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result(s) for
"Lee-Yaw, Julie A."
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Species distribution models rarely predict the biology of real populations
2022
Species distribution models (SDMs) are widely used in ecology. In theory, SDMs capture (at least part of) species' ecological niches and can be used to make inferences about the distribution of suitable habitat for species of interest. Because habitat suitability is expected to influence population demography, SDMs have been used to estimate a variety of population parameters, from occurrence to genetic diversity. However, a critical look at the ability of SDMs to predict independent data across different aspects of population biology is lacking. Here, we systematically reviewed the literature, retrieving 201 studies that tested predictions from SDMs against independent assessments of occurrence, abundance, population performance, and genetic diversity. Although there is some support for the ability of SDMs to predict occurrence (~53% of studies depending on how support was assessed), the predictive performance of these models declines progressively from occurrence to abundance, to population mean fitness, to genetic diversity. At the same time, we observed higher success among studies that evaluated performance for single versus multiple species, pointing to a possible publication bias. Thus, the limited accuracy of SDMs reported here may reflect the best‐case scenario. We discuss the limitations of these models and provide specific recommendations for their use for different applications going forward. However, we emphasize that predictions from SDMs, especially when used to inform conservation decisions, should be treated as hypotheses to be tested with independent data rather than as stand‐ins for the population parameters we seek to know.
Journal Article
An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus)
by
Christopher J. Grassa
,
Julie A. Lee-Yaw
,
Loren H. Rieseberg
in
Annual
,
biogeography
,
Biological evolution
2019
Cytonuclear discordance is commonly observed in phylogenetic studies, yet few studies have tested whether these patterns reflect incomplete lineage sorting or organellar introgression.
Here, we used whole-chloroplast sequence data in combination with over 1000 nuclear single-nucleotide polymorphisms to clarify the extent of cytonuclear discordance in wild annual sunflowers (Helianthus), and to test alternative explanations for such discordance.
Our phylogenetic analyses indicate that cytonuclear discordance is widespread within this group, both in terms of the relationships among species and among individuals within species. Simulations of chloroplast evolution show that incomplete lineage sorting cannot explain these patterns in most cases. Instead, most of the observed discordance is better explained by cytoplasmic introgression. Molecular tests of evolution further indicate that selection may have played a role in driving patterns of plastid variation – although additional experimental work is needed to fully evaluate the importance of selection on organellar variants in different parts of the geographic range.
Overall, this study represents one of the most comprehensive tests of the drivers of cytonuclear discordance and highlights the potential for gene flow to lead to extensive organellar introgression in hybridizing taxa.
Journal Article
Expanding, shifting and shrinking
by
Lee-Yaw, Julie A.
,
Hargreaves, Anna L.
,
Sunday, Jennifer M.
in
altitude
,
biocenosis
,
Climate change
2018
Aim Species are responding to climate warming by shifting their distributions toward historically cooler regions, but the degree to which expansions at cool range limits are balanced by contractions at warm limits is unknown. We synthesized published data documenting shifts at species’ warm versus cool range limits along elevational gradients to (a) test classic ecological theory that predicts temperature more directly influences species’ cool range limits than their warm range limits, and (b) determine how warming‐associated shifts have changed the extent and area of species’ elevational distributions. Location Global. Time period 1802–2012. Major taxa studied Vascular plants, endotherms, ectotherms. Methods We compiled a dataset of 975 species from 32 elevational gradients for which range shifts have been measured at both warm and cool range limits. We compared the magnitude and variance of shifts at species’ warm versus cool limits, and quantified how range shifts have impacted species’ elevational extents and areas. Results On average species have shifted upslope associated with temperature increases at both warm and cool limits (warm limit: 92 ± 455 m/C; cool limit: 131 ± 465 m/C; overall mean ± SD). There was no systematic difference in the magnitude or variance of shifts at warm versus cool limits and thus no indication that cool limits are more directly controlled by temperature. Species’ elevational extents and available area significantly decreased for mountaintop species. Main conclusions Our results do not support the long‐standing hypothesis that cool limits are more sensitive or responsive to temperature. We find that, across the globe, mountaintop species’ ranges are significantly shrinking as they shift upslope, supporting predictions that high elevation species are especially vulnerable to temperature increases. Our synthesis highlights the extreme variation in species’ distributional responses to warming, which may indicate that biotic interactions play a more prominent role in setting range limits than previously thought.
