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"Khan, Naveed"
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An update on Acanthamoeba keratitis: diagnosis, pathogenesis and treatment
by
Walochnik, Julia
,
Khan, Naveed A.
,
Lorenzo-Morales, Jacob
in
Acanthamoeba
,
Acanthamoeba - enzymology
,
Acanthamoeba - genetics
2015
Free-living amoebae of the genus Acanthamoeba are causal agents of a severe sight-threatening infection of the cornea known as Acanthamoeba keratitis. Moreover, the number of reported cases worldwide is increasing year after year, mostly in contact lens wearers, although cases have also been reported in non-contact lens wearers. Interestingly, Acanthamoeba keratitis has remained significant, despite our advances in antimicrobial chemotherapy and supportive care. In part, this is due to an incomplete understanding of the pathogenesis and pathophysiology of the disease, diagnostic delays and problems associated with chemotherapeutic interventions. In view of the devastating nature of this disease, here we present our current understanding of Acanthamoeba keratitis and molecular mechanisms associated with the disease, as well as virulence traits of Acanthamoeba that may be potential targets for improved diagnosis, therapeutic interventions and/or for the development of preventative measures. Novel molecular approaches such as proteomics, RNAi and a consensus in the diagnostic approaches for a suspected case of Acanthamoeba keratitis are proposed and reviewed based on data which have been compiled after years of working on this amoebic organism using many different techniques and listening to many experts in this field at conferences, workshops and international meetings. Altogether, this review may serve as the milestone for developing an effective solution for the prevention, control and treatment of Acanthamoeba infections.
Les amibes à vie libre du genre Acanthamoeba sont les agents causant une infection sévère de la cornée, dangereuse pour la vue, appelée kératite à Acanthamoeba. De plus, le nombre de cas signalés à travers le monde est en augmentation année après année, principalement chez les porteurs de lentilles de contact, bien que des cas de kératite à Acanthamoeba aient également été signalés chez les non-porteurs de lentilles. Fait intéressant, la kératite à Acanthamoeba est restée significative, en dépit de nos progrès dans la chimiothérapie antimicrobienne et les soins de soutien. En partie, cela est dû à une compréhension incomplète de la pathogenèse et la physiopathologie de la maladie, aux retards du diagnostic et aux problèmes associés aux interventions chimiothérapeutiques. Compte tenu de la nature dévastatrice de cette maladie, nous présentons ici notre compréhension actuelle de la kératite à Acanthamoeba et des mécanismes moléculaires associés à la maladie, ainsi que les traits de virulence de Acanthamoeba qui peuvent être des cibles potentielles pour l’amélioration du diagnostic, les interventions thérapeutiques et/ou pour l’élaboration de mesures préventives. Des approches moléculaires comme la protéomique, l’ARNi et des approches consensuelles de diagnostic pour un cas suspecté de kératite à Acanthamoeba sont proposées et examinées sur la base des données qui ont été compilées après des années de travail sur cet organisme amibien, utilisant de nombreuses techniques différentes et l’écoute de nombreux experts sur ce domaine à des conférences, ateliers et réunions internationales. Au total, cette étude peut servir de jalon pour développer une solution efficace pour la prévention, le contrôle et le traitement des infections à Acanthamoeba.
Journal Article
Biology and pathogenesis of Acanthamoeba
by
Ahmed Khan, Naveed
,
Siddiqui, Ruqaiyyah
in
Acanthamoeba
,
Acanthamoeba - pathogenicity
,
Acanthamoeba - physiology
2012
Acanthamoeba is a free-living protist pathogen, capable of causing a blinding keratitis and fatal granulomatous encephalitis. The factors that contribute to Acanthamoeba infections include parasite biology, genetic diversity, environmental spread and host susceptibility, and are highlighted together with potential therapeutic and preventative measures. The use of Acanthamoeba in the study of cellular differentiation mechanisms, motility and phagocytosis, bacterial pathogenesis and evolutionary processes makes it an attractive model organism. There is a significant emphasis on Acanthamoeba as a Trojan horse of other microbes including viral, bacterial, protists and yeast pathogens.
