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The Southern Ocean plays a critical role in regulating global climate as a major sink for atmospheric carbon dioxide (CO2), and in global ocean biogeochemistry by supplying nutrients to the global thermocline, thereby influencing global primary production and carbon export. Biogeochemical processes within the Southern Ocean regulate regional primary production and biological carbon uptake, primarily through iron supply, and support ecosystem functioning over a range of spatial and temporal scales. Here we assimilate existing knowledge and present new data to examine the biogeochemical cycles of iron, carbon and major nutrients, their key drivers and their responses to, and roles in, contemporary climate and environmental change. Projected increases in iron supply, coupled with increases in light availability to phytoplankton through increased near-surface stratification and longer ice-free periods, are very likely to increase primary production and carbon export around Antarctica. Biological carbon uptake is likely to increase for the Southern Ocean as a whole, whilst there is greater uncertainty around projections of primary production in the Sub-Antarctic and basin-wide changes in phytoplankton species composition, as well as their biogeochemical consequences. Phytoplankton, zooplankton, higher trophic level organisms and microbial communities are strongly influenced by Southern Ocean biogeochemistry, in particular through nutrient supply and ocean acidification. In turn, these organisms exert important controls on biogeochemistry through carbon storage and export, nutrient recycling and redistribution, and benthic-pelagic coupling. The key processes described in this paper are summarised in the graphical abstract. Climate-mediated changes in Southern Ocean biogeochemistry over the coming decades are very likely to impact primary production, sea-air CO2 exchange and ecosystem functioning within and beyond this vast and critically important ocean region.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Dense, cold waters formed on Antarctic continental shelves descend along the Antarctic continental margin, where they mix with other Southern Ocean waters to form Antarctic Bottom Water (AABW). AABW then spreads into the deepest parts of all major ocean basins, isolating heat and carbon from the atmosphere for centuries. Despite AABW’s key role in regulating Earth’s climate on long time scales and in recording Southern Ocean conditions, AABW remains poorly observed. This lack of observational data is mostly due to two factors. First, AABW originates on the Antarctic continental shelf and slope where in situ measurements are limited and ocean observations by satellites are hampered by persistent sea ice cover and long periods of darkness in winter. Second, north of the Antarctic continental slope, AABW is found below approximately 2 km depth, where in situ observations are also scarce and satellites cannot provide direct measurements. Here, we review progress made during the past decades in observing AABW. We describe 1) long-term monitoring obtained by moorings, by ship-based surveys, and beneath ice shelves through bore holes; 2) the recent development of autonomous observing tools in coastal Antarctic and deep ocean systems; and 3) alternative approaches including data assimilation models and satellite-derived proxies. The variety of approaches is beginning to transform our understanding of AABW, including its formation processes, temporal variability, and contribution to the lower limb of the global ocean meridional overturning circulation. In particular, these observations highlight the key role played by winds, sea ice, and the Antarctic Ice Sheet in AABW-related processes. We conclude by discussing future avenues for observing and understanding AABW, impressing the need for a sustained and coordinated observing system.

The Northern Antarctic Peninsula (NAP), located in West Antarctica, is amongst the most impacted regions worldwide by recent warming events. Its vulnerability to climate change has already led to an accumulation of severe changes along its ecosystems. This work reviews the current findings on impacts observed in phytoplankton communities occurring in the NAP, with a focus on its causes, consequences, and the potential research priorities for an integrated comprehension of the physical-biological coupling and climate perspective. Evident changes in phytoplankton biomass, community composition and size structure, as well as potential bottom-up impacts to the ecosystem are discussed. Surface wind, sea ice and meltwater dynamics, as the main drivers of the upper layer structure, are identified as the leading factors shaping phytoplankton. Short- and long-term scenarios are suggested for phytoplankton communities in the NAP, both indicating a future increase of the importance of small flagellates at the expense of diatoms, with potential devastating impacts for the ecosystem. Five main research gaps in the current understanding of the phytoplankton response to climate change in the region are identified: i) anthropogenic signal has yet to be disentangled from natural climate variability; ii) the influence of small-scale ocean circulation processes on phytoplankton is poorly understood; iii) the potential consequences to regional food webs must be clarified; iv) the magnitude and risk of potential changes in phytoplankton composition is relatively unknown; and v) a better understanding of phytoplankton physiological responses to changes in the environmental conditions is required. Future research directions, along with specific suggestions on how to follow them, are equally suggested. Overall, while the current knowledge has shed light on the response of phytoplankton to climate change, in order to truly comprehend and predict changes in phytoplankton communities there must be a robust collaboration effort integrating both Antarctic research programs and the whole scientific community under a common research framework.

