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19 result(s) for "Leech, Gavin"
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Seasonal variation in SARS-CoV-2 transmission in temperate climates: A Bayesian modelling study in 143 European regions
Although seasonal variation has a known influence on the transmission of several respiratory viral infections, its role in SARS-CoV-2 transmission remains unclear. While there is a sizable and growing literature on environmental drivers of COVID-19 transmission, recent reviews have highlighted conflicting and inconclusive findings. This indeterminacy partly owes to the fact that seasonal variation relates to viral transmission by a complicated web of causal pathways, including many interacting biological and behavioural factors. Since analyses of specific factors cannot determine the aggregate strength of seasonal forcing, we sidestep the challenge of disentangling various possible causal paths in favor of a holistic approach. We model seasonality as a sinusoidal variation in transmission and infer a single Bayesian estimate of the overall seasonal effect. By extending two state-of-the-art models of non-pharmaceutical intervention (NPI) effects and their datasets covering 143 regions in temperate Europe, we are able to adjust our estimates for the role of both NPIs and mobility patterns in reducing transmission. We find strong seasonal patterns, consistent with a reduction in the time-varying reproduction number R ( t ) (the expected number of new infections generated by an infectious individual at time t ) of 42.1% (95% CI: 24.7%—53.4%) from the peak of winter to the peak of summer. These results imply that the seasonality of SARS-CoV-2 transmission is comparable in magnitude to the most effective individual NPIs but less than the combined effect of multiple interventions.
Mask wearing in community settings reduces SARS-CoV-2 transmission
The effectiveness of mask wearing at controlling severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission has been unclear. While masks are known to substantially reduce disease transmission in healthcare settings [D. K. Chu et al., Lancet 395, 1973–1987 (2020); J. Howard et al., Proc. Natl. Acad. Sci. U.S.A. 118, e2014564118 (2021); Y. Cheng et al., Science eabg6296 (2021)], studies in community settings report inconsistent results [H. M. Ollila et al., medRxiv (2020); J. Brainard et al., Eurosurveillance 25, 2000725 (2020); T. Jefferson et al., Cochrane Database Syst. Rev. 11, CD006207 (2020)]. Most such studies focus on how masks impact transmission, by analyzing how effective government mask mandates are. However, we find that widespread voluntary mask wearing, and other data limitations, make mandate effectiveness a poor proxy for mask-wearing effectiveness. We directly analyze the effect of mask wearing on SARS-CoV-2 transmission, drawing on several datasets covering 92 regions on six continents, including the largest survey of wearing behavior (n = 20 million) [F. Kreuter et al., https://gisumd.github.io/COVID-19-API-Documentation (2020)]. Using a Bayesian hierarchical model, we estimate the effect of mask wearing on transmission, by linking reported wearing levels to reported cases in each region, while adjusting for mobility and nonpharmaceutical interventions (NPIs), such as bans on large gatherings. Our estimates imply that the mean observed level of mask wearing corresponds to a 19% decrease in the reproduction number R. We also assess the robustness of our results in 60 tests spanning 20 sensitivity analyses. In light of these results, policy makers can effectively reduce transmission by intervening to increase mask wearing.
Understanding the effectiveness of government interventions against the resurgence of COVID-19 in Europe
European governments use non-pharmaceutical interventions (NPIs) to control resurging waves of COVID-19. However, they only have outdated estimates for how effective individual NPIs were in the first wave. We estimate the effectiveness of 17 NPIs in Europe’s second wave from subnational case and death data by introducing a flexible hierarchical Bayesian transmission model and collecting the largest dataset of NPI implementation dates across Europe. Business closures, educational institution closures, and gathering bans reduced transmission, but reduced it less than they did in the first wave. This difference is likely due to organisational safety measures and individual protective behaviours—such as distancing—which made various areas of public life safer and thereby reduced the effect of closing them. Specifically, we find smaller effects for closing educational institutions, suggesting that stringent safety measures made schools safer compared to the first wave. Second-wave estimates outperform previous estimates at predicting transmission in Europe’s third wave. European governments control resurging waves of COVID-19 using nonpharmaceutical interventions. Here, the authors estimate the effectiveness of 17 interventions in Europe’s second wave, and analyse differences to the first wave as well as implications for the future of the pandemic.
A dataset of non-pharmaceutical interventions on SARS-CoV-2 in Europe
During the second half of 2020, many European governments responded to the resurging transmission of SARS-CoV-2 with wide-ranging non-pharmaceutical interventions (NPIs). These efforts were often highly targeted at the regional level and included fine-grained NPIs. This paper describes a new dataset designed for the accurate recording of NPIs in Europe’s second wave to allow precise modelling of NPI effectiveness. The dataset includes interventions from 114 regions in 7 European countries during the period from the 1st August 2020 to the 9th January 2021. The paper includes NPI definitions tailored to the second wave following an exploratory data collection. Each entry has been extensively validated by semi-independent double entry, comparison with existing datasets, and, when necessary, discussion with local epidemiologists. The dataset has considerable potential for use in disentangling the effectiveness of NPIs and comparing the impact of interventions across different phases of the pandemic. Measurement(s) Government non-pharmaceutical interventions against Covid-19 Technology Type(s) Interpretation by researchers Sample Characteristic - Organism Homo sapiens
Mask wearing in community settings reduces SARS-CoV-2 transmission
The effectiveness of mask wearing at controlling severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission has been unclear. While masks are known to substantially reduce disease transmission in healthcare settings [D. K. Chu et al., Lancet 395, 1973–1987 (2020); J. Howard et al., Proc. Natl. Acad. Sci. U.S.A. 118, e2014564118 (2021); Y. Cheng et al., Science eabg6296 (2021)], studies in community settings report inconsistent results [H. M. Ollila et al., medRxiv (2020); J. Brainard et al., Eurosurveillance 25, 2000725 (2020); T. Jefferson et al., Cochrane Database Syst. Rev. 11, CD006207 (2020)]. Most such studies focus on how masks impact transmission, by analyzing how effective government mask mandates are. However, we find that widespread voluntary mask wearing, and other data limitations, make mandate effectiveness a poor proxy for mask-wearing effectiveness. We directly analyze the effect of mask wearing on SARS-CoV-2 transmission, drawing on several datasets covering 92 regions on six continents, including the largest survey of wearing behavior (n= 20 million) [F. Kreuter et al., https://gisumd.github.io/COVID-19-API-Documentation (2020)]. Using a Bayesian hierarchical model, we estimate the effect of mask wearing on transmission, by linking reported wearing levels to reported cases in each region, while adjusting for mobility and nonpharmaceutical interventions (NPIs), such as bans on large gatherings. Our estimates imply that the mean observed level of mask wearing corresponds to a 19% decrease in the reproduction number R. We also assess the robustness of our results in 60 tests spanning 20 sensitivity analyses. In light of these results, policy makers can effectively reduce transmission by intervening to increase mask wearing.
