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The globally integrated sea–air anthropogenic carbon dioxide (CO2) flux from 1990 to 2009 is determined from models and data-based approaches as part of the Regional Carbon Cycle Assessment and Processes (RECCAP) project. Numerical methods include ocean inverse models, atmospheric inverse models, and ocean general circulation models with parameterized biogeochemistry (OBGCMs). The median value of different approaches shows good agreement in average uptake. The best estimate of anthropogenic CO2 uptake for the time period based on a compilation of approaches is −2.0 Pg C yr−1. The interannual variability in the sea–air flux is largely driven by large-scale climate re-organizations and is estimated at 0.2 Pg C yr−1 for the two decades with some systematic differences between approaches. The largest differences between approaches are seen in the decadal trends. The trends range from −0.13 (Pg C yr−1) decade−1 to −0.50 (Pg C yr−1) decade−1 for the two decades under investigation. The OBGCMs and the data-based sea–air CO2 flux estimates show appreciably smaller decadal trends than estimates based on changes in carbon inventory suggesting that methods capable of resolving shorter timescales are showing a slowing of the rate of ocean CO2 uptake. RECCAP model outputs for five decades show similar differences in trends between approaches.

The Southern Ocean (44-75° S) plays a critical role in the global carbon cycle, yet remains one of the most poorly sampled ocean regions. Different approaches have been used to estimate sea-air CO2 fluxes in this region: synthesis of surface ocean observations, ocean biogeochemical models, and atmospheric and ocean inversions. As part of the RECCAP (REgional Carbon Cycle Assessment and Processes) project, we combine these different approaches to quantify and assess the magnitude and variability in Southern Ocean sea-air CO2 fluxes between 1990-2009. Using all models and inversions (26), the integrated median annual sea-air CO2 flux of -0.42 ± 0.07 Pg C yr-1 for the 44-75° S region, is consistent with the -0.27 ± 0.13 Pg C yr-1 calculated using surface observations. The circumpolar region south of 58° S has a small net annual flux (model and inversion median: -0.04 ± 0.07 Pg C yr-1 and observations: +0.04 ± 0.02 Pg C yr-1 ), with most of the net annual flux located in the 44 to 58° S circumpolar band (model and inversion median: -0.36 ± 0.09 Pg C yr-1 and observations: -0.35 ± 0.09 Pg C yr-1 ). Seasonally, in the 44-58° S region, the median of 5 ocean biogeochemical models captures the observed sea-air CO2 flux seasonal cycle, while the median of 11 atmospheric inversions shows little seasonal change in the net flux. South of 58° S, neither atmospheric inversions nor ocean biogeochemical models reproduce the phase and amplitude of the observed seasonal sea-air CO2 flux, particularly in the Austral Winter. Importantly, no individual atmospheric inversion or ocean biogeochemical model is capable of reproducing both the observed annual mean uptake and the observed seasonal cycle. This raises concerns about projecting future changes in Southern Ocean CO2 fluxes. The median interannual variability from atmospheric inversions and ocean biogeochemical models is substantial in the Southern Ocean; up to 25% of the annual mean flux, with 25% of this interannual variability attributed to the region south of 58° S. Resolving long-term trends is difficult due to the large interannual variability and short time frame (1990-2009) of this study; this is particularly evident from the large spread in trends from inversions and ocean biogeochemical models. Nevertheless, in the period 1990-2009 ocean biogeochemical models do show increasing oceanic uptake consistent with the expected increase of -0.05 Pg C yr-1 decade-1 . In contrast, atmospheric inversions suggest little change in the strength of the CO2 sink broadly consistent with the results of Le Quéré et al. (2007).

The Southern Ocean has taken up more than 40% of the total anthropogenic carbon (C ant ) stored in the oceans since the preindustrial era, mainly in subantarctic mode and intermediate waters (SAMW-AAIW). However, the physical mechanisms responsible for the transfer of C ant into the ocean interior remain poorly understood. Here, we use high resolution (1/10°) ocean simulations to investigate these mechanisms at the SAMW-AAIW subduction hotspots. Mesoscale Stationary Rossby Waves (SRWs), generated where the Antarctic Circumpolar Current interacts with topography, make the dominant contribution to the C ant transfer in SAMW-AAIW in the Indian and Pacific sectors (66% and 95% respectively). Eddy-resolving simulations reproduce the observed C ant sequestration in these layers, while lower spatial resolution models, that do not reproduce SRWs, underestimate the inventory of C ant in these layers by 40% and overestimate the storage in denser layers. A key implication is that climate model simulations, that lack sufficient resolution to represent sequestration by SRWs, are therefore likely to overestimate the residence time of C ant in the ocean, with implications for simulated rates of climate change.