Journal Article
Eco-evolutionary dynamics of range expansion
by
Lee-Yaw, Julie A.
,
Shaw, Allison K.
,
Brown, Carissa D.
in
Biological Evolution
,
biological invasion
,
Concepts & Synthesis
2020
Understanding the movement of species’ ranges is a classic ecological problem that takes on urgency in this era of global change. Historically treated as a purely ecological process, range expansion is now understood to involve eco-evolutionary feedbacks due to spatial genetic structure that emerges as populations spread.We synthesize empirical and theoretical work on the eco-evolutionary dynamics of range expansion, with emphasis on bridging directional, deterministic processes that favor evolved increases in dispersal and demographic traits with stochastic processes that lead to the random fixation of alleles and traits. We develop a framework for understanding the joint influence of these processes in changing the mean and variance of expansion speed and its underlying traits. Our synthesis of recent laboratory experiments supports the consistent role of evolution in accelerating expansion speed on average, and highlights unexpected diversity in how evolution can influence variability in speed: results not well predicted by current theory. We discuss and evaluate support for three classes of modifiers of eco-evolutionary range dynamics (landscape context, trait genetics, and biotic interactions), identify emerging themes, and suggest new directions for future work in a field that stands to increase in relevance as populations move in response to global change.
Journal Article
Adaptation across geographic ranges is consistent with strong selection in marginal climates and legacies of range expansion
by
Lee-Yaw, Julie A.
,
Hargreaves, Anna L.
,
Angert, Amy L.
in
Adaptation
,
Evolution & development
,
Expansion load
2021
Every species experiences limits to its geographic distribution. Some evolutionary models predict that populations at range edges are less well adapted to their local environments due to drift, expansion load, or swamping gene flow from the range interior. Alternatively, populations near range edges might be uniquely adapted to marginal environments. In this study, we use a database of transplant studies that quantify performance at broad geographic scales to test how local adaptation, site quality, and population quality change from spatial and climatic range centers toward edges. We find that populations from poleward edges perform relatively poorly, both on average across all sites (15% lower population quality) and when compared to other populations at home (31% relative fitness disadvantage), consistent with these populations harboring high genetic load. Populations from equatorial edges also perform poorly on average (18% lower population quality) but, in contrast, outperform foreign populations (16% relative fitness advantage), suggesting that populations from equatorial edges have strongly adapted to unique environments. Finally, we find that populations from sites that are thermally extreme relative to the species’ niche demonstrate strong local adaptation, regardless of their geographic position. Our findings indicate that both nonadaptive processes and adaptive evolution contribute to variation in adaptation across species’ ranges.
Journal Article
Environmental marginality and geographic range limits
by
Marco Fracassetti
,
Julie A. Lee-Yaw
,
Yvonne Willi
in
Arabidopsis
,
Arabidopsis lyrata
,
Biodiversity
2018
Understanding the factors that govern the distribution of species is a central goal of evolutionary ecology. It is commonly assumed that geographic range limits reflect ecological niche limits and that species experience increasingly marginal conditions towards the edge of their ranges. Using spatial data and ecological niche models we tested these hypotheses in Arabidopsis lyrata. Specifically, we asked whether range limits coincide with predicted niche limits in this system and whether the suitability of sites declines towards the edge of the species’ range in North America. We further explored patterns of environmental change towards the edge of the range and asked whether genome-wide patterns of genetic diversity decline with increasing peripherality and environmental marginality. Our results suggest that latitudinal range limits coincide with niche limits. Populations experienced increasingly marginal environments towards these limits – though patterns of environmental change were more complex than most theoretical models for range limits assume. Genomic diversity declined towards the edge of the species’ range and with increasing distance from the estimated centre of the species’ niche in environmental space, but not with the suitability of sites based on niche model predictions. Thus while latitudinal range limits in this system are broadly associated with niche limits, the link between environmental conditions and genetic diversity (and thus the adaptive potential of populations) is less clear.
Journal Article
Pelagic fish predation is stronger at temperate latitudes than near the equator
by
Lee-Yaw, Julie A.
