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result(s) for
"Katainen, Riikka"
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Effect of Cd-containing wood ash on the microflora of coniferous forest humus
by
Karp, Matti
,
Romantschuk, Martin
,
Yrjälä, Kim
in
Cadmium
,
Coniferous forest humus
,
Heavy metal tolerance
2000
The use of wood ash in forestry has been questioned because the cadmium (Cd) concentration of ash, which varies between 1 and 20 mg kg
−1 ash, exceeds the level allowed for fertilizers (3 mg kg
−1) used in agriculture. To investigate the combined and separated effects of Cd and ash on the forest humus microflora, pumice or wood ash, spiked with a water-soluble (CdCl
2) or -insoluble (CdO) form of Cd at three levels (0, 400 and 1000 mg kg
−1), were applied at a fertilization level of 5000 kg ha
−1 in a laboratory microcosm study. The trial consisted of 60 microcosms (five replications per treatment), which were incubated in darkness at +20°C and a constant relative air humidity of 60%. After two months the humus in the microcosms was sampled. Analyses of CO
2 evolution to measure the overall microbial activity and of phospholipid fatty acid (PLFA) pattern to measure microbial community structure were performed. The substrate-use patterns of Biolog EcoPlates were analyzed as a measure of bacterial functionality. Finally the bacterial
3H-thymidine incorporation in the presence of different concentrations of Cd and the number of colony forming units (cfu) of bacteria on nutrient agar in the presence of 0, 5 and 20 mg Cd l
−1 agar were applied to measure Cd tolerance. The use of pumice (pH of humus under the pumice 4.0) did not induce any changes in the above variables compared to two untreated microcosms (humus pH 3.9). Pumice was therefore used to distribute the Cd evenly over the humus surface in order to estimate the possible effect of Cd without ash (pH of humus under the ash 7.0). The application of ash increased the microbial activity, changed the PLFA and substrate-use patterns and increased cfu compared to the humus under pumice. The form and level of Cd in the ash had no further effect on this result. In the humus under pumice the level, but not the form of Cd decreased the microbial activity and changed the PLFA pattern compared to the unspiked pumice. None of the treatments induced bacterial tolerance to Cd. Ash thus protected the humus microflora from the harmful effects of Cd.
Journal Article
Effect of Cd-containing wood ash on the microflora of coniferous forest humus
by
Karp, Matti
,
Romantschuk, Martin
,
Yrjälä, Kim
in
Agar
,
Agronomy. Soil science and plant productions
,
Animal, plant and microbial ecology
2000
Abstract
The use of wood ash in forestry has been questioned because the cadmium (Cd) concentration of ash, which varies between 1 and 20 mg kg−1 ash, exceeds the level allowed for fertilizers (3 mg kg−1) used in agriculture. To investigate the combined and separated effects of Cd and ash on the forest humus microflora, pumice or wood ash, spiked with a water-soluble (CdCl2) or -insoluble (CdO) form of Cd at three levels (0, 400 and 1000 mg kg−1), were applied at a fertilization level of 5000 kg ha−1 in a laboratory microcosm study. The trial consisted of 60 microcosms (five replications per treatment), which were incubated in darkness at +20°C and a constant relative air humidity of 60%. After two months the humus in the microcosms was sampled. Analyses of CO2 evolution to measure the overall microbial activity and of phospholipid fatty acid (PLFA) pattern to measure microbial community structure were performed. The substrate-use patterns of Biolog EcoPlates were analyzed as a measure of bacterial functionality. Finally the bacterial 3H-thymidine incorporation in the presence of different concentrations of Cd and the number of colony forming units (cfu) of bacteria on nutrient agar in the presence of 0, 5 and 20 mg Cd l−1 agar were applied to measure Cd tolerance. The use of pumice (pH of humus under the pumice 4.0) did not induce any changes in the above variables compared to two untreated microcosms (humus pH 3.9). Pumice was therefore used to distribute the Cd evenly over the humus surface in order to estimate the possible effect of Cd without ash (pH of humus under the ash 7.0). The application of ash increased the microbial activity, changed the PLFA and substrate-use patterns and increased cfu compared to the humus under pumice. The form and level of Cd in the ash had no further effect on this result. In the humus under pumice the level, but not the form of Cd decreased the microbial activity and changed the PLFA pattern compared to the unspiked pumice. None of the treatments induced bacterial tolerance to Cd. Ash thus protected the humus microflora from the harmful effects of Cd.
Journal Article
Characterization of Uterine Leiomyomas by Whole-Genome Sequencing
by
Pitkänen, Esa
,
Gentile, Massimiliano
,
Aaltonen, Lauri A
in
Benign
,
Biological and medical sciences
,
Cancer
2013
Some leiomyomas have chromosomal rearrangements implicating chromothripsis, a process involving the formation of complex chromosomal rearrangements. In three instances, tumors obtained from the same woman were documented to be clonally related.
Uterine leiomyomas are benign smooth-muscle tumors with an estimated prevalence of 77% among women of reproductive age in the United States
1
and can cause a range of health problems.
2
According to a nationwide analysis of 518,828 hysterectomies performed in 2005 in the United States, 282,291 of the patients who underwent the procedure (54%) had leiomyomas.
3
Hormonal factors, family history, African ancestry, and obesity increase the risk of leiomyomas.
4
Presentation with multiple tumors is typical (an estimated average is six to seven
1
). Whether leiomyosarcomas develop from leiomyomas or arise independently is not known. Uterine leiomyosarcoma is very rare,
5
and it . . .
Journal Article
Previously reported CCDC26 risk variant and novel germline variants in GALNT13, AR, and MYO10 associated with familial glioma in Finland
2024
Predisposing factors underlying familial aggregation of non-syndromic gliomas are still to be uncovered. Whole-exome sequencing was performed in four Finnish families with brain tumors to identify rare predisposing variants. A total of 417 detected exome variants and 102 previously reported glioma-related variants were further genotyped in 19 Finnish families with brain tumors using targeted sequencing. Rare damaging variants in
GALNT13
,
MYO10
and
AR
were identified. Two families carried either c.553C>T (R185C) or c.1214T>A (L405Q) on
GALNT13
. Variant c.553C>T is located on the substrate-binding site of
GALNT13
.
AR
c.2180G>T (R727L), which is located on a ligand-binding domain of AR, was detected in two families, one of which also carried a
GALNT13
variant.
MYO10
c.4448A>G (N1483S) was detected in two families and c.1511C>T (A504V) variant was detected in one family. Both variants are located on functional domains related to
MYO10
activity in filopodia formation. In addition, affected cases in six families carried a known glioma risk variant rs55705857 in
CCDC26
and low-risk glioma variants. These novel findings indicate polygenic inheritance of familial glioma in Finland and increase our understanding of the genetic contribution to familial glioma susceptibility.
Journal Article