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"Li, Jinjie"
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The configuration path of the balanced compulsory education resources supply in the context of equal rights to rent and purchase: Based on the fsQCA analysis of 31 cities in China
2024
Equal rights to rent and purchase affects the supply of compulsory education resources. How to promote the balanced compulsory education resources supply in the context of equal rights to rent and purchase is currently a hot issue amongst government and society. To achieve such balance, conducting research in the context of equal rights to rent and purchase becomes crucial. However, existing research has yet to provide sufficient explanations for the differentiated paths for realizing the balanced compulsory education resources supply in practice. This study uses 31 cities in China as case samples and jointly applies fuzzy-set qualitative comparative analysis and the ‘technology–organization–environment’ (TOE) framework. The findings are summarized as follows. Firstly, the balanced compulsory education resources supply in the context of equal rights to rent and purchase is affected by six key technological, organizational, and environmental factors. Namely, data co-construction and sharing, technological infrastructure, attention allocation, government information disclosure, policy support for equal rights to rent and purchase, and level of urban economic development. Secondly, the linkage matching of technological, organizational and environmental conditions forms diversified configurations that drive the balanced compulsory education resources supply in the context of equal rights to rent and purchase. These configurations include the ‘organization’ driving model, ‘technology–environment’ driving model, ‘technology–organization–environment’ driving model, and ‘technology-organization’ driving model. Finally, eastern, central and western China are driven by different configuration paths. Amongst them, eastern China has relatively good basic conditions at the technological, organizational and environmental levels. The combination of different conditions can drive the balanced compulsory education resources supply in a ‘different paths lead to the same destination’ manner. Although the development in central China is somewhat restricted, the radiation and impetus from eastern China, in combination with the different conditions in central China, can drive the balanced compulsory education resources supply. Western China shows no advantages at the technological, organizational and environmental levels. Faced with restrictions in organizational and environmental conditions, the government in western China should develop the necessary technological conditions to drive the balanced compulsory education resources supply.
Journal Article
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
2018
Here we analyse genetic variation, population structure and diversity among 3,010 diverse Asian cultivated rice (
Oryza sativa
L.) genomes from the 3,000 Rice Genomes Project. Our results are consistent with the five major groups previously recognized, but also suggest several unreported subpopulations that correlate with geographic location. We identified 29 million single nucleotide polymorphisms, 2.4 million small indels and over 90,000 structural variations that contribute to within- and between-population variation. Using pan-genome analyses, we identified more than 10,000 novel full-length protein-coding genes and a high number of presence–absence variations. The complex patterns of introgression observed in domestication genes are consistent with multiple independent rice domestication events. The public availability of data from the 3,000 Rice Genomes Project provides a resource for rice genomics research and breeding.
Analyses of genetic variation and population structure based on over 3,000 cultivated rice (
Oryza sativa
) genomes reveal subpopulations that correlate with geographic location and patterns of introgression consistent with multiple rice domestication events.
Journal Article
Variation of a major facilitator superfamily gene contributes to differential cadmium accumulation between rice subspecies
2019
Cadmium (Cd) accumulation in rice grain poses a serious threat to human health. While several transport systems have been reported, the complexity of rice Cd transport and accumulation indicates the necessity of identifying additional genes, especially those that are responsible for Cd accumulation divergence between
indica
and
japonica
rice subspecies. Here, we show that a gene,
OsCd1
, belonging to the major facilitator superfamily is involved in root Cd uptake and contributes to grain accumulation in rice. Natural variation in
OsCd1
with a missense mutation Val449Asp is responsible for the divergence of rice grain Cd accumulation between
indica
and
japonica
. Near-isogenic line tests confirm that the
indica
variety carrying the
japonica
allele
OsCd1
V449
can reduce the grain Cd accumulation. Thus, the
japonica
allele
OsCd1
V449
may be useful for reducing grain Cd accumulation of
indica
rice cultivars through breeding.
Grain of
indica
rice accumulates more toxic cadmium (Cd) than
japonica
, but the underlying genetic basis is unclear. Here, the authors show that natural variation of
OsCd1
contributes to divergence in grain Cd accumulation and transferring
japonica
allele to
indica
rice leads to reduced Cd accumulation.
