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This study summarises six years of spatio-temporal patterns of the discarded demersal community fauna recorded by onboard scientific observer program for both artisanal and industrial crustacean fisheries between 2014 and 2019, from mesophotic to aphotic depths (96 to 650 m) along the southern Humboldt Current System (28–38°S). In this period, one cold and two warm climatic events were observed during the austral summer 2014, 2015–2016 (ENSO Godzilla), and 2016–2017 (coastal ENSO), respectively. Satellite information showed that Chlorophyll-a concentration varied seasonally and latitudinally, associated with upwelling centres, while equatorial wind stress decreased southward of 36°S. Discards were composed of 108 species, dominated by finfish and molluscs. The Chilean hake Merluccius gayi was dominant and ubiquitous (occurrence, 95% of 9104 hauls), being the most vulnerable species of the bycatch. Three assemblages were identified: assemblage 1 (~200 m deep), dominated by flounders Hippoglossina macrops and lemon crabs Platymera gaudichaudii , assemblage 2 (~260 m deep), dominated by squat lobsters Pleuroncodes monodon and Cervimunida johni and assemblage 3 (~320 m depth), dominated by grenadiers Coelorinchus aconcagua and cardinalfish Epigonus crassicaudus . These assemblages were segregated by depth, and varied by year, and geographic zone. The latter represented changes in the width of the continental shelf, increasing southward of 36°S. Alpha-diversity indexes (richness, Shannon, Simpson, and Pielou) also varied with depth and latitude, with higher diversity in deeper continental waters (>300 m), between 2018–2019. Finally, at a spatial scale of tens of kilometres, and a monthly basis, interannual variations of biodiversity occurred in the demersal community. Surface sea temperature, chlorophyll-a, or wind stress did not correlate with discarded demersal fauna diversity of the crustacean fishery operating along central Chile.

Knowledge of continental shelf faunal biodiversity of Antarctica is patchy and as such, the ecology of this unique ecosystem is not fully understood. To this end, we deployed baited cameras at 20 locations along ~ 500 km of the Western Antarctic Peninsula (WAP) at depths from 90 to 797 m. We identified 111 unique taxa, with mud bottom accounting for 90% of the dominant ([greater than or equal to] 50% cover) habitat sampled. Amphipoda comprised 41% of the total maximum number of individuals per camera deployment (MaxN) and occurred on 75% of deployments. Excluding this taxon, the highest MaxN occurred around King George/25 de Mayo Island and was driven primarily by the abundance of krill (Euphausiidae), which accounted for 36% of total average MaxN among deployments around this island. In comparison, krill comprised 22% of total average MaxN at Deception Island and only 10% along the peninsula. Taxa richness, diversity, and evenness all increased with depth and depth explained 18.2% of the variation in community structure among locations, which may be explained by decreasing ice scour with depth. We identified a number of Vulnerable Marine Ecosystem taxa, including habitat-forming species of cold-water corals and sponge fields. Channichthyidae was the most common fish family, occurring on 80% of all deployments. The Antarctic jonasfish (Notolepis coatsorum) was the most frequently encountered fish taxa, occurring on 70% of all deployments and comprising 25% of total MaxN among all deployments. Nototheniidae was the most numerically abundant fish family, accounting for 36% of total MaxN and was present on 70% of the deployments. The WAP is among the fastest warming regions on Earth and mitigating the impacts of warming, along with more direct impacts such as those from fishing, is critical in providing opportunities for species to adapt to environmental change and to preserve this unique ecosystem.

Fishes in the mesopelagic zone (200–1000 m) have recently been highlighted for potential exploitation. Here we assess global phylogeography in Maurolicus, the Pearlsides, an ecologically important group. We obtained new sequences from mitochondrial COI and nuclear ITS-2 from multiple locations worldwide, representing 10 described species plus an unknown central South Pacific taxon. Phylogenetic analyses identified five geographically distinct groupings, three of which comprise multiple described species. Species delimitation analyses suggest these may represent four species. Maurolicus muelleri and M. australis are potentially a single species, although as no shared haplotypes are found between the two disjunct groups, we suggest maintenance of these as two species. Maurolicus australis is a predominantly southern hemisphere species found in the Pacific, Indian and southern South Atlantic Oceans, comprising five previously allopatric species. M. muelleri (previously two species) is distributed in the North Atlantic and Mediterranean Sea. Maurolicus weitzmani (previously two species) inhabits the eastern equatorial Atlantic, Gulf of Mexico and western North and South Atlantic. Maurolicus mucronatus is restricted to the Red Sea. No Maurolicus have previously been reported in the central South Pacific but we have identified a distinct lineage from this region, which forms a sister group to Maurolicus from the Red Sea.

