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"La Trobe University"
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Donor-linked families in the digital age : relatedness and regulation
by
Kelly, Fiona (Dean of La Trobe University Law School, Victoria, Australia), editor
,
Dempsey, Deborah, editor
,
Byrt, Adrienne, 1983- editor
in
Artificial insemination, Human Social aspects.
,
Artificial insemination, Human Law and legislation.
,
Children of assisted reproductive technology Family relationships.
2023
\"Scholars and practitioners from a range of social science, legal, and health-related backgrounds will benefit from this volume. This book includes diverse contributions from a global context relating to donor conception and donor-linked families, giving it both international and interdisciplinary appeal\"-- Provided by publisher.
Characterisation of Cellulose Synthase Like F6 (CslF6) Mutants Shows Altered Carbon Metabolism in β-D-(1,3;1,4)-Glucan Deficient Grain in Brachypodium distachyon
2021
Brachypodium distachyon is a small, fast growing grass species in the Pooideae subfamily that has become established as a model for other temperate cereals of agricultural significance, such as barley ( Hordeum vulgare ) and wheat ( Triticum aestivum ). The unusually high content in whole grains of β- D -(1,3;1,4)-glucan or mixed linkage glucan (MLG), considered a valuable dietary fibre due to its increased solubility in water compared with cellulose, makes B. distachyon an attractive model for these polysaccharides. The carbohydrate composition of grain in B. distachyon is interesting not only in understanding the synthesis of MLG, but more broadly in the mechanism(s) of carbon partitioning in cereal grains. Several mutants in the major MLG synthase, cellulose synthase like (CSL) F6, were identified in a screen of a TILLING population that show a loss of function in vitro . Surprisingly, loss of cslf6 synthase capacity appears to have a severe impact on survival, growth, and development in B. distachyon in contrast to equivalent mutants in barley and rice. One mutant, A656T, which showed milder growth impacts in heterozygotes shows a 21% (w/w) reduction in average grain MLG and more than doubling of starch compared with wildtype. The endosperm architecture of grains with the A656T mutation is altered, with a reduction in wall thickness and increased deposition of starch in larger granules than typical of wildtype B. distachyon . Together these changes demonstrate an alteration in the carbon storage of cslf6 mutant grains in response to reduced MLG synthase capacity and a possible cross-regulation with starch synthesis which should be a focus in future work in composition of these grains. The consequences of these findings for the use of B. distachyon as a model species for understanding MLG synthesis, and more broadly the implications for improving the nutritional value of cereal grains through alteration of soluble dietary fibre content are discussed.
Journal Article
Genotype-independent de novo regeneration protocol in Cannabis sativa L. through direct organogenesis from cotyledonary nodes
by
Bennur, Praveen Lakshman
,
Doblin, Monika S.
,
Fernando, Shyama C.
in
Acclimatization
,
Analysis
,
Biological Techniques
2025
Efficient regeneration protocols are essential for large-scale propagation and genetic manipulation of recalcitrant medicinal species such as
Cannabis sativa
. Existing direct and indirect regeneration methods are highly genotype and explant-dependent, limiting broader applicability. Here, we report a five-stage (S
0
–S
4
) optimised protocol that is reproducible and achieves high-efficiency direct
de novo
regeneration using cotyledonary node explants from both hemp and medicinal cannabis genotypes. A 1% (v/v) H₂O₂-based sterilisation method significantly improved seed germination and reduced endophyte contamination. Among embryo-derived explants, the cotyledonary node attached to the cotyledon showed superior regeneration efficiency through two distinct pathways: axillary shoot initiation and
de novo
regeneration, the latter achieving ~ 70–90% efficiency in six hemp cultivars and three medicinal cannabis lines on TDZ and NAA containing shoot regeneration medium. Histological analysis confirmed true
de novo
shoot formation from peripheral cortical cells, independent of pre-existing meristems or callus.
De novo
shoots were initiated within 2 d of shoot regeneration medium treatment, indicating rapid cellular commitment to organogenesis, with optimal regeneration between 7 and 14 d. Prolonged exposure proved detrimental, causing excessive callusing and vitrification. Repeated subculturing during proliferation stage enabled scalable shoot multiplication, yielding an average of 7 shoots per responding explant (~ 11.4 shoots per seed), outperforming previously published cotyledon-based (~ 2-fold) and hypocotyl-based (~ 5-fold) methods under comparable conditions. Regenerated plantlets developed healthy roots (with IAA or IBA) and acclimatised readily, exhibiting normal vegetative and reproductive growth. The protocol’s reproducibility across diverse cannabis genotypes and its applicability to other medicinal angiosperm species in this study highlights its value for both research and commercial applications.