Journal Article
Natural variation of DROT1 confers drought adaptation in upland rice
2022
Upland rice is a distinct ecotype that grows in aerobic environments and tolerates drought stress. However, the genetic basis of its drought resistance is unclear. Here, using an integrative approach combining a genome-wide association study with analyses of introgression lines and transcriptomic profiles, we identify a gene,
DROUGHT1
(
DROT1
), encoding a COBRA-like protein that confers drought resistance in rice.
DROT1
is specifically expressed in vascular bundles and is directly repressed by ERF3 and activated by ERF71, both drought-responsive transcription factors. DROT1 improves drought resistance by adjusting cell wall structure by increasing cellulose content and maintaining cellulose crystallinity. A C-to-T single-nucleotide variation in the promoter increases
DROT1
expression and drought resistance in upland rice. The potential elite haplotype of
DROT1
in upland rice could originate in wild rice (
O. rufipogon
) and may be beneficial for breeding upland rice varieties.
Genetic basis of the drought tolerance of upland rice is unclear. Here, the authors report the cloning of a COBRA-like protein encoding gene
DROT1
and reveal that it is repressed by ERF3 and activated by ERF71 to help control the balance between growth and drought tolerance in upland rice.
Journal Article
Overexpression of OsMYB48-1, a Novel MYB-Related Transcription Factor, Enhances Drought and Salinity Tolerance in Rice
by
Zhang, Hongliang
,
Ali, Jauhar
,
Li, Jinjie
in
Abiotic stress
,
Abscisic acid
,
Abscisic Acid - metabolism
2014
MYB-type transcription factors (TFs) play essential roles in plant growth, development and respond to environmental stresses. Role of MYB-related TFs of rice in drought stress tolerance is not well documented. Here, we report the isolation and characterization of a novel MYB-related TF, OsMYB48-1, of rice. Expression of OsMYB48-1 was strongly induced by polyethylene glycol (PEG), abscisic acid (ABA), H2O2, and dehydration, while being slightly induced by high salinity and cold treatment. The OsMYB48-1 protein was localized in the nucleus with transactivation activity at the C terminus. Overexpression of OsMYB48-1 in rice significantly improved tolerance to simulated drought and salinity stresses caused by mannitol, PEG, and NaCl, respectively, and drought stress was caused by drying the soil. In contrast to wild type plants, the overexpression lines exhibited reduced rate of water loss, lower malondialdehyde (MDA) content and higher proline content under stress conditions. Moreover, overexpression plants were hypersensitive to ABA at both germination and post-germination stages and accumulated more endogenous ABA under drought stress conditions. Further studies demonstrated that overexpression of OsMYB48-1 could regulate the expression of some ABA biosynthesis genes (OsNCED4, OsNCED5), early signaling genes (OsPP2C68, OSRK1) and late responsive genes (RAB21, OsLEA3, RAB16C and RAB16D) under drought stress conditions. Collectively, these results suggested that OsMYB48-1 functions as a novel MYB-related TF which plays a positive role in drought and salinity tolerance by regulating stress-induced ABA synthesis.
Journal Article
Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging
2018
Improving the performance of rice (Oryza sativa) under drought stress has the potential to significantly affect rice productivity. Here, we report that the ERF family transcription factor OsLG3 positively regulates drought tolerance in rice. In our previous work, we found that OsLG3 has a positive effect on rice grain length without affecting grain quality. In this study, we found that OsLG3 was more strongly expressed in upland rice than in lowland rice under drought stress conditions. By performing candidate gene association analysis, we found that natural variation in the promoter of OsLG3 is associated with tolerance to osmotic stress in germinating rice seeds. Overexpression of OsLG3 significantly improved the tolerance of rice plants to simulated drought, whereas suppression of OsLG3 resulted in greater susceptibility. Phylogenetic analysis indicated that the tolerant allele of OsLG3 may improve drought tolerance in cultivated japonica rice. Introgression lines and complementation transgenic lines containing the elite allele of OsLG3
IRAT109 showed increased drought tolerance, demonstrating that natural variation in OsLG3 contributes to drought tolerance in rice. Further investigation suggested that OsLG3 plays a positive role in drought stress tolerance in rice by inducing reactive oxygen species scavenging. Collectively, our findings reveal that natural variation in OsLG3 contributes to rice drought tolerance and that the elite allele of OsLG3 is a promising genetic resource for the development of drought-tolerant rice varieties.
