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"Li, Xiuhua"
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Banana Fusarium Wilt Disease Detection by Supervised and Unsupervised Methods from UAV-Based Multispectral Imagery
by
Ba, Yuxuan
,
Zhang, Muqing
,
Li, Xiuhua
in
Algorithms
,
Artificial neural networks
,
Back propagation networks
2022
Banana Fusarium wilt (BFW) is a devastating disease with no effective cure methods. Timely and effective detection of the disease and evaluation of its spreading trend will help farmers in making right decisions on plantation management. The main purpose of this study was to find the spectral features of the BFW-infected canopy and build the optimal BFW classification models for different stages of infection. A RedEdge-MX camera mounted on an unmanned aerial vehicle (UAV) was used to collect multispectral images of a banana plantation infected with BFW in July and August 2020. Three types of spectral features were used as the inputs of classification models, including three-visible-band images, five-multispectral-band images, and vegetation indices (VIs). Four supervised methods including Support Vector Machine (SVM), Random Forest (RF), Back Propagation Neural Networks (BPNN) and Logistic Regression (LR), and two unsupervised methods including Hotspot Analysis (HA) and Iterative Self-Organizing Data Analysis Technique Algorithm (ISODATA) were adopted to detect the BFW-infected canopies. Comparing to the healthy canopies, the BFW-infected canopies had higher reflectance in the visible region, but lower reflectance in the NIR region. The classification results showed that most of the supervised and unsupervised methods reached excellent accuracies. Among all the supervised methods, RF based on the five-multispectral-band was considered as the optimal model, with higher overall accuracy (OA) of 97.28% and faster running time of 22 min. For the unsupervised methods, HA reached high and balanced OAs of more than 95% based on the selected VIs derived from the red and NIR band, especially for WDRVI, NDVI, and TDVI. By comprehensively evaluating the classification results of different metrics, the unsupervised method HA was recommended for BFW recognition, especially in the late stage of infection; the supervised method RF was recommended in the early stage of infection to reach a slightly higher accuracy. The results found in this study could give advice for banana plantation management and provide approaches for plant disease detection.
Journal Article
Coarse-to-Fine Localization for Detecting Misalignment State of Angle Cocks
2023
The state of angle cocks determines the air connectivity of freight trains, and detecting their state is helpful to improve the safety of the running trains. Although the current research for fault detection of angle cocks has achieved high accuracy, it only focuses on the detection of the closed state and non-closed state and treats them as normal and abnormal states, respectively. Since the non-closed state includes the fully open state and the misalignment state, while the latter may lead to brake abnormally, it is very necessary to further detect the misalignment state from the non-closed state. In this paper, we propose a coarse-to-fine localization method to achieve this goal. Firstly, the localization result of an angle cock is obtained by using the YOLOv4 model. Following that, the SVM model combined with the HOG feature of the localization result of an angle cock is used to further obtain its handle localization result. After that, the HOG feature of the sub-image only containing the handle localization result continues to be used in the SVM model to detect whether the angle cock is in the non-closed state or not. When the angle cock is in the non-closed state, its handle curve is fitted by binarization and window search, and the tilt angle of the handle is calculated by the minimum bounding rectangle. Finally, the misalignment state is detected when the tilt angle of the handle is less than the threshold. The effectiveness and robustness of the proposed method are verified by extensive experiments, and the accuracy of misalignment state detection for angle cocks reaches 96.49%.