Journal Article
Primary Amoebic Meningoencephalitis Caused by Naegleria fowleri: An Old Enemy Presenting New Challenges
by
Siddiqui, Ruqaiyyah
,
Khan, Naveed Ahmed
in
Amebiasis - etiology
,
Amebiasis - therapy
,
Anti-infective agents
2014
First discovered in 1899, Naegleria fowleri is a protist pathogen, known to infect the central nervous system and produce primary amoebic meningoencephalitis. The most distressing aspect is that the fatality rate has remained more than 95%, despite our advances in antimicrobial chemotherapy and supportive care. Although rare worldwide, most cases have been reported in the United States, Australia, and Europe (France). A large number of cases in developing countries go unnoticed. In particular, religious, recreational, and cultural practices such as ritual ablution and/or purifications, Ayurveda, and the use of neti pots for nasal irrigation can contribute to this devastating infection. With increasing water scarcity and public reliance on water storage, here we debate the need for increased awareness of primary amoebic meningoencephalitis and the associated risk factors, particularly in developing countries.
Journal Article
Dynamics of two-step reversible enzymatic reaction under fractional derivative with Mittag-Leffler Kernel
by
Khan, Ilyas
,
Khan, Maryam
,
Nisar, Kottakkaran Sooppy
in
Algorithms
,
Analysis
,
Biology and Life Sciences
2023
Chemical kinetics is a branch of chemistry that is founded on understanding chemical reaction rates. Chemical kinetics relates many aspects of cosmology, geology, and even in some cases of, psychology. There is a need for mathematical modelling of these chemical reactions. Therefore, the present research is based on chemical kinetics-based modelling and dynamics of enzyme processes. This research looks at the two-step substrate-enzyme reversible response. In the two step-reversible reactions, substrate combines with enzymes which is further converted into products with two steps. The model is displayed through the flow chart, which is then transformed into ODEs. The Atangana-Baleanu time-fractional operator and the Mittag-Leffler kernel are used to convert the original set of highly nonlinear coupled integer order ordinary differential equations into a fractional-order model. Additionally, it is shown that the solution to the investigated fractional model is unique, limited, and may be represented by its response velocity. A numerical scheme, also known as the Atangana-Toufik method, based on Newton polynomial interpolation technique via MATLAB software, is adopted to find the graphical results. The dynamics of reaction against different reaction rates are presented through various figures. It is observed that the forward reaction rates increase the reaction speed while backward reaction rates reduce it.
Journal Article
Impact of Feature Selection Algorithm on Speech Emotion Recognition Using Deep Convolutional Neural Network
2020
Speech emotion recognition (SER) plays a significant role in human–machine interaction. Emotion recognition from speech and its precise classification is a challenging task because a machine is unable to understand its context. For an accurate emotion classification, emotionally relevant features must be extracted from the speech data. Traditionally, handcrafted features were used for emotional classification from speech signals; however, they are not efficient enough to accurately depict the emotional states of the speaker. In this study, the benefits of a deep convolutional neural network (DCNN) for SER are explored. For this purpose, a pretrained network is used to extract features from state-of-the-art speech emotional datasets. Subsequently, a correlation-based feature selection technique is applied to the extracted features to select the most appropriate and discriminative features for SER. For the classification of emotions, we utilize support vector machines, random forests, the k-nearest neighbors algorithm, and neural network classifiers. Experiments are performed for speaker-dependent and speaker-independent SER using four publicly available datasets: the Berlin Dataset of Emotional Speech (Emo-DB), Surrey Audio Visual Expressed Emotion (SAVEE), Interactive Emotional Dyadic Motion Capture (IEMOCAP), and the Ryerson Audio Visual Dataset of Emotional Speech and Song (RAVDESS). Our proposed method achieves an accuracy of 95.10% for Emo-DB, 82.10% for SAVEE, 83.80% for IEMOCAP, and 81.30% for RAVDESS, for speaker-dependent SER experiments. Moreover, our method yields the best results for speaker-independent SER with existing handcrafted features-based SER approaches.