The majority of rocky reef fishes have complex life cycles, involving transition from a pelagic to a benthic environment. This means that as they grow, their morphology, behaviour and feeding habits must change. Therefore, shape changes occurring during early development of these fishes will be related to diet changes. The clingfish Sicyases sanguineus was selected for this study, because it displays a noticeable variation in shape from pelagic larvae to juvenile stage, and it is expected that diet composition will change as well. The pattern of shape changes was studied using geometric morphometrics. A set of 9 landmarks were digitized in 159 larval and juvenile fish and the same specimens were used for gut content analysis. Allometric growth was most prominent early in the ontogeny, from 4 to 12 mm. Morphology changed from a thin and hydrodynamic shape to a more robust and deeper body prior to settlement. The diet of the clingfish during larval stages showed preferences for a variety of copepod stages. As individual grows the ingested prey volume increases, but not the number and width of prey. A partial least square analysis showed low covariance between shape changes and diet composition changes in prey number and volume, suggesting that the two processes were temporally decoupled. The biggest shape changes, a lengthening of the visceral cavity and a flattening of the head, occurred up to 12 mm standard length, while the largest feeding differentiation, shifting from copepods to microalgae, occurred after 16 mm. Results suggest that shape changes precede trophic changes in this clingfish species during the transition from a pelagic to a benthic habitat.

Very little is known about the ecology and biology of the smallest marine vertebrates, fishes in the genus Schindleria. Even though over half of named Schindleria species have been identified in the Red Sea, the collection of only very few specimens has been documented. Here, we assessed abundance patterns of nearly two thousand Red Sea long dorsal fin (LDF) adults and found evidence for putative seasonal and spatial differences, likely related to differing habitat and environmental conditions. The highest abundances were outside local seasonal temperature extremes and decoupled from peaks of coral reef fish recruitment. We also found evidence for global trends in abundances related to lunar cycles using our Red Sea data and that from a recently published large collection of specimens from the DANA Expedition (1928–1930). The abundance of adult LDF Schindleria in relation to lunar phases differed significantly, with most Schindleria caught outside the full moon, and mostly during the new moon in the Red Sea and the 3rd quarter moon in the DANA collection. We further suggest that the abundances of Schindleria at coral reefs may be related to reproductive cycles and that these cycles may be timed with the moon as back-calculations of hatch dates from otoliths from the Red Sea significantly resulted after the new moon, making Schindleria the fastest-lived coral reef fish with the shortest generation times. Schindleria could be the most numerous coral reef fish in the world, for which we encourage increased research.

Southern Patagonian ecosystems are characterized by high environmental heterogeneity. Within this context, Inútil Bay exhibits a complex geomorphology and only fragmentary information on its biodiversity, despite a long history of resource exploitation and increasing human pressures. The objective of this study was to establish a baseline of biodiversity focusing on three key trophic components: zooplankton, megabenthos, and macrobenthos. Samples were collected using both traditional and non-invasive methods, including a bongo net, ROV, and Van Veen grab. A total of 239 taxa were identified, comprising 32 zooplankton species, 61 megabenthic taxa, and 146 macrobenthic taxa. Alpha diversity indices revealed a spatial gradient, with higher mixed-level taxonomic richness near the Whiteside Channel. In contrast to patterns observed in zooplankton and megabenthos, the macrofauna showed significant differences between assemblages at stations located inside and outside the bay. Moreover, a low representation of meroplankton was recorded compared to the high abundance of adult benthic invertebrates. Overall, these results provide a biodiversity baseline, underscore the ecological vulnerability of Inútil Bay, and support its recognition as a priority area for conservation.

Macro- and micro-environmental factors modulate parasite loads in fish, determining parasitic abundances, diversity, and interaction dynamics. In this study, seasonal variations in larval ectoparasites on fish larvae in the northern Humboldt Current System (HCS) were evaluated using a delta-gamma generalized linear model to predict their occurrence frequencies. Fish larvae were collected from two nearshore areas during austral spring–summer and autumn–winter. Only five (of 38) larval fish species were parasitized by copepods: Gobiesox marmoratus , Ophiogobius jenynsi , Helcogrammoides cunninghami, Myxodes sp., and Auchenionchus crinitus . A binomial model showed that the presence/absence of parasitized fish larvae varied among the fish species and their larval abundances, while a positive delta-gamma model showed that ectoparasite frequency varied among the seasons and fish species. Seasonal variations in parasitized fish larvae frequency could be associated with host and parasite reproductive processes, which are related to oceanographic features responsible for larval retention and subsequent higher infestation probabilities. Host length was positively correlated with ectoparasite length, suggesting early infection and combined growth until the detachment of the ectoparasite. Our results suggest that infestation patterns in larval fish species can be identified using delta-gamma models and that they respond to local (retention) and high-scale (HCS) processes.

