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Aquatic ecosystems play an important role in global methane cycling and many field studies have reported methane supersaturation in the oxic surface mixed layer (SML) of the ocean and in the epilimnion of lakes. The origin of methane formed under oxic condition is hotly debated and several pathways have recently been offered to explain the “methane paradox.” In this context, stable isotope measurements have been applied to constrain methane sources in supersaturated oxygenated waters. Here we present stable carbon isotope signatures for six widespread marine phytoplankton species, three haptophyte algae and three cyanobacteria, incubated under laboratory conditions. The observed isotopic patterns implicate that methane formed by phytoplankton might be clearly distinguished from methane produced by methanogenic archaea. Comparing results from phytoplankton experiments with isotopic data from field measurements, suggests that algal and cyanobacterial populations may contribute substantially to methane formation observed in the SML of oceans and lakes. Plain Language Summary Methane plays an important role in atmospheric chemistry and physics as it contributes to global warming and to the destruction of ozone in the stratosphere. Knowing the sources and sinks of methane in the environment is a prerequisite for understanding the global atmospheric methane cycle but also to better predict future climate change. Measurements of the stable carbon isotope composition of carbon—the ratio between the heavy and light stable isotope of carbon—help to identify methane sources in the environment and to distinguish them from other formation processes. We identified the carbon isotope fingerprint of methane released from phytoplankton including algal and cyanobacterial species. The observed isotope signature improves our understanding of methane cycling in the surface layers of aquatic environments helping us to better estimate methane emissions to the atmosphere. Key Points Stable carbon isotope values of methane emitted from six phytoplankton cultures incubated in the laboratory Isotope fractionation between methane source signature and biomass of widespread algal and cyanobacterial species Isotopic patterns of methane released by phytoplankton may be clearly distinguished from methane formed by methanogenic archaea

When terrestrial plants were identified as producers of the greenhouse gas methane, much discussion and debate ensued not only about their contribution to the global methane budget but also with regard to the validity of the observation itself. Although the phenomenon has now become more accepted for both living and dead plants, the mechanism of methane formation in living plants remains to be elucidated and its precursor compounds to be identified. We made use of stable isotope techniques to verify the in vivo formation of methane, and, in order to identify the carbon precursor, 13C positionally labeled organic compounds were employed. Here we show that the amino acid L-methionine acts as a methane precursor in living plants. Employing 13C-labeled methionine clearly identified the sulfur-bound methyl group of methionine as a carbon precursor of methane released from lavender (Lavandula angustifolia). Furthermore, when lavender plants were stressed physically, methane release rates and the stable carbon isotope values of the emitted methane greatly increased. Our results provide additional support that plants possess a mechanism for methane production and suggest that methionine might play an important role in the formation of methane in living plants, particularly under stress conditions.

Methane plays an important role as a radiatively and chemically active gas in our atmosphere. Until recently, sources of atmospheric methane in the biosphere have been attributed to strictly anaerobic microbial processes during degradation of organic matter. However, a large fraction of methane produced in the anoxic soil layers does not reach the atmosphere due to methanotrophic consumption in the overlaying oxic soil. Although methane fluxes from aerobic soils have been observed, an alternative source other than methanogenesis has not been identified thus far. Here we provide evidence for non-microbial methane formation in soils under oxic conditions. We found that soils release methane upon heating and other environmental factors like ultraviolet irradiation, and drying-rewetting cycles. We suggest that chemical formation of methane during degradation of soil organic matter may represent the missing soil source that is needed to fully understand the methane cycle in aerobic soils. Although the emission fluxes are relatively low when compared to those from wetlands, they may be important in warm and wet regions subjected to ultraviolet radiation. We suggest that this methane source is highly sensitive to global change.

A synthetic DNA fragment containing primer binding sites for the quantification of ten different microbial groups was constructed and evaluated as a reliable enumeration standard for quantitative real-time PCR (qPCR) analyses. This approach has been exemplary verified for the quantification of several methanogenic orders and families in a series of samples drawn from a mesophilic biogas plant. Furthermore, the total amounts of bacteria as well as the number of sulfate-reducing and propionic acid bacteria as potential methanogenic interaction partners were successfully determined. The obtained results indicated a highly dynamic microbial community structure which was distinctly affected by the organic loading rate, the substrate selection, and the amount of free volatile fatty acids in the fermenter. Methanosarcinales was the most predominant methanogenic order during the 3 months of observation despite fluctuating process conditions. During all trials, the modified quantification standard indicated a maximum of reproducibility and efficiency, enabling this method to open up a wide range of novel application options.

