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"Li, Jonathan"
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Monitoring and modeling of global changes : a geomatics perspective
The chapters in this book present state-of-the-art geomatics technologies applied in global environmental studies. This text provides the latest research findings and delivers complete references to related publications. This book will motivate the undergraduate and graduate students, researchers and practitioners to better understand the environmental changes with informed solutions. Global change studies are increasingly considered a vital source of information to understand the Earth Environment, especially in the framework of human-induced, climate change and land use transformation. 'Satellite Earth Observing systems' and geomatics technologies provide a unique tool to monitor and model the changes, respectively. While the range of applications and innovative techniques are always increasing, this book provides a summary of key study cases where satellite data offers critical information to understand the usefulness of the geomatics technologies and global environmental issues. Geomatics technologies provide powerful tools to model and analyze the effects of those global environmental changes towards minimizing their adverse impacts on human health and the environment.
Polymer-stabilized Cas9 nanoparticles and modified repair templates increase genome editing efficiency
2020
Versatile and precise genome modifications are needed to create a wider range of adoptive cellular therapies1–5. Here we report two improvements that increase the efficiency of CRISPR–Cas9-based genome editing in clinically relevant primary cell types. Truncated Cas9 target sequences (tCTSs) added at the ends of the homology-directed repair (HDR) template interact with Cas9 ribonucleoproteins (RNPs) to shuttle the template to the nucleus, enhancing HDR efficiency approximately two- to fourfold. Furthermore, stabilizing Cas9 RNPs into nanoparticles with polyglutamic acid further improves editing efficiency by approximately twofold, reduces toxicity, and enables lyophilized storage without loss of activity. Combining the two improvements increases gene targeting efficiency even at reduced HDR template doses, yielding approximately two to six times as many viable edited cells across multiple genomic loci in diverse cell types, such as bulk (CD3+) T cells, CD8+ T cells, CD4+ T cells, regulatory T cells (Tregs), γδ T cells, B cells, natural killer cells, and primary and induced pluripotent stem cell-derived6 hematopoietic stem progenitor cells (HSPCs).Precise genome editing is made more efficient by stabilizing Cas9 and enhancing shuttling to the nucleus.
Journal Article
Reference rate for post-tonsillectomy haemorrhage in Australia—A 2000–2020 national hospital morbidity database analysis
2022
This study aims to provide a national benchmark rate of post-tonsillectomy haemorrhage (PTH) in Australia. Using data from Australia’s National Hospital Morbidity Database (NHMD) from 1 July 2000 to 30 June 2020, we have conducted a nation-wide population-based study to estimate a reference rate of PTH. Outcomes of interest included the overall rate and time-trend of PTH, the relationship between PTH rates with age and gender as well as the epidemiology of tonsillectomy procedures. A total of 941,557 tonsillectomy procedures and 15,391 PTH episodes were recorded for the study period. Whilst the incidence of tonsillectomy procedures and the number of day-stay tonsillectomy procedures have increased substantially over time, the overall rate of PTH for all ages has remained relatively constant (1.6% [95% CI: 1.61 to 1.66]) with no significant association observed between the annual rates of PTH and time (year) (Spearman correlation coefficient,
R
s
= 0.24 (95% CI: -0.22 to 0.61),
P
= 0.3). However, the rate of PTH in adults (aged 15 years and over) experienced a statistically significant mild to moderate upward association with time (year)
R
s
= 0.64 (95% CI: 0.28 to 0.84),
P
= 0.003. Analysis of the odds of PTH using the risk factors of increasing age and male gender showed a unique age and gender risk pattern for PTH where males aged 20 to 24 years had the highest risk of PTH odds ratio 7.3 (95% CI: 6.7 to 7.8) compared to patients aged 1 to 4 years. Clinicians should be mindful of the greater risk of PTH in male adolescents and young adults. The NHMD datasets can be continually used to evaluate the benchmark PTH rate in Australia and to facilitate tonsillectomy surgical audit activities and quality improvement programs on a national basis.
Journal Article
External powers and the Gulf monarchies
The Gulf monarchies have been generally perceived as status quo actors reliant on the USA for their security, but in response to regional events, particularly the Arab Spring of 2011, they are pursuing more activist foreign policies, which has allowed other international powers to play a larger role in regional affairs. This book analyses the changing dynamic in this region, with expert contributors providing original empirical case studies that examine the relations between the Gulf monarchies and extra-regional powers, including the USA, Russia, China, India, Brazil, Turkey, Japan, South Korea, France, and the United Kingdom. At the theoretical level, these case studies explore the extent to which different international relations and international political economy theories explain change in these relationships as the regional, political and security environment shifts. Focusing on how and why external powers approach their relationships with the Gulf monarchies, contributors ask what motivates external powers to pursue deeper involvement in an unstable region that has seen three major conflicts in the past 40 years. -- Publisher description.
Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing
by
Kim, Nam-Gyun
,
Ioannidi, Eleonora I
,
Huang, Meei-Li W
in
Betacoronavirus - genetics
,
Betacoronavirus - isolation & purification
,
Clinical Laboratory Techniques - methods
2020
A new method for the detection of SARS-CoV-2 combines simplified extraction of RNA with isothermal amplification and CRISPR (clustered regularly interspaced short palindromic repeats)–mediated detection. Testing of 402 samples indicated a sensitivity of 93.1% and a specificity of 98.5%.