Temperate mesophotic reef ecosystems (TMREs) are among the least known marine habitats. Information on their diversity and ecology is geographically and temporally scarce, especially in highly productive large upwelling ecosystems. Lack of information remains an obstacle to understanding the importance of TMREs as habitats, biodiversity reservoirs and their connections with better‐studied shallow reefs. Here, we use environmental DNA (eDNA) from water samples to characterize the community composition of TMREs on the central Chilean coast, generating the first baseline for monitoring the biodiversity of these habitats. We analyzed samples from two depths (30 and 60 m) over four seasons (spring, summer, autumn, and winter) and at two locations approximately 16 km apart. We used a panel of three metabarcodes, two that target all eukaryotes (18S rRNA and mitochondrial COI) and one specifically targeting fishes (16S rRNA). All panels combined encompassed eDNA assigned to 42 phyla, 90 classes, 237 orders, and 402 families. The highest family richness was found for the phyla Arthropoda, Bacillariophyta, and Chordata. Overall, family richness was similar between depths but decreased during summer, a pattern consistent at both locations. Our results indicate that the structure (composition) of the mesophotic communities varied predominantly with seasons. We analyzed further the better‐resolved fish assemblage and compared eDNA with other visual methods at the same locations and depths. We recovered eDNA from 19 genera of fish, six of these have also been observed on towed underwater videos, while 13 were unique to eDNA. We discuss the potential drivers of seasonal differences in community composition and richness. Our results suggest that eDNA can provide valuable insights for monitoring TMRE communities but highlight the necessity of completing reference DNA databases available for this region. Here, environmental DNA (eDNA) was used to characterize temperate mesophotic reef ecosystems (TMREs) along the central Chilean coast, shedding light on their biodiversity. Through eDNA analysis at different depths and seasons, we identified 42 phyla and 237 orders, with Arthropoda, Bacillariophyta, and Chordata being the most diverse. Notably, TMRE community composition varied seasonally, particularly in summer, emphasizing the potential of eDNA for monitoring these ecosystems and the need to enhance reference DNA databases for the region.

This study evaluates the swimming behaviour of pre-settled fish larvae of the triplefin Helcogrammoides chil­ensis (Tripterygiidae) in relation to local environmental conditions. Larval aggregations were recorded on rocky reefs off central Chile during the austral summer of 2014 and 2016 to describe their swimming behaviour (i.e. solitary, shoaling, schooling) and relate it to in situ water temperature, wind stress, wind speed and turbulence. Shoaling and solitary behaviour were influenced only by wind-induced turbulence in 2014 and by seawater temperature and wind stress in 2016. Schooling behaviour was not influenced by any of the environmental variables. In situ swimming behaviour of fish larvae has been little investigated, and this work proposes a non-invasive in situ methodology for studying fish larval behaviour.

Two species of sandperch (Pinguipedidae: Perciformes), Prolatilus jugularis and Pinguipes chilensis, inhabit the coastal waters of the South Pacific. Both species have pelagic larvae with similar morphology, but their diet preferences are unknown. Diet composition, feeding success, trophic niche breadth and dietary overlap were described during larval stages for both species. In the austral spring, larval P. jugularis (3.83-10.80 mm standard length [SL]) and P. chilensis (3.49-7.71 mm SL) during their first month of life had a high feeding incidence ( > 70%) and fed mostly on copepod nauplii ( > 80% IRI), Rhincalanus nasutus metanauplii and Paracalanus indicus copepodites. The number of prey ingested was low (mean: 4-5 prey per gut) and independent of larval size; total prey volume and maximum prey width increased as larvae grew. Mouth opening and ingested prey were greater in larval P. jugularis than in P. chilensis, leading to significant differences in prey composition among larval species, in terms of prey number and volume. Pearre’s trophic niche breadth was narrow for both species (0.159±0.07 for P. jugularis; 0.156±0.03 for P. chilensis) and independent of larval size. Dietary overlap was high inter- and intra-species in larvae with a mouth gape < 900 μm. These results suggest the relative importance of both larval species as primary consumers of the pelagic web in nearshore environments of rocky temperate areas.