Volatile halogenated organic compounds (VHOC) play an important role in atmospheric chemical processes—contributing, for example, to stratospheric ozone depletion 1 , 2 , 3 , 4 . For anthropogenic VHOC whose sources are well known 5 , the global atmospheric input can be estimated from industrial production data. Halogenated compounds of natural origin can also contribute significantly to the levels of VHOC in the atmosphere 6 . The oceans have been implicated as one of the main natural sources 7 , 8 , 9 , 10 , where organisms such as macroalgae and microalgae can release large quantities of VHOC to the atmosphere 11 , 12 . Some terrestrial sources have also been identified, such as wood-rotting fungi 13 , biomass burning 14 and volcanic emissions 15 . Here we report the identification of a different terrestrial source of naturally occurring VHOC. We find that, in soils and sediments, halide ions can be alkylated during the oxidation of organic matter by an electron acceptor such as Fe( III ): sunlight or microbial mediation are not required for these reactions. When the available halide ion is chloride, the reaction products are CH 3 Cl, C 2 H 5 Cl, C 3 H 7 Cl and C 4 H 9 Cl. (The corresponding alkyl bromides or alkyl iodides are produced when bromide or iodide are present.) Such abiotic processes could make a significant contribution to the budget of the important atmospheric compounds CH 3 Cl, CH 3 Br and CH 3 I.

Methane (CH4) production within the oceanic mixed layer is a widespread phenomenon, but the underlying mechanisms are still under debate. Marine algae might contribute to the observed CH4 oversaturation in oxic waters, but so far direct evidence for CH4 production by marine algae has only been provided for the coccolithophore Emiliania huxleyi. In the present study we investigated, next to E. huxleyi, other widespread haptophytes, i.e., Phaeocystis globosa and Chrysochromulina sp. We performed CH4 production and stable carbon isotope measurements and provide unambiguous evidence that all three investigated marine algae are involved in the production of CH4 under oxic conditions. Rates ranged from 1.9±0.6 to 3.1±0.4 µg of CH4 per gram of POC (particulate organic carbon) per day, with Chrysochromulina sp. and E. huxleyi showing the lowest and highest rates, respectively. Cellular CH4 production rates ranged from 16.8±6.5 (P. globosa) to 62.3±6.4 ag CH4 cell−1 d−1 (E. huxleyi; ag = 10−18 g). In cultures that were treated with 13C-labeled hydrogen carbonate, δ13CH4 values increased with incubation time, resulting from the conversion of 13C–hydrogen carbonate to 13CH4. The addition of 13C-labeled dimethyl sulfide, dimethyl sulfoxide, and methionine sulfoxide – known algal metabolites that are ubiquitous in marine surface layers – resulted in the occurrence of 13C-enriched CH4 in cultures of E. huxleyi, clearly indicating that methylated sulfur compounds are also precursors of CH4. By comparing the algal CH4 production rates from our laboratory experiments with results previously reported in two field studies of the Pacific Ocean and the Baltic Sea, we might conclude that algae-mediated CH4 release is contributing to CH4 oversaturation in oxic waters. Therefore, we propose that haptophyte mediated CH4 production could be a common and important process in marine surface waters.

Methane (CH4), an important greenhouse gas that affects radiation balance and consequently the earth's climate, still has uncertainties in its sinks and sources. The world's oceans are considered to be a source of CH4 to the atmosphere, although the biogeochemical processes involved in its formation are not fully understood. Several recent studies provided strong evidence of CH4 production in oxic marine and freshwaters, but its source is still a topic of debate. Studies of CH4 dynamics in surface waters of oceans and large lakes have concluded that pelagic CH4 supersaturation cannot be sustained either by lateral inputs from littoral or benthic inputs alone. However, regional and temporal oversaturation of surface waters occurs frequently. This comprises the observation of a CH4 oversaturating state within the surface mixed layer, sometimes also termed the \"oceanic methane paradox\". In this study we considered marine algae as a possible direct source of CH4. Therefore, the coccolithophore Emiliania huxleyi was grown under controlled laboratory conditions and supplemented with two 13C-labeled carbon substrates, namely bicarbonate and a position-specific 13C-labeled methionine (R-S-13CH3). The CH4 production was 0.7 µg particular organic carbon (POC) g−1 d−1, or 30 ng g−1 POC h−1. After supplementation of the cultures with the 13C-labeled substrate, the isotope label was observed in headspace CH4. Moreover, the absence of methanogenic archaea within the algal culture and the oxic conditions during CH4 formation suggest that the widespread marine algae Emiliania huxleyi might contribute to the observed spatially and temporally restricted CH4 oversaturation in ocean surface waters.