,
Schluter, Dolph
,
Rolland, Jonathan
in
631/158/670
,
631/158/851
,
631/158/853
2020
Species interactions are widely thought to be strongest in the tropics, potentially contributing to the greater number of species at lower latitudes. Yet, empirical tests of this “biotic interactions” hypothesis remain limited and often provide mixed results. Here, we analyze 55 years of catch per unit effort data from pelagic longline fisheries to estimate the strength of predation exerted by large predatory fish in the world’s oceans. We test two central tenets of the biotic interactions hypothesis: that predation is (1) strongest near the equator, and (2) positively correlated with species richness. Counter to these predictions, we find that predation is (1) strongest in or near the temperate zone and (2) negatively correlated with oceanic fish species richness. These patterns suggest that, at least for pelagic fish predation, common assumptions about the latitudinal distribution of species interactions do not apply, thereby challenging a leading explanation for the latitudinal gradient in species diversity.
One hypothesis for the latitudinal diversity gradient is based on an assumption of stronger species interactions at lower latitudes. Here, Roesti et al. estimate pelagic fish predation from long-term fishing records and find evidence of stronger predation at higher latitudes and with lower fish species richness.
Journal Article
Study extent influences the predictions and performance of species distribution models: a case study of six amphibian species at the edge of their geographic distributions in western Canada
by
Lee-Yaw, Julie A
,
Finn, Kaegan J
,
Bergman, Jayna C
in
Aquatic reptiles
,
Biodiversity
,
Calibration
2024
Species distribution models (SDMs) are often generated to inform conservation plans. When developed for use in spatially-restricted areas, such as protected areas, investigators often make arbitrary decisions as to the geographic extent from which locality data to inform the model are drawn (i.e. the “study extent” of the model). However, there has been little attention to the impacts of this decision on model predictions. Here we explore the impacts of study extent on SDM predictions of (i) suitable habitat for or (ii) the actual occurrence of individual species, as well as on (iii) the identification of sites that could support multiple species (i.e. from stacked-SDMs). Focusing on six amphibian species of conservation concern at the edge of their range in western Canada, we generated SDMs using range-wide, ecoregion, and political study extents and compared the alternative predictions for each species in one of two national parks of interest. Differences in model predictions were substantial, with precent agreement among models developed with different extents as low as 10% for one of the species. Study extent also influenced the ability of models to predict independent occurrence at the edge of the range, although most models performed poorly in this regard (AUC < 0.7). Finally, study extent influenced stacked predictions, suggesting that uncertainty in individual species predictions muddies interpretation of SDMs at the community-level. Importantly, results varied across species and region, precluding simple recommendations for choosing a study extent; Instead, uncertainty arising from this decision should be quantified before using SDMs in conservation planning.
Journal Article
Latitudinal gradients in seed predation persist in urbanized environments
2024
Urbanization is creating a new global biome, in which cities and suburbs around the world often resemble each other more than the local natural areas they replaced. But while urbanization can profoundly affect ecology at local scales, we know little about whether it disrupts large-scale ecological patterns. Here we test whether urbanization disrupts a macroecological pattern central to ecological and evolutionary theory: the increase in seed predation intensity from high to low latitudes. Across 14,000 km of latitude spanning the Americas, we compared predation intensity on two species of standardized experimental seeds in urbanized and natural areas. In natural areas, predation on both seed species increased fivefold from high latitudes to the tropics, one of the strongest latitudinal gradients in species interactions documented so far. Surprisingly, latitudinal gradients in predation were equally strong in urbanized areas despite significant habitat modification. Nevertheless, urbanization did affect seed predation. Compared with natural areas, urbanization reduced overall predation and vertebrate predation, did not affect predation by invertebrates in general, and increased predation by ants. Our results show that macroecological patterns in predation intensity can persist in urbanized environments, even as urbanization alters the relative importance of predators and potentially the evolutionary trajectory of urban populations.
Seed predation increases from the Arctic to the tropics, but it is unknown whether urbanization disrupts this latitudinal pattern. An experimental study conducted across the Americas shows that the latitudinal gradient in predation holds in urban areas, even though total seed predation is reduced.
Journal Article