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731 result(s) for "Kim, Yejin"
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Microglia and complement mediate early corticostriatal synapse loss and cognitive dysfunction in Huntington’s disease
Huntington’s disease (HD) is a devastating monogenic neurodegenerative disease characterized by early, selective pathology in the basal ganglia despite the ubiquitous expression of mutant huntingtin. The molecular mechanisms underlying this region-specific neuronal degeneration and how these relate to the development of early cognitive phenotypes are poorly understood. Here we show that there is selective loss of synaptic connections between the cortex and striatum in postmortem tissue from patients with HD that is associated with the increased activation and localization of complement proteins, innate immune molecules, to these synaptic elements. We also found that levels of these secreted innate immune molecules are elevated in the cerebrospinal fluid of premanifest HD patients and correlate with established measures of disease burden. In preclinical genetic models of HD, we show that complement proteins mediate the selective elimination of corticostriatal synapses at an early stage in disease pathogenesis, marking them for removal by microglia, the brain’s resident macrophage population. This process requires mutant huntingtin to be expressed in both cortical and striatal neurons. Inhibition of this complement-dependent elimination mechanism through administration of a therapeutically relevant C1q function-blocking antibody or genetic ablation of a complement receptor on microglia prevented synapse loss, increased excitatory input to the striatum and rescued the early development of visual discrimination learning and cognitive flexibility deficits in these models. Together, our findings implicate microglia and the complement cascade in the selective, early degeneration of corticostriatal synapses and the development of cognitive deficits in presymptomatic HD; they also provide new preclinical data to support complement as a therapeutic target for early intervention. Microglia mediate the early and selective degeneration of corticostriatal synapses and the development of cognitive deficits in presymptomatic Huntington’s disease via the complement cascade.
The impact of migraine and probable migraine on productivity loss in Korea: A cross-sectional online survey
Migraine is an enormous burden on society, but relevant studies are limited. The population of interest of this study was migraine or probable migraine (PM) in Korea. In this population, we aimed to assess the productivity loss through the level of severity defined by monthly migraine days (MMD) and analgesic frequency and to estimate costs and associated factors of productivity loss. We conducted an online survey of adults with migraine symptoms. We defined migraine and PM using the modified International Classification of Headache Disorders, second edition. Severity level was defined by subgroups of MMD (0–3, 4–14, and ≥15 days) and analgesic frequency (0, 1, 2, 3, and ≥4 per week). Productivity loss was assessed using the Work Productivity and Activity Impairment questionnaire and consisted of absenteeism, presenteeism, overall work productivity loss, and activity impairment. The costs of productivity loss due to absenteeism and presenteeism were calculated in 2020 USD. We used negative binomial regression to identify the factors associated with the costs of productivity loss. We identified 362 respondents with migraine or PM. Mean age was 41.7 years, 75.7% were female (N = 274), and 73.2% (N = 265) were employed. On average, productivity losses due to absenteeism and presenteeism were 8.1% and 39.7%, respectively. As MMD increased, there was a trend toward increased activity impairment, presenteeism, and overall work productivity loss. The mean overall productivity loss cost was USD 44.61 per person per day. Duration of migraine attacks was significantly associated with higher absenteeism costs. The results of this study indicate that the higher the MMD, the greater the productivity loss in patients with migraine or PM in Korea. We also found that patients with low-frequency migraine and PM experienced substantial productivity loss. This study provides comprehensive evidence of the burden of migraine in Korea using a representative sample.
Time-Frequency Multi-Domain 1D Convolutional Neural Network with Channel-Spatial Attention for Noise-Robust Bearing Fault Diagnosis
This paper proposes a noise-robust and accurate bearing fault diagnosis model based on time-frequency multi-domain 1D convolutional neural networks (CNNs) with attention modules. The proposed model, referred to as the TF-MDA model, is designed for an accurate bearing fault classification model based on vibration sensor signals that can be implemented at industry sites under a high-noise environment. Previous 1D CNN-based bearing diagnosis models are mostly based on either time domain vibration signals or frequency domain spectral signals. In contrast, our model has parallel 1D CNN modules that simultaneously extract features from both the time and frequency domains. These multi-domain features are then fused to capture comprehensive information on bearing fault signals. Additionally, physics-informed preprocessings are incorporated into the frequency-spectral signals to further improve the classification accuracy. Furthermore, a channel and spatial attention module is added to effectively enhance the noise-robustness by focusing more on the fault characteristic features. Experiments were conducted using public bearing datasets, and the results indicated that the proposed model outperformed similar diagnosis models on a range of noise levels ranging from −6 to 6 dB signal-to-noise ratio (SNR).
