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result(s) for
"Kim, Nari"
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Interplay between membranes and biomolecular condensates in the regulation of membrane-associated cellular processes
2024
Liquid‒liquid phase separation (LLPS) has emerged as a key mechanism for organizing cellular spaces independent of membranes. Biomolecular condensates, which assemble through LLPS, exhibit distinctive liquid droplet-like behavior and can exchange constituents with their surroundings. The regulation of condensate phases, including transitions from a liquid state to gel or irreversible aggregates, is important for their physiological functions and for controlling pathological progression, as observed in neurodegenerative diseases and cancer. While early studies on biomolecular condensates focused primarily on those in fluidic environments such as the cytosol, recent discoveries have revealed their existence in close proximity to, on, or even comprising membranes. The aim of this review is to provide an overview of the properties of membrane-associated condensates in a cellular context and their biological functions in relation to membranes.
Liquid droplet behavior of membrane-associated biomolecular condensates explored
Understanding how cells organize and compartmentalize their interiors is key to understanding how they function and respond to changes. This study analyzes data from past research to explore the roles of membrane-associated biomolecular condensates in cellular processes such as signaling, membrane dynamics, and the formation of specialized cellular domains. Researchers demonstrate how these condensates, formed through a process called liquid–liquid phase separation, selectively gather specific molecules while excluding others, thus regulating various cellular functions. The study also investigates how these condensates influence membrane shape, contribute to contact between different organelles, and control the movement of molecules within the cell. Researchers conclude that a deeper understanding of these condensates offers new insights into cell biology and may lead to new treatment strategies for diseases in which condensate function is disrupted. This summary was initially drafted using artificial intelligence, then revised and fact-checked by the author.
Journal Article
Effect of Endogenic and Exogenic Oxidative Stress Triggers on Adverse Pregnancy Outcomes: Preeclampsia, Fetal Growth Restriction, Gestational Diabetes Mellitus and Preterm Birth
2021
Oxidative stress is caused by an imbalance between the production of reactive oxygen species (ROS) in cells and tissues and the ability of a biological system to detoxify them. During a normal pregnancy, oxidative stress increases the normal systemic inflammatory response and is usually well-controlled by the balanced body mechanism of the detoxification of anti-oxidative products. However, pregnancy is also a condition in which this adaptation and balance can be easily disrupted. Excessive ROS is detrimental and associated with many pregnancy complications, such as preeclampsia (PE), fetal growth restriction (FGR), gestational diabetes mellitus (GDM), and preterm birth (PTB), by damaging placentation. The placenta is a tissue rich in mitochondria that produces the majority of ROS, so it is important to maintain normal placental function and properly develop its vascular network to ensure a safe and healthy pregnancy. Antioxidants may ameliorate these diseases, and related research is progressing. This review aimed to determine the association between oxidative stress and adverse pregnancy outcomes, especially PE, FGR, GDM, and PTB, and explore how to overcome this oxidative stress in these unfavorable conditions.
Journal Article
Exogenous melatonin induces salt and drought stress tolerance in rice by promoting plant growth and defense system
2024
Due to global climate change, crops are certainly confronted with a lot of abiotic and biotic stress factors during their growth that cause a serious threat to their development and overall productivity. Among different abiotic stresses, salt and drought are considered the most devastating stressors with serious impact on crop’s yield stability. Here, the current study aimed to elucidate how melatonin works in regulating plant biomass, oxidative stress, antioxidant defense system, as well as the expression of genes related to salt and drought stress in rice plants. Eight groups of rice plants (3 replicates, 5 plants each) underwent varied treatments: control, melatonin, salt, drought, salt + drought, salt + melatonin, drought + melatonin, and salt + drought + melatonin. Melatonin (100 µM) was alternately applied a week before stress exposure; salt stress received 100 mM NaCl every 3 days for 3 weeks, and drought stress involved 10% PEG. Young leaves were randomly sampled from each group. The results showed that melatonin treatment markedly reduces salt and drought stress damage by promoting root, shoot length, fresh and dry weight, increasing chlorophyll contents, and inhibiting excessive production of oxidative stress markers. Salt and drought stress significantly decreased the water balance, and damaged cell membrane by reducing relative water contents and increasing electrolyte leakage. However, melatonin treated rice plants showed high relative water contents and low electrolyte leakage. Under salt and drought stress conditions, exogenous application of melatonin boosted the expression level of salt and drought stress responsive genes like
OsSOS
,
OsNHX
,
OsHSF
and
OsDREB
in rice plants. Taken together, our results reveal that melatonin treatment significantly increases salt and drought tolerance of rice plants, by increasing plant biomass, suppressing ROS accumulation, elevating antioxidants defense efficiency, and up-regulating the expression of salt and drought stress responsive genes.