Journal Article
Sugarcane Nitrogen Concentration and Irrigation Level Prediction Based on UAV Multispectral Imagery
by
Ba, Yuxuan
,
Zhang, Muqing
,
Nong, Mengling
in
Agricultural production
,
canopy nitrogen concentration
,
Edible Grain
2022
Sugarcane is the main industrial crop for sugar production, and its growth status is closely related to fertilizer, water, and light input. Unmanned aerial vehicle (UAV)-based multispectral imagery is widely used for high-throughput phenotyping, since it can rapidly predict crop vigor at field scale. This study focused on the potential of drone multispectral images in predicting canopy nitrogen concentration (CNC) and irrigation levels for sugarcane. An experiment was carried out in a sugarcane field with three irrigation levels and five fertilizer levels. Multispectral images at an altitude of 40 m were acquired during the elongating stage. Partial least square (PLS), backpropagation neural network (BPNN), and extreme learning machine (ELM) were adopted to establish CNC prediction models based on various combinations of band reflectance and vegetation indices. The simple ratio pigment index (SRPI), normalized pigment chlorophyll index (NPCI), and normalized green-blue difference index (NGBDI) were selected as model inputs due to their higher grey relational degree with the CNC and lower correlation between one another. The PLS model based on the five-band reflectance and the three vegetation indices achieved the best accuracy (Rv = 0.79, RMSEv = 0.11). Support vector machine (SVM) and BPNN were then used to classify the irrigation levels based on five spectral features which had high correlations with irrigation levels. SVM reached a higher accuracy of 80.6%. The results of this study demonstrated that high resolution multispectral images could provide effective information for CNC prediction and water irrigation level recognition for sugarcane crop.
Journal Article
WeedNet-R: a sugar beet field weed detection algorithm based on enhanced RetinaNet and context semantic fusion
2023
Accurate and dependable weed detection technology is a prerequisite for weed control robots to do autonomous weeding. Due to the complexity of the farmland environment and the resemblance between crops and weeds, detecting weeds in the field under natural settings is a difficult task. Existing deep learning-based weed detection approaches often suffer from issues such as monotonous detection scene, lack of picture samples and location information for detected items, low detection accuracy, etc. as compared to conventional weed detection methods. To address these issues, WeedNet-R, a vision-based network for weed identification and localization in sugar beet fields, is proposed. WeedNet-R adds numerous context modules to RetinaNet’s neck in order to combine context information from many feature maps and so expand the effective receptive fields of the entire network. During model training, meantime, a learning rate adjustment method combining an untuned exponential warmup schedule and cosine annealing technique is implemented. As a result, the suggested method for weed detection is more accurate without requiring a considerable increase in model parameters. The WeedNet-R was trained and assessed using the OD-SugarBeets dataset, which is enhanced by manually adding the bounding box labels based on the publicly available agricultural dataset, i.e. SugarBeet2016. Compared to the original RetinaNet, the mAP of the proposed WeedNet-R increased in the weed detection job in sugar beet fields by 4.65% to 92.30%. WeedNet-R’s average precision for weed and sugar beet is 85.70% and 98.89%, respectively. WeedNet-R outperforms other sophisticated object detection algorithms in terms of detection accuracy while matching other single-stage detectors in terms of detection speed.
Journal Article
Fast Recognition and Counting Method of Dragon Fruit Flowers and Fruits Based on Video Stream
2023
Dragon fruit (Hylocereus undatus) is a tropical and subtropical fruit that undergoes multiple ripening cycles throughout the year. Accurate monitoring of the flower and fruit quantities at various stages is crucial for growers to estimate yields, plan orders, and implement effective management strategies. However, traditional manual counting methods are labor-intensive and inefficient. Deep learning techniques have proven effective for object recognition tasks but limited research has been conducted on dragon fruit due to its unique stem morphology and the coexistence of flowers and fruits. Additionally, the challenge lies in developing a lightweight recognition and tracking model that can be seamlessly integrated into mobile platforms, enabling on-site quantity counting. In this study, a video stream inspection method was proposed to classify and count dragon fruit flowers, immature fruits (green fruits), and mature fruits (red fruits) in a dragon fruit plantation. The approach involves three key steps: (1) utilizing the YOLOv5 network for the identification of different dragon fruit categories, (2) employing the improved ByteTrack object tracking algorithm to assign unique IDs to each target and track their movement, and (3) defining a region of interest area for precise classification and counting of dragon fruit across categories. Experimental results demonstrate recognition accuracies of 94.1%, 94.8%, and 96.1% for dragon fruit flowers, green fruits, and red fruits, respectively, with an overall average recognition accuracy of 95.0%. Furthermore, the counting accuracy for each category is measured at 97.68%, 93.97%, and 91.89%, respectively. The proposed method achieves a counting speed of 56 frames per second on a 1080ti GPU. The findings establish the efficacy and practicality of this method for accurate counting of dragon fruit or other fruit varieties.