Journal Article
The Phosphate Fast-Responsive Genes PECP1 and PPsPase1 Affect Phosphocholine and Phosphoethanolamine Content
by
The University of Western Australia (UWA)
,
David, Pascale
,
The University of Edinburgh
in
Life Sciences
,
MEMBRANES, TRANSPORT AND BIOENERGETICS
2018
Phosphate starvation-mediated induction of the HAD-type phosphatases PPsPase1 (AT1G73010) and PECP1 (AT1G17710) has been reported in Arabidopsis (Arabidopsis thaliana). However, little is known about their in vivo function or impact on plant responses to nutrient deficiency. The preferences of PPsPase1 and PECP1 for different substrates have been studied in vitro but require confirmation in planta. Here, we examined the in vivo function of both enzymes using a reverse genetics approach. We demonstrated that PPsPase1 and PECP1 affect plant phosphocholine and phosphoethanolamine content, but not the pyrophosphate-related phenotypes. These observations suggest that the enzymes play a similar role in planta related to the recycling of polar heads from membrane lipids that is triggered during phosphate starvation. Altering the expression of the genes encoding these enzymes had no effect on lipid composition, possibly due to compensation by other lipid recycling pathways triggered during phosphate starvation. Furthermore, our results indicated that PPsPase1 and PECP1 do not influence phosphate homeostasis, since the inactivation of these genes had no effect on phosphate content or on the induction of molecular markers related to phosphate starvation. A combination of transcriptomics and imaging analyses revealed that PPsPase1 and PECP1 display a highly dynamic expression pattern that closely mirrors the phosphate status. This temporal dynamism, combined with the wide range of induction levels, broad expression, and lack of a direct effect on Pi content and regulation, makes PPsPase1 and PECP1 useful molecular markers of the phosphate starvation response.
Journal Article
Crystal structure of a subtilisin-like autotransporter passenger domain reveals insights into its cytotoxic function
by
Australian Nuclear Science and Technology Organisation [Australie] (ANSTO)
,
Heras, Begoña
,
Anderson, Marilyn, A
in
13/106
,
14/19
,
631/326
2023
Abstract Autotransporters (ATs) are a large family of bacterial secreted and outer membrane proteins that encompass a wide range of enzymatic activities frequently associated with pathogenic phenotypes. We present the structural and functional characterisation of a subtilase autotransporter, Ssp, from the opportunistic pathogen Serratia marcescens . Although the structures of subtilases have been well documented, this subtilisin-like protein is associated with a 248 residue β-helix and itself includes three finger-like protrusions around its active site involved in substrate interactions. We further reveal that the activity of the subtilase AT is required for entry into epithelial cells as well as causing cellular toxicity. The Ssp structure not only provides details about the subtilase ATs, but also reveals a common framework and function to more distantly related ATs. As such these findings also represent a significant step forward toward understanding the molecular mechanisms underlying the functional divergence in the large AT superfamily.
Journal Article
Complex Sentence Constructions in Australian Languages
Over the past fifteen years, descriptions of Australian Aboriginal languages have provided important data for the typological study of morpho-syntactic phenomena. The present volume presents descriptions of complex sentence phenomena in ten Australian languages and provides important new material in this area of current concern in linguistics. Complex sentences are described either from a syntactic or from a semantic (discourse-functional) point of view. The papers draw on data from widely distributed and, in some instances, previously undescribed languages. Among others descriptions of the (so-far) poorly known non-Pama-Nyungan languages of northern Australia, as well as Pama-Nyungan languages central and northern Australia are included in this volume.
Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals
by
Génétique Physiologie et Systèmes d'Elevage (GenPhySE) ; Ecole Nationale Vétérinaire de Toulouse (ENVT) ; Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT) ; Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Ecole d'Ingénieurs de Purpan (INP - PURPAN) ; Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
,
Govignon-Gion, Armelle, Gion
,
Daetwyler, Hans D
in
38/39
,
38/91
,
45/43
2018
Stature is affected by many polymorphisms of small effect in humans(1). In contrast, variation in dogs, even within breeds, has been suggested to be largely due to variants in a small number of genes(2,3). Here we use data from cattle to compare the genetic architecture of stature to those in humans and dogs. We conducted a meta-analysis for stature using 58,265 cattle from 17 populations with 25.4 million imputed whole-genome sequence variants. Results showed that the genetic architecture of stature in cattle is similar to that in humans, as the lead variants in 163 significantly associated genomic regions (P < 5 x 10(-8)) explained at most 13.8% of the phenotypic variance. Most of these variants were noncoding, including variants that were also expression quantitative trait loci (eQTLs) and in ChIP-seq peaks. There was significant overlap in loci for stature with humans and dogs, suggesting that a set of common genes regulates body size in mammals
Journal Article
Structural variation in the pangenome of wild and domesticated barley
2024