Analysis of the variability of the last 18 yr (1993-2012) of a 32 yr run of a new near-global, eddy-resolving ocean general circulation model coupled with biogeochemistry is presented. Comparisons between modelled and observed mean sea level (MSL), mixed layer depth (MLD), sea level anomaly (SLA), sea surface temperature (SST), and {\\chla} indicate that the model variability is realistic. We find some systematic errors in the modelled MLD, with the model generally deeper than observations, which results in errors in the {\\chla}, owing to the strong biophysical coupling. We evaluate several other metrics in the model, including the zonally averaged seasonal cycle of SST, meridional overturning, volume transports through key straits and passages, zonally averaged temperature and salinity, and El Niño-related SST indices. We find that the modelled seasonal cycle in SST is 0.5-1.5 °C weaker than observed; volume transports of the Antarctic Circumpolar Current, the East Australian Current, and Indonesian Throughflow are in good agreement with observational estimates; and the correlation between the modelled and observed NINO SST indices exceeds 0.91. Most aspects of the model circulation are realistic. We conclude that the model output is suitable for broader analysis to better understand upper ocean dynamics and ocean variability at mid- and low latitudes. The new model is intended to underpin a future version of Australia's operational short-range ocean forecasting system.

Increasing sea surface temperatures (SSTs) are predicted to adversely impact coral populations worldwide through increasing thermal bleaching events. Future bleaching is unlikely to be spatially uniform. Therefore, understanding what determines regional differences will be critical for adaptation management. Here, using a cumulative heat stress metric, we show that characteristics of regional SST determine the future bleaching risk patterns. Incorporating observed information on SST variability, in assessing future bleaching risk, provides novel options for management strategies. As a consequence, the known biases in climate model variability and the uncertainties in regional warming rate across climate models are less detrimental than previously thought. We also show that the thresholds used to indicate reef viability can strongly influence a decision on what constitutes a potential refugia. Observing and understanding the drivers of regional variability, and the viability limits of coral reefs, is therefore critical for making meaningful projections of coral bleaching risk. The bleaching threat to coral reefs from warming is increasing, but risk locations are not clear. This study relates regional sea surface temperature variability to bleaching sensitivity and the future risk to coral reefs.

Ocean acidification (OA) is the consequence of rising atmospheric CO2 levels, and it is occurring in conjunction with global warming. Observational studies show that OA will impact ocean biogeochemical cycles. Here, we use an Earth system model under the RCP8.5 emission scenario to evaluate and quantify the first-order impacts of OA on marine biogeochemical cycles, and its potential feedback on our future climate. We find that OA impacts have only a small impact on the future atmospheric CO2 (less than 45 ppm) and global warming (less than a 0.25 K) by 2100. While the climate change feedbacks are small, OA impacts may significantly alter the distribution of biological production and remineralisation, which would alter the dissolved oxygen distribution in the ocean interior. Our results demonstrate that the consequences of OA will not be through its impact on climate change, but on how it impacts the flow of energy in marine ecosystems, which may significantly impact their productivity, composition and diversity.

Air-sea CO2 fluxes over the Pacific Ocean are known to be characterized by coherent large-scale structures that reflect not only ocean subduction and upwelling patterns, but also the combined effects of wind-driven gas exchange and biology. On the largest scales, a large net CO2 influx into the extratropics is associated with a robust seasonal cycle, and a large net CO2 efflux from the tropics is associated with substantial interannual variability. In this work, we have synthesized estimates of the net air-sea CO2 flux from a variety of products, drawing upon a variety of approaches in three sub-basins of the Pacific Ocean, i.e., the North Pacific extratropics (18-66° N), the tropical Pacific (18° S-18° N), and the South Pacific extratropics (44.5-18° S). These approaches include those based on the measurements of CO2 partial pressure in surface seawater (pCO2 sw), inversions of ocean-interior CO2 data, forward ocean biogeochemistry models embedded in the ocean general circulation models (OBGCMs), a model with assimilation of pCO2 sw data, and inversions of atmospheric CO2 measurements. Long-term means, interannual variations and mean seasonal variations of the regionally integrated fluxes were compared in each of the sub-basins over the last two decades, spanning the period from 1990 through 2009. A simple average of the long-term mean fluxes obtained with surface water pCO2 diagnostics and those obtained with ocean-interior CO2 inversions are -0.47 ± 0.13 Pg C yr-1 in the North Pacific extratropics, +0.44 ± 0.14 Pg C yr-1 in the tropical Pacific, and -0.37 ± 0.08 Pg C yr-1 in the South Pacific extratropics, where positive fluxes are into the atmosphere. This suggests that approximately half of the CO2 taken up over the North and South Pacific extratropics is released back to the atmosphere from the tropical Pacific. These estimates of the regional fluxes are also supported by the estimates from OBGCMs after adding the riverine CO2 flux, i.e., -0.49 ± 0.02 Pg C yr-1 in the North Pacific extratropics, +0.41 ± 0.05 Pg C yr-1 in the tropical Pacific, and -0.39 ± 0.11 Pg C yr-1 in the South Pacific extratropics. The estimates from the atmospheric CO2 inversions show large variations amongst different inversion systems, but their median fluxes are consistent with the estimates from climatological pCO2 sw data and pCO2 sw diagnostics. In the South Pacific extratropics, where CO2 variations in the surface and ocean interior are severely undersampled, the difference in the air-sea CO2 flux estimates between the diagnostic models and ocean-interior CO2 inversions is larger (0.18 Pg C yr-1 ). The range of estimates from forward OBGCMs is also large (-0.19 to -0.72 Pg C yr-1 ). Regarding interannual variability of air-sea CO2 fluxes, positive and negative anomalies are evident in the tropical Pacific during the cold and warm events of the El Niño-Southern Oscillation in the estimates from pCO2 sw diagnostic models and from OBGCMs. They are consistent in phase with the Southern Oscillation Index, but the peak-to-peak amplitudes tend to be higher in OBGCMs (0.40 ± 0.09 Pg C yr-1 ) than in the diagnostic models (0.27 ± 0.07 Pg C yr-1 ).