Evaluation of the k-nearest neighbor method for forecasting the influent characteristics of wastewater treatment plant
The k-nearest neighbor (k-NN) method was evaluated to predict the influent flow rate and four water qualities, namely chemical oxygen demand (COD), suspended solid (SS), total nitrogen (T-N) and total phosphorus (T-P) at a wastewater treatment plant (WWTP). The search range and approach for determining the number of nearest neighbors (NNs) under dry and wet weather conditions were initially optimized based on the root mean square error (RMSE). The optimum search range for considering data size was one year. The square root-based (SR) approach was superior to the distance factor-based (DF) approach in determining the appropriate number of NNs. However, the results for both approaches varied slightly depending on the water quality and the weather conditions. The influent flow rate was accurately predicted within one standard deviation of measured values. Influent water qualities were well predicted with the mean absolute percentage error (MAPE) under both wet and dry weather conditions. For the seven-day prediction, the difference in predictive accuracy was less than 5% in dry weather conditions and slightly worse in wet weather conditions. Overall, the k-NN method was verified to be useful for predicting WWTP influent characteristics.
Visualization with Prediction Scheme for Early DDoS Detection in Ethereum
Blockchain technologies have gained widespread use in security-sensitive applications due to their robust data protection. However, as blockchains are increasingly integrated into critical data management systems, they have become attractive targets for attackers. Among the various attacks on blockchain systems, distributed denial of service (DDoS) attacks are one of the most significant and potentially devastating. These attacks render the systems incapable of processing transactions, causing the blockchain to come to a halt. To address the challenge of detecting DDoS attacks on blockchains, existing visualization schemes have been developed. However, these schemes often fail to provide early DDoS detection since they typically display only past and current system status. In this paper, we present a novel visualization scheme that not only portrays past and current values but also forecasts future expected system statuses. We achieve these future predictions by utilizing polynomial regression with blockchain data. Additionally, we offer an alternative DDoS detection method employing statistical analysis, specifically the coefficient of determination, to enhance accuracy. Through our experiments, we demonstrate that our proposed scheme excels at predicting future blockchain statuses and anticipating DDoS attacks with minimal error. Our work empowers system managers of blockchain-based applications to identify and mitigate DDoS attacks at an earlier stage.
CancerGPT for few shot drug pair synergy prediction using large pretrained language models
Large language models (LLMs) have been shown to have significant potential in few-shot learning across various fields, even with minimal training data. However, their ability to generalize to unseen tasks in more complex fields, such as biology and medicine has yet to be fully evaluated. LLMs can offer a promising alternative approach for biological inference, particularly in cases where structured data and sample size are limited, by extracting prior knowledge from text corpora. Here we report our proposed few-shot learning approach, which uses LLMs to predict the synergy of drug pairs in rare tissues that lack structured data and features. Our experiments, which involved seven rare tissues from different cancer types, demonstrate that the LLM-based prediction model achieves significant accuracy with very few or zero samples. Our proposed model, the CancerGPT (with ~ 124M parameters), is comparable to the larger fine-tuned GPT-3 model (with ~ 175B parameters). Our research contributes to tackling drug pair synergy prediction in rare tissues with limited data, and also advancing the use of LLMs for biological and medical inference tasks.
Recent Progress in Drug Release Testing Methods of Biopolymeric Particulate System
Biopolymeric microparticles have been widely used for long-term release formulations of short half-life chemicals or synthetic peptides. Characterization of the drug release from microparticles is important to ensure product quality and desired pharmacological effect. However, there is no official method for long-term release parenteral dosage forms. Much work has been done to develop methods for in vitro drug release testing, generally grouped into three major categories: sample and separate, dialysis membrane, and continuous flow (flow-through cell) methods. In vitro drug release testing also plays an important role in providing insight into the in vivo performance of a product. In vitro release test with in vivo relevance can reduce the cost of conducting in vivo studies and accelerate drug product development. Therefore, investigation of the in vitro–in vivo correlation (IVIVC) is increasingly becoming an essential part of particulate formulation development. This review summarizes the principles of the in vitro release testing methods of biopolymeric particulate system with the recent research articles and discusses their characteristics including IVIVC, accelerated release testing methods, and stability of encapsulated drugs.