P an genomes are collections of annotated genome sequences of multiple individuals of a species 1 . The structural variants uncovered by these datasets are a major asset to genetic analysis in crop plants 2 . Here we report a pangenome of barley comprising long-read sequence assemblies of 76 wild and domesticated genomes and short-read sequence data of 1,315 genotypes. An expanded catalogue of sequence variation in the crop includes structurally complex loci that are rich in gene copy number variation. To demonstrate the utility of the pangenome, we focus on four loci involved in disease resistance, plant architecture, nutrient release and trichome development. Novel allelic variation at a powdery mildew resistance locus and population-specific copy number gains in a regulator of vegetative branching were found. Expansion of a family of starch-cleaving enzymes in elite malting barleys was linked to shifts in enzymatic activity in micro-malting trials. Deletion of an enhancer motif is likely to change the developmental trajectory of the hairy appendages on barley grains. Our findings indicate that allelic diversity at structurally complex loci may have helped crop plants to adapt to new selective regimes in agricultural ecosystems.Reliable crop yields fuelled the rise of human civilizations. As people embraced a new way of life, cultivated plants, too, had to adapt to the needs of their domesticators. There are different adaptive requirements in a wild compared with an arable habitat. Crop plants and their wild progenitors differ in how many vegetative branches they initiate or how many seeds or fruits they produce and when. A case in point is barley (Hordeum vulgare): in six-rowed forms of the crops, thrice as many grains set as in the ancestral two-rowed forms. This change was brought about by knockout mutations 3 of a recently evolved regulator 4 of inflorescence development. Consequently, six-rowed barleys came to predominate in most barley-growing regions 5 . Taking a broader view of the environment as a set of exogeneous factors that drive natural selection, barley provides another fascinating, and economically important, example. The process of malting involves the sprouting of moist barley grains, driving the release of enzymes that break down starch into fermentable sugars. In the wild, various environmental cues can trigger germination to improve the odds of the emerging seedling encountering favourable weather conditions for subsequent growth 6 . In the malt house, by contrast, germination has to be fast and uniform in modern cultivars to satisfy the desired specifications of the industry. In addition to these examples, traits such as disease resistance, plant architecture and nutrient use have been a focus for plant breeders and studied intensively by barley geneticists 7 . Although barley genetic analysis flourished during a 'classical' period 8 in the first half of the 20th century, it started to lag behind small-genome models because of difficulties in adapting molecular biology techniques to a large genome rich in repeats 9 . However, interest in barley as a diploid model for temperate cereals has surged again as DNA sequencing became more powerful. High-quality sequences of several barley genomes have been recently assembled 10 . New sequencing technologies have shifted the focus of
Journal Article
The microbiology of phosphorus removal in activated sludge processes - the current state of play
by
Seviour, Robert J. (La Trobe University, Bendigo, Victoria, Australia), E-mail: r.seviour@latrobe.edu.au
,
McIlroy, Simon (La Trobe University, Bendigo, Victoria, Australia)
in
Accumulibacter
,
Activated sludge
,
Aerobiosis - physiology
2008
This review discusses critically what we know and would like to know about the microbiology of phosphorus (P) removal in activated sludge systems. In particular, the description of the genome sequences of two strains of the polyphosphate accumulating organism found in these processes, Candidatus 'Accumulibacter phosphatis', allows us to address many of the previously unanswered questions relating to how these processes behave, and to raise new questions about the microbiology of P removal. This article attempts to be deliberately speculative, and inevitably subjective, but hopefully at the same time useful to those who have an active interest in these environmentally very important processes.
Journal Article
Absorption of foliar-applied Zn in sunflower ( Helianthus annuus ): importance of the cuticle, stomata and trichomes
by
Tang, Caixian
,
The University of Western Australia (UWA)
,
Wang, Peng
in
absorption
,
Absorption, Physiological
,
Editor's Choice
2019
Abstract
Background and Aims
The pathways whereby foliar-applied nutrients move across the leaf surface remain unclear. The aim of the present study was to examine the pathways by which foliar-applied Zn moves across the sunflower (Helianthus annuus) leaf surface, considering the potential importance of the cuticle, stomata and trichomes.
Methods
Using synchrotron-based X-ray florescence microscopy and nanoscale secondary ion mass spectrometry (NanoSIMS), the absorption of foliar-applied ZnSO4 and nano-ZnO were studied in sunflower. The speciation of Zn was also examined using synchrotron-based X-ray absorption spectroscopy.
Key Results
Non-glandular trichomes (NGTs) were particularly important for foliar Zn absorption, with Zn preferentially accumulating within trichomes in ≤15 min. The cuticle was also found to have a role, with Zn appearing to move across the cuticle before accumulating in the walls of the epidermal cells. After 6 h, the total Zn that accumulated in the NGTs was approx. 1.9 times higher than in the cuticular tissues. No marked accumulation of Zn was found within the stomatal cavity, probably indicating a limited contribution of the stomatal pathway. Once absorbed, the Zn accumulated in the walls of the epidermal and the vascular cells, and trichome bases of both leaf sides, with the bundle sheath extensions that connected to the trichomes seemingly facilitating this translocation. Finally, the absorption of nano-ZnO was substantially lower than for ZnSO4, with Zn probably moving across the leaf surface as soluble Zn rather than nanoparticles.
Conclusions
In sunflower, both the trichomes and cuticle appear to be important for foliar Zn absorption.
Journal Article