Journal Article
Enhanced Flavonoid Accumulation Reduces Combined Salt and Heat Stress Through Regulation of Transcriptional and Hormonal Mechanisms
2021
Abiotic stresses, such as salt and heat stress, coexist in some regions of the world and can have a significant impact on agricultural plant biomass and production. Rice is a valuable crop that is susceptible to salt and high temperatures. Here, we studied the role of flavanol 3-hydroxylase in response to combined salt and heat stress with the aim of better understanding the defensive mechanism of rice. We found that, compared with wild-type plants, the growth and development of transgenic plants were improved due to higher biosynthesis of kaempferol and quercetin. Furthermore, we observed that oxidative stress was decreased in transgenic plants compared with that in wild-type plants due to the reactive oxygen species scavenging activity of kaempferol and quercetin as well as the modulation of glutathione peroxidase and lipid peroxidase activity. The expression of high-affinity potassium transporter ( HKT ) and salt overly sensitive ( SOS ) genes was significantly increased in transgenic plants compared with in control plants after 12 and 24 h, whereas sodium-hydrogen exchanger ( NHX ) gene expression was significantly reduced in transgenic plants compared with in control plants. The expression of heat stress transcription factors (HSFs) and heat shock proteins (HSPs) in the transgenic line increased significantly after 6 and 12 h, although our understanding of the mechanisms by which the F3H gene regulates HKT , SOS , NHX , HSF , and HSP genes is limited. In addition, transgenic plants showed higher levels of abscisic acid (ABA) and lower levels of salicylic acid (SA) than were found in control plants. However, antagonistic cross talk was identified between these hormones when the duration of stress increased; SA accumulation increased, whereas ABA levels decreased. Although transgenic lines showed significantly increased Na+ ion accumulation, K+ ion accumulation was similar in transgenic and control plants, suggesting that increased flavonoid accumulation is crucial for balancing Na+/K+ ions. Overall, this study suggests that flavonoid accumulation increases the tolerance of rice plants to combined salt and heat stress by regulating physiological, biochemical, and molecular mechanisms.
Journal Article
Development of Integrated Crop Drought Index by Combining Rainfall, Land Surface Temperature, Evapotranspiration, Soil Moisture, and Vegetation Index for Agricultural Drought Monitoring
by
Lee, Yangwon
,
Kim, Nari
,
Lee, Soo-Jin
in
Agricultural drought
,
Agricultural production
,
agro–meteorology
2021
Various drought indices have been used for agricultural drought monitoring, such as Standardized Precipitation Index (SPI), Standardized Precipitation Evapotranspiration Index (SPEI), Palmer Drought Severity Index (PDSI), Soil Water Deficit Index (SWDI), Normalized Difference Vegetation Index (NDVI), Vegetation Health Index (VHI), Vegetation Drought Response Index (VegDRI), and Scaled Drought Condition Index (SDCI). They incorporate such factors as rainfall, land surface temperature (LST), potential evapotranspiration (PET), soil moisture content (SM), and vegetation index to express the meteorological and agricultural aspects of drought. However, these five factors should be combined more comprehensively and reasonably to explain better the dryness/wetness of land surface and the association with crop yield. This study aims to develop the Integrated Crop Drought Index (ICDI) by combining the weather factors (rainfall and LST), hydrological factors (PET and SM), and a vegetation factor (enhanced vegetation index (EVI)) to better express the wet/dry state of land surface and healthy/unhealthy state of vegetation together. The study area was the State of Illinois, a key region of the U.S. Corn Belt, and the quantification and analysis of the droughts were conducted on a county scale for 2004–2019. The performance of the ICDI was evaluated through the comparisons with SDCI and VegDRI, which are the representative drought index in terms of the composite of the dryness and vegetation elements. The ICDI properly expressed both the dry and wet trend of the land surface and described the state of the agricultural drought accompanied by yield damage. The ICDI had higher positive correlations with the corn yields than SDCI and VegDRI during the crucial growth period from June to August for 2004–2019, which means that the ICDI could reflect the agricultural drought well in terms of the dryness/wetness of land surface and the association with crop yield. Future work should examine the other factors for ICDI, such as locality, crop type, and the anthropogenic impacts, on drought. It is expected that the ICDI can be a viable option for agricultural drought monitoring and yield management.