Massively Parallel Reweighted Wake-Sleep
Reweighted wake-sleep (RWS) is a machine learning method for performing Bayesian inference in a very general class of models. RWS draws \\(K\\) samples from an underlying approximate posterior, then uses importance weighting to provide a better estimate of the true posterior. RWS then updates its approximate posterior towards the importance-weighted estimate of the true posterior. However, recent work [Chattergee and Diaconis, 2018] indicates that the number of samples required for effective importance weighting is exponential in the number of latent variables. Attaining such a large number of importance samples is intractable in all but the smallest models. Here, we develop massively parallel RWS, which circumvents this issue by drawing \\(K\\) samples of all \\(n\\) latent variables, and individually reasoning about all \\(K^n\\) possible combinations of samples. While reasoning about \\(K^n\\) combinations might seem intractable, the required computations can be performed in polynomial time by exploiting conditional independencies in the generative model. We show considerable improvements over standard \"global\" RWS, which draws \\(K\\) samples from the full joint.
Decision trees compensate for model misspecification
The best-performing models in ML are not interpretable. If we can explain why they outperform, we may be able to replicate these mechanisms and obtain both interpretability and performance. One example are decision trees and their descendent gradient boosting machines (GBMs). These perform well in the presence of complex interactions, with tree depth governing the order of interactions. However, interactions cannot fully account for the depth of trees found in practice. We confirm 5 alternative hypotheses about the role of tree depth in performance in the absence of true interactions, and present results from experiments on a battery of datasets. Part of the success of tree models is due to their robustness to various forms of mis-specification. We present two methods for robust generalized linear models (GLMs) addressing the composite and mixed response scenarios.
Soft Contamination Means Benchmarks Test Shallow Generalization
If LLM training data is polluted with benchmark test data, then benchmark performance gives biased estimates of out-of-distribution (OOD) generalization. Typical decontamination filters use n-gram matching which fail to detect semantic duplicates: sentences with equivalent (or near-equivalent) content that are not close in string space. We study this soft contamination of training data by semantic duplicates. Among other experiments, we embed the Olmo3 training corpus and find that: 1) contamination remains widespread, e.g. we find semantic duplicates for 78% of CodeForces and exact duplicates for 50% of ZebraLogic problems; 2) including semantic duplicates of benchmark data in training does improve benchmark performance; and 3) when finetuning on duplicates of benchmark datapoints, performance also improves on truly-held-out datapoints from the same benchmark. We argue that recent benchmark gains are thus confounded: the prevalence of soft contamination means gains reflect both genuine capability improvements and the accumulation of test data and effective test data in growing training corpora.
How much technical talent is there? A systematic estimate of the ML research pool among 3 million consultants
We identify a substantial pool of technically competent ML research talent (in the low thousands) in companies which offer consulting in machine learning. We systematically searched the internet, global business databases, and conference/paper affiliations for ML consulting firms. Employee LinkedIn resumes were then scored by keyword filters and large-language-model (LLM) classifiers; these signals were combined in a bootstrap probit model to estimate technical ML research talent per firm. A subset of companies also completed a 3-day research and engineering work trial. We screened 2121 organizations and found 403 offering broad ML consulting. Our 50th percentile aggregate estimate of 'highly technical' ML research talent across these organizations was 1121 (80% CI: 252-3165) -- i.e. twice as many as all alumni of the MATS training program. For our work trial 97 companies were approached, 20 applied, 8 were invited to participate, and 5 of 8 received at least a conditional recommendation for technical AI safety work. As of late 2025, no AI model was able to pass the work trial.
Ten Hard Problems in Artificial Intelligence We Must Get Right
We explore the AI2050 \"hard problems\" that block the promise of AI and cause AI risks: (1) developing general capabilities of the systems; (2) assuring the performance of AI systems and their training processes; (3) aligning system goals with human goals; (4) enabling great applications of AI in real life; (5) addressing economic disruptions; (6) ensuring the participation of all; (7) at the same time ensuring socially responsible deployment; (8) addressing any geopolitical disruptions that AI causes; (9) promoting sound governance of the technology; and (10) managing the philosophical disruptions for humans living in the age of AI. For each problem, we outline the area, identify significant recent work, and suggest ways forward. [Note: this paper reviews literature through January 2023.]