The Indian Ocean (44° S-30° N) plays an important role in the global carbon cycle, yet it remains one of the most poorly sampled ocean regions. Several approaches have been used to estimate net sea-air CO2 fluxes in this region: interpolated observations, ocean biogeochemical models, atmospheric and ocean inversions. As part of the RECCAP (REgional Carbon Cycle Assessment and Processes) project, we combine these different approaches to quantify and assess the magnitude and variability in Indian Ocean sea-air CO2 fluxes between 1990 and 2009. Using all of the models and inversions, the median annual mean sea-air CO2 uptake of -0.37 ± 0.06 PgC yr-1 is consistent with the -0.24 ± 0.12 PgC yr-1 calculated from observations. The fluxes from the southern Indian Ocean (18-44° S; -0.43 ± 0.07 PgC yr-1 are similar in magnitude to the annual uptake for the entire Indian Ocean. All models capture the observed pattern of fluxes in the Indian Ocean with the following exceptions: underestimation of upwelling fluxes in the northwestern region (off Oman and Somalia), overestimation in the northeastern region (Bay of Bengal) and underestimation of the CO2 sink in the subtropical convergence zone. These differences were mainly driven by lack of atmospheric CO2 data in atmospheric inversions, and poor simulation of monsoonal currents and freshwater discharge in ocean biogeochemical models. Overall, the models and inversions do capture the phase of the observed seasonality for the entire Indian Ocean but overestimate the magnitude. The predicted sea-air CO2 fluxes by ocean biogeochemical models (OBGMs) respond to seasonal variability with strong phase lags with reference to climatological CO2 flux, whereas the atmospheric inversions predicted an order of magnitude higher seasonal flux than OBGMs. The simulated interannual variability by the OBGMs is weaker than that found by atmospheric inversions. Prediction of such weak interannual variability in CO2 fluxes by atmospheric inversions was mainly caused by a lack of atmospheric data in the Indian Ocean. The OBGM models suggest a small strengthening of the sink over the period 1990-2009 of -0.01 PgC decade-1 . This is inconsistent with the observations in the southwestern Indian Ocean that shows the growth rate of oceanic pCO2 was faster than the observed atmospheric CO2 growth, a finding attributed to the trend of the Southern Annular Mode (SAM) during the 1990s.

Coral reefs are diverse ecosystems that are threatened by rising CO2 levels through increases in sea surface temperature and ocean acidification. Here we present a new unified model that links changes in temperature and carbonate chemistry to coral health. Changes in coral health and population are explicitly modelled by linking rates of growth, recovery and calcification to rates of bleaching and temperature-stress-induced mortality. The model is underpinned by four key principles: the Arrhenius equation, thermal specialisation, correlated up- and down-regulation of traits that are consistent with resource allocation trade-offs, and adaption to local environments. These general relationships allow this model to be constructed from a range of experimental and observational data. The performance of the model is assessed against independent data to demonstrate how it can capture the observed response of corals to stress. We also provide new insights into the factors that determine calcification rates and provide a framework based on well-known biological principles to help understand the observed global distribution of calcification rates. Our results suggest that, despite the implicit complexity of the coral reef environment, a simple model based on temperature, carbonate chemistry and different species can give insights into how corals respond to changes in temperature and ocean acidification.