Journal Article
Image-Based Obstacle Detection Methods for the Safe Navigation of Unmanned Vehicles: A Review
2022
Mobile robots lack a driver or a pilot and, thus, should be able to detect obstacles autonomously. This paper reviews various image-based obstacle detection techniques employed by unmanned vehicles such as Unmanned Surface Vehicles (USVs), Unmanned Aerial Vehicles (UAVs), and Micro Aerial Vehicles (MAVs). More than 110 papers from 23 high-impact computer science journals, which were published over the past 20 years, were reviewed. The techniques were divided into monocular and stereo. The former uses a single camera, while the latter makes use of images taken by two synchronised cameras. Monocular obstacle detection methods are discussed in appearance-based, motion-based, depth-based, and expansion-based categories. Monocular obstacle detection approaches have simple, fast, and straightforward computations. Thus, they are more suited for robots like MAVs and compact UAVs, which usually are small and have limited processing power. On the other hand, stereo-based methods use pair(s) of synchronised cameras to generate a real-time 3D map from the surrounding objects to locate the obstacles. Stereo-based approaches have been classified into Inverse Perspective Mapping (IPM)-based and disparity histogram-based methods. Whether aerial or terrestrial, disparity histogram-based methods suffer from common problems: computational complexity, sensitivity to illumination changes, and the need for accurate camera calibration, especially when implemented on small robots. In addition, until recently, both monocular and stereo methods relied on conventional image processing techniques and, thus, did not meet the requirements of real-time applications. Therefore, deep learning networks have been the centre of focus in recent years to develop fast and reliable obstacle detection solutions. However, we observed that despite significant progress, deep learning techniques also face difficulties in complex and unknown environments where objects of varying types and shapes are present. The review suggests that detecting narrow and small, moving obstacles and fast obstacle detection are the most challenging problem to focus on in future studies.
Journal Article
Review: Deep Learning on 3D Point Clouds
by
Bello, Saifullahi Aminu
,
Yu, Shangshu
,
Adam, Jibril Muhmmad
in
classification
,
computer simulation
,
computer vision
2020
A point cloud is a set of points defined in a 3D metric space. Point clouds have become one of the most significant data formats for 3D representation and are gaining increased popularity as a result of the increased availability of acquisition devices, as well as seeing increased application in areas such as robotics, autonomous driving, and augmented and virtual reality. Deep learning is now the most powerful tool for data processing in computer vision and is becoming the most preferred technique for tasks such as classification, segmentation, and detection. While deep learning techniques are mainly applied to data with a structured grid, the point cloud, on the other hand, is unstructured. The unstructuredness of point clouds makes the use of deep learning for its direct processing very challenging. This paper contains a review of the recent state-of-the-art deep learning techniques, mainly focusing on raw point cloud data. The initial work on deep learning directly with raw point cloud data did not model local regions; therefore, subsequent approaches model local regions through sampling and grouping. More recently, several approaches have been proposed that not only model the local regions but also explore the correlation between points in the local regions. From the survey, we conclude that approaches that model local regions and take into account the correlation between points in the local regions perform better. Contrary to existing reviews, this paper provides a general structure for learning with raw point clouds, and various methods were compared based on the general structure. This work also introduces the popular 3D point cloud benchmark datasets and discusses the application of deep learning in popular 3D vision tasks, including classification, segmentation, and detection.
Journal Article
Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host
by
Baden, Lindsey R
,
Brigl, Manfred
,
Qiu, Xueting
in
Antiphospholipid Syndrome - complications
,
Coronaviruses
,
Correspondence
2020
This letter describes an immunocompromised patient who had persistent infection with SARS-CoV-2 over a period of months, despite several courses of remdesivir. Phylogenetic analysis showed accelerated viral evolution.
Journal Article
Mobile Laser Scanned Point-Clouds for Road Object Detection and Extraction: A Review
by
Wang, Cheng
,
Li, Ying
,
Wang, Ruisheng
in
deep learning
,
driving line
,
mobile laser scanning (MLS)
2018
The mobile laser scanning (MLS) technique has attracted considerable attention for providing high-density, high-accuracy, unstructured, three-dimensional (3D) geo-referenced point-cloud coverage of the road environment. Recently, there has been an increasing number of applications of MLS in the detection and extraction of urban objects. This paper presents a systematic review of existing MLS related literature. This paper consists of three parts. Part 1 presents a brief overview of the state-of-the-art commercial MLS systems. Part 2 provides a detailed analysis of on-road and off-road information inventory methods, including the detection and extraction of on-road objects (e.g., road surface, road markings, driving lines, and road crack) and off-road objects (e.g., pole-like objects and power lines). Part 3 presents a refined integrated analysis of challenges and future trends. Our review shows that MLS technology is well proven in urban object detection and extraction, since the improvement of hardware and software accelerate the efficiency and accuracy of data collection and processing. When compared to other review papers focusing on MLS applications, we review the state-of-the-art road object detection and extraction methods using MLS data and discuss their performance and applicability. The main contribution of this review demonstrates that the MLS systems are suitable for supporting road asset inventory, ITS-related applications, high-definition maps, and other highly accurate localization services.
Journal Article