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"Li, Benjamin D author"
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Long-read sequencing reveals the RNA isoform repertoire of neuropsychiatric risk genes in human brain
by
Li, Anran
,
Whitehead, Eloise M.
,
Dutt, Mriga
in
Alternative Splicing
,
Animal Genetics and Genomics
,
Annotations
2025
Background
Neuropsychiatric disorders are highly complex conditions and the risk of developing a disorder has been tied to hundreds of genomic variants that alter the expression and/or RNA isoforms made by risk genes. However, how these genes contribute to disease risk and onset through altered expression and RNA splicing is not well understood.
Results
Combining our new bioinformatic pipeline IsoLamp with nanopore long-read amplicon sequencing, we deeply profile the RNA isoform repertoire of 31 high-confidence neuropsychiatric disorder risk genes in Human brain. We show most risk genes are more complex than previously reported, identifying 363 novel isoforms and 28 novel exons, including isoforms which alter protein domains, and genes such as
ATG13
and
GATAD2A
where most expression was from previously undiscovered isoforms. The greatest isoform diversity is detected in the schizophrenia risk gene
ITIH4
. Mass spectrometry of brain protein isolates confirms translation of a novel exon skipping event in ITIH4, suggesting a new regulatory mechanism for this gene in the brain.
Conclusions
Our results emphasize the widespread presence of previously undetected RNA and protein isoforms in the human brain and provide an effective approach to address this knowledge gap. Uncovering the isoform repertoire of candidate neuropsychiatric risk genes will underpin future analyses of the functional impact these isoforms have on neuropsychiatric disorders, enabling the translation of genomic findings into a pathophysiological understanding of disease.
Journal Article