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"Larsen, Linda Johnson"
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Eating clean for dummies
Used as a way of life, clean eating can improve overall health, prevent disease, increase energy and stabilize moods. Provides the reader with an-easy-to-follow guide to eliminate processed foods from one's diet and improve one's health and budget by eating clean-- Source other than Library of Congress.
Oblique line scan illumination enables expansive, accurate and sensitive single-protein measurements in solution and in living cells
2025
An ideal tool for the study of cellular biology would enable the measure of molecular activity nondestructively within living cells. Single-molecule localization microscopy (SMLM) techniques, such as single-molecule tracking (SMT), enable in situ measurements in cells but have historically been limited by a necessary tradeoff between spatiotemporal resolution and throughput. Here we address these limitations using oblique line scan (OLS), a robust single-objective light-sheet-based illumination and detection modality that achieves nanoscale spatial resolution and sub-millisecond temporal resolution across a large field of view. We show that OLS can be used to capture protein motion up to 14 μm
2
s
−1
in living cells. We further extend the utility of OLS with in-solution SMT for single-molecule measurement of ligand–protein interactions and disruption of protein–protein interactions using purified proteins. We illustrate the versatility of OLS by showcasing two-color SMT, STORM and single-molecule fluorescence recovery after photobleaching. OLS paves the way for robust, high-throughput, single-molecule investigations of protein function required for basic research, drug screening and systems biology studies.
Oblique line scan microscopy achieves nanoscale spatial and sub-millisecond temporal resolution across a large field of view, enabling improved and robust single-molecule biophysical measurements and single-molecule tracking in both cells and solution.
Journal Article
Prolonged suppression of ecosystem carbon dioxide uptake after an anomalously warm year
by
Larsen, Jessica D
,
von Nagy, Christopher
,
Coulombe, William G
in
Animal and plant ecology
,
Animal, plant and microbial ecology
,
Anthropogenic factors
2008
Ecosystem CO
2
uptake: Prolonged after-effects of an extremely warm year
Earth's terrestrial ecosystems strongly modulate levels of CO2 in the atmosphere through seasonal changes in net plant productivity (CO2 absorbance) and soil microbial respiration (CO
2
release). It has been known for decades that these processes respond to seasonal shifts in climate, especially temperature, resulting in the zig-zag form of the global CO
2
curve, but the data necessary to quantify impacts of a single climate variable at interannual timescales have been lacking. A four-year study using intact tallgrass prairie ecosystems in controlled environment chambers (like the one on the cover, showing plant communities a few weeks after summer mowing) now provides some of the missing data. The results show that one anomalously warm year reduces net ecosystem CO
2
exchange for that year and the year after. Carbon sequestration in ecosystems exposed to high temperatures for a year is a third of that in controls. These findings suggest that more frequent anomalously warm years, a possible consequence of rising anthropogenic CO
2
levels, could lead to a sustained decrease in CO
2
uptake by terrestrial ecosystems.
Terrestrial ecosystems control carbon dioxide fluxes to and from the atmosphere
1
,
2
through photosynthesis and respiration, a balance between net primary productivity and heterotrophic respiration, that determines whether an ecosystem is sequestering carbon or releasing it to the atmosphere. Global
1
,
3
,
4
,
5
and site-specific
6
data sets have demonstrated that climate and climate variability influence biogeochemical processes that determine net ecosystem carbon dioxide exchange (NEE) at multiple timescales. Experimental data necessary to quantify impacts of a single climate variable, such as temperature anomalies, on NEE and carbon sequestration of ecosystems at interannual timescales have been lacking. This derives from an inability of field studies to avoid the confounding effects of natural intra-annual and interannual variability in temperature and precipitation. Here we present results from a four-year study using replicate 12,000-kg intact tallgrass prairie monoliths located in four 184-m
3
enclosed lysimeters
7
. We exposed 6 of 12 monoliths to an anomalously warm year in the second year of the study
8
and continuously quantified rates of ecosystem processes, including NEE. We find that warming decreases NEE in both the extreme year and the following year by inducing drought that suppresses net primary productivity in the extreme year and by stimulating heterotrophic respiration of soil biota in the subsequent year. Our data indicate that two years are required for NEE in the previously warmed experimental ecosystems to recover to levels measured in the control ecosystems. This time lag caused net ecosystem carbon sequestration in previously warmed ecosystems to be decreased threefold over the study period, compared with control ecosystems. Our findings suggest that more frequent anomalously warm years
9
, a possible consequence of increasing anthropogenic carbon dioxide levels
10
, may lead to a sustained decrease in carbon dioxide uptake by terrestrial ecosystems.