Open ocean deep convection is a common source of error in the representation of Antarctic Bottom Water (AABW) formation in ocean general circulation models. Although those events are well described in non-assimilatory ocean simulations, the recent appearance of a massive open ocean polynya in the Estimating the Circulation and Climate of the Ocean Phase II reanalysis product (ECCO2) raises questions on which mechanisms are responsible for those spurious events and whether they are also present in other state-of-the-art assimilatory reanalysis products. To investigate this issue, we evaluate how three recently released high-resolution ocean reanalysis products form AABW in their simulations. We found that two of the products create AABW by open ocean deep convection events in the Weddell Sea that are triggered by the interaction of sea ice with the Warm Deep Water, which shows that the assimilation of sea ice is not enough to avoid the appearance of open ocean polynyas. The third reanalysis, My Ocean University Reading UR025.4, creates AABW using a rather dynamically accurate mechanism. The UR025.4 product depicts both continental shelf convection and the export of Dense Shelf Water to the open ocean. Although the accuracy of the AABW formation in this reanalysis product represents an advancement in the representation of the Southern Ocean dynamics, the differences between the real and simulated processes suggest that substantial improvements in the ocean reanalysis products are still needed to accurately represent AABW formation.

Diatoms are considered the main base of the Southern Ocean food web as they are responsible for more than 85% of its annual primary production and play a crucial role in the Antarctic trophic structure and in the biogeochemical cycles. Within this context, an intense diatom bloom reaching > 45 mg m−3 of chlorophyll a was registered in the Northern Antarctic Peninsula (NAP) during a late summer study in February 2016. Given that nutrient concentrations and grazing activities were not identified here as limiting factors on the bloom development, the aim of this study was to evaluate the effect of water column structure (stability and upper mixed layer depth) on the phytoplankton biomass and composition in the NAP. The diatom bloom, mainly composed by the large centric Odontella weissflogii (mostly > 70 μm in length), was associated with a local ocean carbon dioxide uptake that reached values greater than −60 mmol m−2 d−1. We hypothesize that the presence of a vertically large water column stability barrier, just below the pycnocline, was the main driver allowing for the development of the intense diatom bloom, particularly in the Gerlache Strait. Contrarily, a shift from diatoms to dinoflagellates (mainly Gymnodiniales < 20 μm) was observed associated with conditions of a highly stable thin layer. The results suggest that a large fraction of this intense diatom bloom is in fast sinking process, associated with low grazing pressure, showing a crucial role of diatoms for the efficiency of the biological carbon pump in this region.

The Weddell Sea is one of the key regions of the Southern Ocean with respect to climate as most of the Antarctic Bottom Water (AABW) that occupies the world ocean deepest layers is likely to originate from this region. This study applies the Optimum Multiparameter water mass analysis to the Weddell deep waters in order to investigate their distribution and variability. The dataset used is based on the WOCE repeat sections in the area (SR04 and A12) from 1984 to 1998. The mean water mass distribution is consistent with previous knowledge of the region, along with high interannual variability. Regarding the temporal variability, it seems that the years of maximum Weddell Sea Deep Water (WSDW) contribution correspond to the lowest levels of Weddell Sea Bottom Water (WSBW), and vice versa. In order to identify possible forcing mechanisms for such variability, the water mass temporal anomalies were compared with oceanic and atmospheric modes of variability in that region such as the Southern Annular Mode (SAM). An apparent correlation between the SAM index temporal gradients and WSBW anomalies indicate that the Weddell Sea export of dense waters to the world ocean may be linked to that index on several time scales.