Journal Article
Identification and Counting of Sugarcane Seedlings in the Field Using Improved Faster R-CNN
2022
Sugarcane seedling emergence is important for sugar production. Manual counting is time-consuming and hardly practicable for large-scale field planting. Unmanned aerial vehicles (UAVs) with fast acquisition speed and wide coverage are becoming increasingly popular in precision agriculture. We provide a method based on improved Faster RCNN for automatically detecting and counting sugarcane seedlings using aerial photography. The Sugarcane-Detector (SGN-D) uses ResNet 50 for feature extraction to produce high-resolution feature expressions and provides an attention method (SN-block) to focus the network on learning seedling feature channels. FPN aggregates multi-level features to tackle multi-scale problems, while optimizing anchor boxes for sugarcane size and quantity. To evaluate the efficacy and viability of the proposed technology, 238 images of sugarcane seedlings were taken from the air with an unmanned aerial vehicle. Outcoming with an average accuracy of 93.67%, our proposed method outperforms other commonly used detection models, including the original Faster R-CNN, SSD, and YOLO. In order to eliminate the error caused by repeated counting, we further propose a seedlings de-duplication algorithm. The highest counting accuracy reached 96.83%, whilst the mean absolute error (MAE) reached 4.6 when intersection of union (IoU) was 0.15. In addition, a software system was developed for the automatic identification and counting of cane seedlings. This work can provide accurate seedling data, thus can support farmers making proper cultivation management decision.
Journal Article
Banana plant counting and morphological parameters measurement based on terrestrial laser scanning
by
Wang, Liuyang
,
Li, Xiuhua
,
Miao, Yanlong
in
Accelerating image-based plant phenotyping and pattern recognition: deep learning or few-shot learning?
,
Accuracy
,
Algorithms
2022
Background
The number of banana plants is closely related to banana yield. The diameter and height of the pseudo-stem are important morphological parameters of banana plants, which can reflect the growth status and vitality. To address the problems of high labor intensity and subjectivity in traditional measurement methods, a fast measurement method for banana plant count, pseudo-stem diameter, and height based on terrestrial laser scanning (TLS) was proposed.
Results
First, during the nutritional growth period of banana, three-dimensional (3D) point cloud data of two measured fields were obtained by TLS. Second, the point cloud data was preprocessed. And the single plant segmentation of the canopy closed banana plant point cloud was realized furtherly. Finally, the number of banana plants was obtained by counting the number of pseudo-stems, and the diameter of pseudo-stems was measured using a cylindrical segmentation algorithm. A sliding window recognition method was proposed to determine the junction position between leaves and pseudo-stems, and the height of the pseudo-stems was measured. Compared with the measured value of artificial point cloud, when counting the number of banana plants, the precision,recall and percentage error of field 1 were 93.51%, 94.02%, and 0.54% respectively; the precision,recall and percentage error of field 2 were 96.34%, 92.00%, and 4.5% respectively; In the measurement of pseudo-stem diameter and height of banana, the root mean square error (RMSE) of pseudo-stem diameter and height of banana plant in field 1 were 0.38 cm and 0.2014 m respectively, and the mean absolute percentage error (MAPE) were 1.30% and 5.11% respectively; the RMSE of pseudo-stem diameter and height of banana plant in field 2 were 0.39 cm and 0.2788 m respectively, and the MAPE were 1.04% and 9.40% respectively.