Journal Article
Natural variation in CTB4a enhances rice adaptation to cold habitats
2017
Low temperature is a major factor limiting rice productivity and geographical distribution. Improved cold tolerance and expanded cultivation to high-altitude or high-latitude regions would help meet growing rice demand. Here we explored a QTL for cold tolerance and cloned the gene,
CTB4a
(cold tolerance at booting stage), encoding a conserved leucine-rich repeat receptor-like kinase. We show that different
CTB4a
alleles confer distinct levels of cold tolerance and selection for variation in the
CTB4a
promoter region has occurred on the basis of environmental temperature. The newly generated cold-tolerant haplotype
Tej
-Hap-KMXBG was retained by artificial selection during temperate
japonica
evolution in cold habitats for low-temperature acclimation. Moreover, CTB4a interacts with AtpB, a beta subunit of ATP synthase. Upregulation of
CTB4a
correlates with increased ATP synthase activity, ATP content, enhanced seed setting and improved yield under cold stress conditions. These findings suggest strategies to improve cold tolerance in crop plants.
Low temperature is a major factor limiting productivity in rice. Here the authors show that the
CTB4a
gene confers cold tolerance to
japonica
varieties adapted to cold habitats at the booting stage of development, and propose that CTB4a acts via an interaction with the beta subunit of ATP synthase.
Journal Article
Cyclodextrin Inclusion Complexes and Their Application in Food Safety Analysis: Recent Developments and Future Prospects
2022
Food safety issues are a major threat to public health and have attracted much attention. Therefore, exploring accurate, efficient, sensitive, and economical detection methods is necessary to ensure consumers’ health. In this regard, cyclodextrins (CDs) are promising candidates because they are nontoxic and noncaloric. The main body of CDs is a ring structure with hydrophobic cavity and hydrophilic exterior wall. Due to the above characteristics, CDs can encapsulate small guest molecules into their cavities, enhance their stability, avoid agglomeration and oxidation, and, at the same time, interact through hydrogen bonding and electrostatic interactions. Additionally, they can selectively capture the target molecules to be detected and improve the sensitivity of food detection. This review highlights recent advances in CD inclusion technology in food safety analysis, covering various applications from small molecule and heavy metal sensing to amino acid and microbial sensing. Finally, challenges and prospects for CDs and their derivatives are presented. The current review can provide a reference and guidance for current research on CDs in the food industry and may inspire breakthroughs in this field.
Journal Article
CRISPR off-target analysis in genetically engineered rats and mice
2018
Despite widespread use of CRISPR, comprehensive data on the frequency and impact of Cas9-mediated off-targets in modified rodents are limited. Here we present deep-sequencing data from 81 genome-editing projects on mouse and rat genomes at 1,423 predicted off-target sites, 32 of which were confirmed, and show that high-fidelity Cas9 versions reduced off-target mutation rates in vivo. Using whole-genome sequencing data from ten mouse embryos, treated with a single guide RNA (sgRNA), and from their genetic parents, we found 43 off-targets, 30 of which were predicted by an adapted version of GUIDE-seq.
Journal Article
Natural variation of CTB5 confers cold adaptation in plateau japonica rice
2025
During cold acclimation in high-latitude and high-altitude regions,
japonica
rice develops enhanced cold tolerance, but the underlying genetic basis remains unclear. Here, we identify CTB5, a homeodomain-leucine zipper (HD-Zip) transcription factor that confers cold tolerance at the booting stage in
japonica
rice. Four natural variations in the promoter and coding regions enhance cold response and transcriptional regulatory activity, enabling the favorable
CTB5
KM
allele to improve cold tolerance. CTB5 interacts with OsHox12 and targets gibberellin (GA) metabolism genes to promote GAs accumulation in anthers and facilitate tapetum development under cold stress. Moreover, CTB5 directly regulates
PYL9
and improves cold tolerance at the seedling stage by reducing reactive oxygen species (ROS) accumulation. The
CTB5
KM
allele is selected during the cold acclimation of
japonica
rice to plateau habitats in Yunnan Province. Our findings provide insights into the mechanisms underlying cold adaptation in plateau
japonica
rice and offer potential targets for breeding cold-tolerant rice varieties.
Mechanisms confer to the enhanced cold tolerance in
japonica
rice have not been fully elucidated. Here, the authors report a homeodomain-leucine zipper (HD-Zip) I transcription factor encode gene
CTB5
is responsible for
japonica
rice cold tolerance by interacting with genes in gibberellin and abscisic acid pathways.
Journal Article