We show an annual overview of the sea-air CO 2 exchanges and primary drivers in the Gerlache Strait, a hotspot for climate change that is ecologically important in the northern Antarctic Peninsula. In autumn and winter, episodic upwelling events increase the remineralized carbon in the sea surface, leading the region to act as a moderate or strong CO 2 source to the atmosphere of up to 40 mmol m –2  day –1 . During summer and late spring, photosynthesis decreases the CO 2 partial pressure in the surface seawater, enhancing ocean CO 2 uptake, which reaches values higher than − 40 mmol m –2  day –1 . Thus, autumn/winter CO 2 outgassing is nearly balanced by an only 4-month period of intense ocean CO 2 ingassing during summer/spring. Hence, the estimated annual net sea-air CO 2 flux from 2002 to 2017 was 1.24 ± 4.33 mmol m –2  day –1 , opposing the common CO 2 sink behaviour observed in other coastal regions around Antarctica. The main drivers of changes in the surface CO 2 system in this region were total dissolved inorganic carbon and total alkalinity, revealing dominant influences of both physical and biological processes. These findings demonstrate the importance of Antarctica coastal zones as summer carbon sinks and emphasize the need to better understand local/regional seasonal sensitivity to the net CO 2 flux effect on the Southern Ocean carbon cycle, especially considering the impacts caused by climate change.

We examine Weddell Sea deep water mass distributions with respect to the results from three different model runs using the oceanic component of the National Center for Atmospheric Research Community Climate System Model (NCAR-CCSM). One run is inter-annually forced by corrected NCAR/NCEP fluxes, while the other two are forced with the annual cycle obtained from the same climatology. One of the latter runs includes an interactive sea-ice model. Optimum Multiparameter analysis is applied to separate the deep water masses in the Greenwich Meridian section (into the Weddell Sea only) to measure the degree of realism obtained in the simulations. First, we describe the distribution of the simulated deep water masses using observed water type indices. Since the observed indices do not provide an acceptable representation of the Weddell Sea deep water masses as expected, they are specifically adjusted for each simulation. Differences among the water masses’ representations in the three simulations are quantified through their root-mean-square differences. Results point out the need for better representation (and inclusion) of ice-related processes in order to improve the oceanic characteristics and variability of dense Southern Ocean water masses in the outputs of the NCAR-CCSM model, and probably in other ocean and climate models.

The structure of the phytoplankton community is strongly influenced by environmental variables linked with variations in sea–air CO2 net fluxes (FCO2). However, compared to physical parameters, the relationship between phytoplankton and CO2 dynamics has been largely unexplored. The complex interplay between CO2 uptake by the coastal ocean and the dominance of different phytoplankton groups was investigated in the southwestern South Atlantic Ocean (20°S–50°S), mostly during spring. We addressed this challenge by synoptically characterizing the study region for both FCO2 and phytoplankton pigment composition. Thus, we discern the phytoplankton biomass in different groups by pigment composition information obtained through high-performance liquid chromatography (HPLC), with further determination of phytoplankton groups using the CHEMTAX approach. The effects of biology and temperature on sea surface CO2 partial pressure were evaluated, and phytoplankton groups were linked to CO2 exchanges. The results highlight the importance of biology on the modulation of FCO2 in the study region. Hence, we delimited the southwestern South Atlantic continental shelf into two distinct biogeochemical regions divided by a transitional zone (~ 35°S) according to the distribution patterns of both phytoplankton and CO2 behavior. North of 35°S, higher sea surface temperature and salinity, combined with lower phytoplankton biomass, were associated with a domination of generally very small cyanobacteria and CO2-outgassing behavior. In the transitional zone (35°S–40°S), changes in both salinity and temperature promoted a shift in dominant phytoplankton groups and, consequently, changed the ocean surface behavior from a CO2-outgassing zone to an ingassing zone. Farther south, between 40°S and 50°S, the higher phytoplankton biomass produced by diatoms, associated with lower values of both sea surface temperature and salinity, was positively related to stronger CO2-uptake rates. This link between the shifts in phytoplankton community structure and CO2-uptake rates is a potential target to shed light on long-term CO2-flux modulation in the southwestern South Atlantic Ocean. Thus, the main findings here can be relevant for predicting the potential consequences of future climate-driven changes in ocean CO2 uptake, especially considering the warming ocean conditions associated with a shift toward smaller phytoplankton cells.