Conclusion
The results show that the method proposed in this paper is suitable for the field measurement of banana count, pseudo-stem diameter, and height and can provide a fast field measurement method for banana plantation management.
Journal Article
Toxicity of per- and polyfluoroalkyl substances to aquatic vertebrates
2023
Rapid industrial development and extensive use of chemicals have resulted in elevated concentrations of emerging contaminants worldwide, posing a substantial threat to the ecological environment and human health. Per- and polyfluoroalkyl substances (PFASs) have been recognized as emerging pollutants that are widely distributed and accumulated in the environment and they have drawn the attention of scholars for several decades. The variety, long-term use, and long-distance transmission of PFASs have resulted in the ubiquitous contamination of global ecosystems, especially in aquatic environments. Ever since perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) were added to the Stockholm Convention on Persistent Organic Pollutants (POPs), they have become the most typical, eye-catching, and frequently investigated PFASs. Owing to the high stability and bioaccumulation of PFASs, as well as the adverse impact on the endocrine, immune, and nervous systems, investigating their contamination levels, risk of transfer along the food chain, and ecotoxicity should be prioritized. In addition to the important evolutionary significance as primitive vertebrates and the main consumers of aquatic environment, fishes generally exist in various aquatic food chains from the bottom to the top and occupy a critical position in terms of aquatic ecology protection; while amphibians, as the key link from aquatic to terrestrial organisms, are highly sensitive to different environmental pollutants. This review is a comprehensive summary of the toxic effects and toxicity-related factors of PFASs on aquatic vertebrates, mainly Pisces and Amphilla organisms, the characteristics of different aquatic vertebrates in toxicity investigations, and the evaluation of the feasibility of PFASs substitute applications.
Journal Article
Construction and Implementation of “Online + Offline” Mental Health Service System - Taking E College as an Example
2023
In response to the mental health service needs of students under the background of normalized epidemic prevention and control, an “online + offline” mental health service system is built and implemented with the support of the online platforms. This system improves the level of mental health services on campus by building service platforms, broadening service horizons and integrating educational resources.
Journal Article
Stathmin 1 is a biomarker for diagnosis of microvascular invasion to predict prognosis of early hepatocellular carcinoma
2022
Microvascular invasion (MVI) is presently evaluated as a high-risk factor to be directly relative to postoperative prognosis of hepatocellular carcinoma (HCC). Up to now, diagnosis of MVI mainly depends on the postoperative pathological analyses with H&E staining assay, based on numbers and distribution characteristics of MVI to classify the risk levels of MVI. However, such pathological analyses lack the specificity to discriminate MVI in HCC specimens, especially in complicated pathological tissues. In addition, the efficiency to precisely define stages of MVI is not satisfied. Thus, any biomarker for both conforming diagnosis of MVI and staging its levels will efficiently and effectively promote the prediction of early postoperative recurrence and metastasis for HCC. Through bioinformatics analysis and clinical sample verification, we discovered that Stathmin 1 (STMN1) gene was significantly up-regulated at the locations of MVI. Combining STMN1 immunostaining with classic H&E staining assays, we established a new protocol for MVI pathological diagnosis. Next, we found that the degrees of MVI risk could be graded according to expression levels of STMN1 for prognosis prediction on recurrence rates and overall survival in early HCC patients. STMN1 affected epithelial-mesenchymal transformation (EMT) of HCC cells by regulating the dynamic balance of microtubules through signaling of “STMN1-Microtubule-EMT” axis. Inhibition of STMN1 expression in HCC cells reduced their lung metastatic ability in recipients of mouse model, suggesting that STMN1 also could be a potential therapeutic target for inhibiting HCC metastasis. Therefore, we conclude that STMN1 has potentials for clinical applications as a biomarker for both pathological diagnosis and prognostic prediction, as well as a therapeutic target for HCC.
Journal Article