Journal Article
Epidemic Meningococcemia and Purpura Fulminans with Induced Protein C Deficiency
1993
Patients with epidemic infections caused by Neisseria meningitidis serogroup C were studied to assess the relationship of abnormal coagulation parameters to prognosis. Patients were categorized into stages within the first hour of observation according to severity of illness. During the epidemic years 1986 through 1991, 113 patients with bacteriologically proven N. meningitidis infection were observed, 15 of whom died. Purpura fulminans was seen in 28 patients, of whom 14 (50%) died. Among the 14 surviving patients who had purpura fulminans, 10 suffered gangrene with deforming autoamputation secondary to the dermal microvascular thrombosis and hemorrhagic necrosis. Evaluation of the induced diffuse intravascular coagulation in 59 patients included studies of the naturally occurring anticoagulants, focusing on protein C and protein S. The magnitude of the declining levels of protein C, the degree of thrombocytopenia, and the presence of fibrin split products are directly related to the clinical severity of the illness (P = .0053). Thus, in individuals with severe disease expression, the risk of purpura fulminans with death or deformity was significantly increased when the platelet count was <50,000 cells/mm3 (P = .0001) and protein C levels were low (P = .0158). The immaturity of the protein C system in children who are <4 years of age may contribute to the rapid and more frequent pathogenesis of purpura fulminans. Therapy directed at replacement of the naturally occurring anticoagulants, such as protein C, may ultimately improve the prognosis for individuals with purpura fulminans.
Journal Article
Oblique Line Scan Illumination Enables Expansive, Accurate and Sensitive Single Protein Measurements in Solution and in Living Cells
by
Maite Bradley Silva
,
Klammer, Aaron A
,
Lin, Kevin
in
Adaptability
,
Biophysics
,
Drug screening
2023
Single-molecule localization microscopy (SMLM) techniques, such as single-molecule tracking (SMT), enable in situ measurements in cells from which data-rich metrics can be extracted. SMT has been successfully applied to a variety of biological questions and model systems, aiming to unravel the spatiotemporal regulation of molecular mechanisms that govern protein function, downstream pathway effects, and cellular function. While powerful, SMLM often suffers from low throughput and illumination inhomogeneity, along with microscope and user-induced technical biases. Due to technical limitations in scaling SMLM techniques, a tradeoff between spatiotemporal resolution and throughput has been made historically, restricting broad application of these technologies. Here we address these limitations using Oblique Line Scan (OLS), a robust single-objective light-sheet based illumination and detection modality that achieves nanoscale spatial resolution and sub-millisecond temporal resolution across a 250 x 190 μm field of view. We demonstrate OLS-enabled SMT on Halo-Tagged proteins in living cells capturing protein motion up to 14 μm2 /s. By exploiting the adaptability of the acquisition frame rate and the improved rejection of out of focus light, we extend the utility of OLS beyond cellular compartments with in-solution SMT (isSMT) for single-molecule measurement of ligand-protein interactions and disruption of protein-protein interactions (PPI). We illustrate the versatility of OLS by showcasing two-color SMT, STORM, and single molecule fluorescence recovery after photobleaching (FRAP). OLS expands the range of SMLM applications and paves the way for robust, high-throughput single-molecule investigations of protein dynamics required for drug screening and systems biology studies, both in cells and in solution.Competing Interest StatementThe authors are employees and/or shareholders of Eikon Therapeutics.