Personality Factors Predicting Smartphone Addiction Predisposition: Behavioral Inhibition and Activation Systems, Impulsivity, and Self-Control
The purpose of this study was to identify personality factor-associated predictors of smartphone addiction predisposition (SAP). Participants were 2,573 men and 2,281 women (n = 4,854) aged 20-49 years (Mean ± SD: 33.47 ± 7.52); participants completed the following questionnaires: the Korean Smartphone Addiction Proneness Scale (K-SAPS) for adults, the Behavioral Inhibition System/Behavioral Activation System questionnaire (BIS/BAS), the Dickman Dysfunctional Impulsivity Instrument (DDII), and the Brief Self-Control Scale (BSCS). In addition, participants reported their demographic information and smartphone usage pattern (weekday or weekend average usage hours and main use). We analyzed the data in three steps: (1) identifying predictors with logistic regression, (2) deriving causal relationships between SAP and its predictors using a Bayesian belief network (BN), and (3) computing optimal cut-off points for the identified predictors using the Youden index. Identified predictors of SAP were as follows: gender (female), weekend average usage hours, and scores on BAS-Drive, BAS-Reward Responsiveness, DDII, and BSCS. Female gender and scores on BAS-Drive and BSCS directly increased SAP. BAS-Reward Responsiveness and DDII indirectly increased SAP. We found that SAP was defined with maximal sensitivity as follows: weekend average usage hours > 4.45, BAS-Drive > 10.0, BAS-Reward Responsiveness > 13.8, DDII > 4.5, and BSCS > 37.4. This study raises the possibility that personality factors contribute to SAP. And, we calculated cut-off points for key predictors. These findings may assist clinicians screening for SAP using cut-off points, and further the understanding of SA risk factors.
Drug repurposing for COVID-19 using graph neural network and harmonizing multiple evidence
Since the 2019 novel coronavirus disease (COVID-19) outbreak in 2019 and the pandemic continues for more than one year, a vast amount of drug research has been conducted and few of them got FDA approval. Our objective is to prioritize repurposable drugs using a pipeline that systematically integrates the interaction between COVID-19 and drugs, deep graph neural networks, and in vitro/population-based validations. We first collected all available drugs (n = 3635) related to COVID-19 patient treatment through CTDbase. We built a COVID-19 knowledge graph based on the interactions among virus baits, host genes, pathways, drugs, and phenotypes. A deep graph neural network approach was used to derive the candidate drug’s representation based on the biological interactions. We prioritized the candidate drugs using clinical trial history, and then validated them with their genetic profiles, in vitro experimental efficacy, and population-based treatment effect. We highlight the top 22 drugs including Azithromycin, Atorvastatin, Aspirin, Acetaminophen, and Albuterol. We further pinpointed drug combinations that may synergistically target COVID-19. In summary, we demonstrated that the integration of extensive interactions, deep neural networks, and multiple evidence can facilitate the rapid identification of candidate drugs for COVID-19 treatment.
Dynamic Pose Estimation Using Multiple RGB-D Cameras
Human poses are difficult to estimate due to the complicated body structure and the self-occlusion problem. In this paper, we introduce a marker-less system for human pose estimation by detecting and tracking key body parts, namely the head, hands, and feet. Given color and depth images captured by multiple red, green, blue, and depth (RGB-D) cameras, our system constructs a graph model with segmented regions from each camera and detects the key body parts as a set of extreme points based on accumulative geodesic distances in the graph. During the search process, local detection using a supervised learning model is utilized to match local body features. A final set of extreme points is selected with a voting scheme and tracked with physical constraints from the unified data received from the multiple cameras. During the tracking process, a Kalman filter-based method is introduced to reduce positional noises and to recover from a failure of tracking extremes. Our system shows an average of 87% accuracy against the commercial system, which outperforms the previous multi-Kinects system, and can be applied to recognize a human action or to synthesize a motion sequence from a few key poses using a small set of extremes as input data.