Stable hydrogen and carbon isotope ratios of wood lignin methoxy groups (δ13CLM and δ2HLM values) have been shown to be reliable proxies of past temperature variations. Previous studies showed that δ2HLM values even work in temperate environments where classical tree-ring width and maximum latewood density measurements are less successful for climate reconstructions. Here, we analyse the annually resolved δ13CLM values from 1916–2015 of four beech trees (Fagus sylvatica) from a temperate site near Hohenpeißenberg in southern Germany and compare these data with regional- to continental-scale climate observations. Initial δ13CLM values were corrected for the Suess effect (a decrease of δ13C in atmospheric CO2) and physiological tree responses to increasing atmospheric CO2 concentrations considering a range of published discrimination factors. The calibration of δ13CLM chronologies against instrumental data reveals the highest correlations with regional summer (r=0.68) and mean annual temperatures (r=0.66), as well as previous-year September to current-year August temperatures (r=0.61), all calculated from 1916–2015 and reaching p<0.001. Additional calibration trials using detrended δ13CLM values and climate data (to constrain effects of autocorrelation on significance levels) returned rsummer=0.46 (p<0.001), rannual=0.25 (p<0.05) and rprev.September-August=0.18 (p>0.05). The new δ13CLM chronologies were finally compared with the previously produced δ2HLM values of the same trees in order to evaluate the additional gain of assessing past climate variability using a dual-isotope approach. Compared to δ13CLM, δ2HLM values correlate substantially more strongly with large-scale temperatures averaged over western Europe (rprev.September-August=0.69), whereas only weak and mainly insignificant correlations are obtained between precipitation and both isotope chronologies (δ13CLM and δ2HLM values). Our results indicate the great potential of using δ13CLM values from temperate environments as a proxy for local temperatures and, in combination with δ2HLM values, to assess regional- to sub-continental scale temperature patterns.

Natural natural gas plants The unexpectedly high levels of the green-house gas methane over tropical forests, and the recent decline in the atmospheric growth rate of methane concentrations, cannot be readily explained with the accepted global methane budget. Now a genuinely surprising discovery provides a possible explanation for these phenomena, and may have implications for modelling past and future climates. It was thought that methane formed naturally only in anaerobic conditions, in marshes for instance. In fact living plants, as well as plant litter, emit methane to the atmosphere under oxic conditions. This additional source of methane could account for 10–30% of the annual methane source strength and has been overlooked in previous studies Methane is an important greenhouse gas and its atmospheric concentration has almost tripled since pre-industrial times 1 , 2 . It plays a central role in atmospheric oxidation chemistry and affects stratospheric ozone and water vapour levels. Most of the methane from natural sources in Earth's atmosphere is thought to originate from biological processes in anoxic environments 2 . Here we demonstrate using stable carbon isotopes that methane is readily formed in situ in terrestrial plants under oxic conditions by a hitherto unrecognized process. Significant methane emissions from both intact plants and detached leaves were observed during incubation experiments in the laboratory and in the field. If our measurements are typical for short-lived biomass and scaled on a global basis, we estimate a methane source strength of 62–236 Tg yr -1 for living plants and 1–7 Tg yr -1 for plant litter (1 Tg = 10 12  g). We suggest that this newly identified source may have important implications for the global methane budget and may call for a reconsideration of the role of natural methane sources in past climate change.

Methane (CH4) is the most abundant organic compound in the atmosphere and is emitted from many biotic and abiotic sources. Recent studies have shown that CH4 production occurs under aerobic conditions in eukaryotes, such as plants, animals, algae, and saprotrophic fungi. Saprotrophic fungi play an important role in nutrient recycling in terrestrial ecosystems via the decomposition of plant litter. Although CH4 production by saprotrophic fungi has been reported, no data on the stable carbon isotope values of the emitted CH4 (δ13C-CH4 values) are currently available. In this study, we measured the δ13C values of CH4 and carbon dioxide (δ13C-CO2 values) emitted by two saprotrophic fungi, Pleurotus sapidus (oyster mushroom) and Laetiporus sulphureus (sulphur shelf), cultivated on three different substrates, pine wood (Pinus sylvestris), grass (mixture of Lolium perenne, Poa pratensis, and Festuca rubra), and corn (Zea mays), which reflect both C3 and C4 plants with distinguished bulk δ13C values. Applying Keeling plots, we found that the δ13C source values of CH4 emitted from fungi cover a wide range from −40 to −69 mUr depending on the growth substrate and fungal species. Whilst little apparent carbon isotopic fractionation (in the range from −0.3 to 4.6 mUr) was calculated for the δ13C values of CO2 released from P. sapidus and L. sulphureus relative to the bulk δ13C values of the growth substrates, much larger carbon isotopic fractionations (ranging from −22 to −42 mUr) were observed for the formation of CH4. Although the two fungal species showed similar δ13CH4 source values when grown on pine wood, δ13CH4 source values differed substantially between the two fungal species when they were grown on grass or corn. We found that the source values of δ13CH4 emitted by saprotrophic fungi are highly dependent on the fungal species and the metabolized substrate. The source values of δ13CH4 cover a broad range and overlap with values reported for methanogenic archaea, the thermogenic degradation of organic matter, and other eukaryotes.