Journal Article
Retrieval of Daily Reference Evapotranspiration for Croplands in South Korea Using Machine Learning with Satellite Images and Numerical Weather Prediction Data
2020
Evapotranspiration (ET) is an important component of the Earth’s energy and water cycle via the interaction between the atmosphere and the land surface. The reference evapotranspiration (ET0) is particularly important in the croplands because it is a convenient and reasonable method for calculating the actual evapotranspiration (AET) that represents the loss of water in the croplands through the soil evaporation and vegetation transpiration. To date, many efforts have been made to retrieve ET0 on a spatially continuous grid. In particular, the Moderate Resolution Imaging Spectroradiometer (MODIS) product is provided with a reasonable spatial resolution of 500 m and a temporal resolution of 8 days. However, the applicability to the local-scale variabilities due to complex and heterogeneous land surfaces in countries like South Korea is not sufficiently validated. Meanwhile, the AI approaches showed a useful functionality for the ET0 retrieval on the local scale but have rarely demonstrated a substantial product for a spatially continuous grid. This paper presented a retrieval of the daily reference evapotranspiration (ET0) over a 500 m grid for croplands in South Korea using machine learning (ML) with satellite images and numerical weather prediction data. In a blind test for 2013–2019, the ML-based ET0 model produced the accuracy statistics with a root mean square error of 1.038 mm/day and a correlation coefficient of 0.870. The results of the blind test were stable irrespective of location, year, and month. This outcome is presumably because the input data of the ML-based ET0 model were suitably arranged spatially and temporally, and the optimization of the model was appropriate. We found that the relative humidity and land surface temperature were the most influential variables for the ML-based ET0 model, but the variables with lower importance were also necessary to consider the nonlinearity between the variables. Using the daily ET0 data produced over the 500 m grid, we conducted a case study to examine agrometeorological characteristics of the croplands in South Korea during the period when heatwave and drought events occurred. Through the experiments, the feasibility of the ML-based ET0 retrieval was validated, especially for local agrometeorological applications in regions with heterogeneous land surfaces, such as South Korea.
Journal Article
Halotolerant endophytic bacteria alleviate salinity stress in rice (oryza sativa L.) by modulating ion content, endogenous hormones, the antioxidant system and gene expression
by
Kim, Nari
,
Jan, Rahmatullah
,
Kim, Eun-Gyeong
in
Abiotic stress
,
Abscisic acid
,
adverse effects
2023
Excessive salinity reduces crop production and negatively impacts agriculture worldwide. We previously isolated endophytic bacterial strains from two halophytic species:
Artemisia princeps
and
Chenopodium ficifolium
. We used three bacterial isolates: ART-1 (
Lysinibacillus fusiformis
), ART-10 (
Lysinibacillus sphaericus
), and CAL-8 (
Brevibacterium pityocampae
) to alleviate the impact of salinity stress on rice. The impact of 160 mM NaCl salinity on rice was significantly mitigated following inoculation with these bacterial strains, resulting in increased growth and chlorophyll content. Furthermore,
OsNHX1
,
OsAPX1
,
OsPIN1
and
OsCATA
expression was increased, but
OsSOS
expression was decreased. Inductively coupled plasma mass spectrometry (ICP-MS) revealed reduced K
+
and Na
+
levels in shoots of bacteria-inoculated plants, whereas that of Mg
2+
was increased. Bacterial inoculation reduced the content of total flavonoids in rice leaves. Salinized plants inoculated with bacteria showed reduced levels of endogenous salicylic acid (SA) and abscisic acid (ABA) but increased levels of jasmonic acid (JA). In conclusion, the bacterial isolates ART-1, ART-10, and CAL-8 alleviated the adverse effect of salinity on rice growth, which justifies their use as an eco-friendly agricultural practice.