Journal Article
MHD flow of time-fractional Casson nanofluid using generalized Fourier and Fick's laws over an inclined channel with applications of gold nanoparticles
2022
Gold nanoparticles are commonly used as a tracer in laboratories. They are biocompatible and can transport heat energy to tumor cells via a variety of clinical techniques. As cancer cells are tiny, properly sized nanoparticles were introduced into the circulation for invasion. As a result, gold nanoparticles are highly effective. Therefore, the current research investigates the magnetohydrodynamic free convection flow of Casson nanofluid in an inclined channel. The blood is considered as a base fluid, and gold nanoparticles are assumed to be uniformly dispersed in it. The above flow regime is formulated in terms of partial differential equations. The system of derived equations with imposed boundary conditions is non-dimensionalized using appropriate dimensionless variables. Fourier's and Fick's laws are used to fractionalize the classical dimensionless model. The Laplace and Fourier sine transformations with a new transformation are used for the closed-form solutions of the considered problem. Finally, the results are expressed in terms of a specific function known as the Mittag-Leffler function. Various figures and tables present the effect of various physical parameters on the achieved results. Graphical results conclude that the fractional Casson fluid model described a more realistic aspect of the fluid velocity profile, temperature, and concentration profile than the classical Casson fluid model. The heat transfer rate and Sherwood number are calculated and presented in tabular form. It is worth noting that increasing the volume percentage of gold nanoparticles from 0 to 0.04 percent resulted in an increase of up to 3.825% in the heat transfer rate.
Journal Article
Acanthamoeba : biology and increasing importance in human health
2006
Abstract
Acanthamoeba
is an opportunistic protozoan that is widely distributed in the environment and is well recognized to produce serious human infections, including a blinding keratitis and a fatal encephalitis. This review presents our current understanding of the burden of
Acanthamoeba
infections on human health, their pathogenesis and pathophysiology, and molecular mechanisms associated with the disease, as well as virulence traits of
Acanthamoeba
that may be targets for therapeutic interventions and/or the development of preventative measures.
Journal Article
Fractal fractional analysis of non linear electro osmotic flow with cadmium telluride nanoparticles
by
Murtaza, Saqib
,
Kumam, Poom
,
Khan, Naveed
in
639/705
,
639/925
,
Humanities and Social Sciences
2022
Numerical simulations of non-linear Casson nanofluid flow were carried out in a microchannel using the fractal-fractional flow model. The nano-liquid is prepared by dispersing Cadmium Telluride nanoparticles in common engine oil. Using relative constitutive equations, the system of mathematical governing equations has been formulated along with initial and boundary conditions. Dimensionless variables have been used to obtain the non-dimensional form of the governing equations. The fractal-fractional model has been obtained by employing the fractal-fractional operator of the exponential kernel. As the exact solution of the non-linear fractal-fractional model is very tough to find, therefore the formulated model has been solved numerically via the Crank-Nicolson scheme. Various plots are generated for the inserted parameters. From the analysis, it has been observed that a greater magnitude of the electro-kinetic parameter slows down the fluid's velocity. It is also worth noting that the fractional and classical models can also be derived from the fractal-fractional model by taking the parameters tend to zero. From the analysis, it is also observed that in response to 0.04 volume fraction of cadmium telluride nanoparticles, the rate of heat transfer (Nusselt number) and rate of mass transfer (Sherwood number) increased by 15.27% and 2.07% respectively.
Journal Article
A time fractional model of a Maxwell nanofluid through a channel flow with applications in grease
2023
Several scientists are interested in recent developments in nanotechnology and nanoscience. Grease is an essential component of many machines and engines because it helps keep them cool by reducing friction between their various elements. In sealed life applications including centralized lubrication systems, electrical motors, bearings, logging and mining machinery, truck wheel hubs, construction, landscaping, and gearboxes, greases are also utilized. Nanoparticles are added to convectional grease to improve its cooling and lubricating properties. More specifically, the current study goal is to investigate open channel flow while taking grease into account as a Maxwell fluid with
MoS
2
nanoparticles suspended in it. The Caputo-Fabrizio time-fractional derivative is used to convert the issue from a linked classical order PDE to a local fractional model. To determine the precise solutions for the velocity, temperature, and concentration distributions, two integral transform techniques the finite Fourier sine and the Laplace transform technique are jointly utilized. The resultant answers are physically explored and displayed using various graphs. It is important to note that the fractional model, which offers a variety of integral curves, more accurately depicts the flow behavior than the classical model. Skin friction, the Nusselt number, and the Sherwood number are engineering-related numbers that are quantitatively determined and displayed in tabular form. It is determined that adding
MoS
2
nanoparticles to grease causes a 19.1146% increase in heat transmission and a 2.5122% decrease in mass transfer. The results obtained in this work are compared with published literature for the accuracy purpose.
Journal Article