroglycerine usage. Sixty additional randomly selected CCTAs were evaluated for quality at multiple time points during intervention, and FFRCT acceptance rate was analyzed at the conclusion. Results Prior to the implementation of this quality improvement program, our overall institution-specific percent acceptance rate was 76.1% for FFRCT compared to the national average of >95%. Post-intervention, this was improved to an average acceptance rate of 90% for FFRCT analysis. Conclusions Establishment and strict adherence to CCTA imaging protocols with appropriate training and adequate buy-in of CT technologists and nurses is a viable way of improving the quality of imaging and subsequent patient care.
Journal Article
Navigating the thicket of disruptive trading prohibitions in the commodity exchange act and exchanges' disciplinary rules
by
McCracken, Kenneth W
,
Hartman, Stacie R
,
Kahn, Jacob L
in
Algorithms
,
Amendments
,
Commodities
2015
Five or so years ago, discussions of \"disruptive trading\" in the derivatives industry often focused on overly aggressive trading strategies charged by the exchanges as violating \"equitable principles of trade,\" and on a handful of cases brought by the Commodity Futures Trading Commission (CFTC or Commission) alleging market manipulation. The Chicago Mercantile Exchange and the Intercontinental Exchange followed with their own new disruptive trading rules that prohibit conduct beyond that addressed by the amendments to the Commodity Exchange Act (CEA). The market faces a complex of prohibitions in the CEA and exchanges' rules, some of which overlap but not all of which are consistent. This article analyzes the existing rules and accompanying guidance to help market participants better predict when the CFTC or the exchanges may bring charges for \"disruptive\" trading practices. As trading in the derivatives industry has become nearly all-electronic and increasingly algorithmic, so too have the CFTC and exchanges adjusted their enforcement efforts to address new disruptive trading activities.
Journal Article