Journal Article
Drought and UV Radiation Stress Tolerance in Rice Is Improved by Overaccumulation of Non-Enzymatic Antioxidant Flavonoids
by
Kim, Nari
,
Jan, Rahmatullah
,
Park, Jae-Ryoung
in
Agricultural production
,
antioxidant content
,
Antioxidants
2022
Drought and ultraviolet radiation (UV radiation) are the coexisting environmental factors that negatively affect plant growth and development via oxidative damage. Flavonoids are reactive, scavenging oxygen species (ROS) and UV radiation-absorbing compounds generated under stress conditions. We investigated the biosynthesis of kaempferol and quercetin in wild and flavanone 3-hydroxylase (F3H) overexpresser rice plants when drought and UV radiation stress were imposed individually and together. Phenotypic variation indicated that both kinds of stress highly reduced rice plant growth parameters in wild plants as compared to transgenic plants. When combined, the stressors adversely affected rice plant growth parameters more than when they were imposed individually. Overaccumulation of kaempferol and quercetin in transgenic plants demonstrated that both flavonoids were crucial for enhanced tolerance to such stresses. Oxidative activity assays showed that kaempferol and quercetin overaccumulation with strong non-enzymatic antioxidant activity mitigated the accumulation of ROS under drought and UV radiation stress. Lower contents of salicylic acid (SA) in transgenic plants indicated that flavonoid accumulation reduced stress, which led to the accumulation of low levels of SA. Transcriptional regulation of the dehydrin (DHN) and ultraviolet-B resistance 8 (UVR8) genes showed significant increases in transgenic plants compared to wild plants under stress. Taken together, these results confirm the usefulness of kaempferol and quercetin in enhancing tolerance to both drought and UV radiation stress.
Journal Article
Effects of an amino acid mixture on alcohol metabolism and alcohol-related symptoms in healthy adults
2026
Alcohol consumption is associated with metabolic burden and a range of alcohol-related symptoms. Amino acids have been suggested to support hepatic metabolism and recovery following alcohol consumption. This study investigated the effects of Amino Liver (AL), an amino acid mixture, on alcohol metabolism and alcohol-related symptoms in healthy adults. In a randomized, double-blind, placebo-controlled, crossover clinical trial, healthy adults consumed AL or placebo prior to alcohol consumption. Blood alcohol and acetaldehyde concentrations were measured at predefined time points up to 13 h after alcohol consumption. Alcohol-related symptoms were assessed using the Alcohol Hangover Severity Scale (AHSS). Safety parameters were also evaluated. AL intake was associated with a more rapid reduction in blood alcohol and acetaldehyde concentrations compared with placebo. Participants who received AL reported lower severity of alcohol-related symptoms, particularly fatigue and cognitive difficulty, at 13 h after alcohol consumption. No clinically significant adverse effects were observed. The findings suggest that AL supplementation is associated with favorable modulation of alcohol metabolism and reduced severity of alcohol-related symptoms. Although further studies are required to confirm these findings and clarify underlying mechanisms, AL may represent a potential nutritional approach for supporting alcohol metabolism following alcohol consumption. Trial registration: Clinical Research Information Service (CRIS), Republic of Korea (KCT0010612). Registered 10 June 2025. Retrospectively registered.
Journal Article
A Comparison Between Major Artificial Intelligence Models for Crop Yield Prediction: Case Study of the Midwestern United States, 2006–2015
by
Kim, Nari
,
Hong, Sungwook
,
Ha, Kyung-Ja
in
Accuracy
,
Agricultural production
,
Artificial intelligence
2019
This paper compares different artificial intelligence (AI) models in order to develop the best crop yield prediction model for the Midwestern United States (US). Through experiments to examine the effects of phenology using three different periods, we selected the July–August (JA) database as the best months to predict corn and soybean yields. Six different AI models for crop yield prediction are tested in this research. Then, a comprehensive and objective comparison is conducted between the AI models. Particularly for the deep neural network (DNN) model, we performed an optimization process to ensure the best configurations for the layer structure, cost function, optimizer, activation function, and drop-out ratio. In terms of mean absolute error (MAE), our DNN model with the JA database was approximately 21–33% and 17–22% more accurate for corn and soybean yields, respectively, than the other five AI models. This indicates that corn and soybean yields for a given year can be forecasted in advance, at the beginning of September, approximately a month or more ahead of harvesting time. A combination of the optimized DNN model and spatial statistical methods should be investigated in future work, to mitigate partly clustered errors in some regions.
Journal Article