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4,312
result(s) for
"Liang, Wan"
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Rice Blast Disease Recognition Using a Deep Convolutional Neural Network
by
Zhang, Hong
,
Liang, Wan-jie
,
Cao, Hong-xin
in
639/705/117
,
639/705/258
,
Humanities and Social Sciences
2019
Rice disease recognition is crucial in automated rice disease diagnosis systems. At present, deep convolutional neural network (CNN) is generally considered the state-of-the-art solution in image recognition. In this paper, we propose a novel rice blast recognition method based on CNN. A dataset of 2906 positive samples and 2902 negative samples is established for training and testing the CNN model. In addition, we conduct comparative experiments for qualitative and quantitatively analysis in our evaluation of the effectiveness of the proposed method. The evaluation results show that the high-level features extracted by CNN are more discriminative and effective than traditional hand-crafted features including local binary patterns histograms (LBPH) and Haar-WT (Wavelet Transform). Moreover, quantitative evaluation results indicate that CNN with Softmax and CNN with support vector machine (SVM) have similar performances, with higher accuracy, larger area under curve (AUC), and better receiver operating characteristic (ROC) curves than both LBPH plus an SVM as the classifier and Haar-WT plus an SVM as the classifier. Therefore, our CNN model is a top performing method for rice blast disease recognition and can be potentially employed in practical applications.
Journal Article
Few-Shot network intrusion detection based on prototypical capsule network with attention mechanism
2023
Network intrusion detection plays a crucial role in ensuring network security by distinguishing malicious attacks from normal network traffic. However, imbalanced data affects the performance of intrusion detection system. This paper utilizes few-shot learning to solve the data imbalance problem caused by insufficient samples in network intrusion detection, and proposes a few-shot intrusion detection method based on prototypical capsule network with the attention mechanism. Our method is mainly divided into two parts, a temporal-spatial feature fusion method using capsules for feature extraction and a prototypical network classification method with attention and vote mechanisms. The experimental results demonstrate that our proposed model outperforms state-of-the-art methods on imbalanced datasets.
Journal Article
Does emission trading scheme have spillover effect on industrial structure upgrading? Evidence from the EU based on a PSM-DID approach
by
Wang, Shanyong
,
Li, Zejun
,
Wang, Chengyuan
in
Aquatic Pollution
,
Atmospheric Protection/Air Quality Control/Air Pollution
,
Carbon
2020
The coordinated development of environmental pollution and the economy has become a global problem. Emission trading scheme (ETS) has become a significant environmental policy instrument, prior studies primarily concentrated on micro-level factors with specific industries; there lacks discussion on the effects of ETS on macro-level industrial structure such as industrial structure upgrading. In this paper, we first use the propensity score matching (PSM) to screen out the control group in which countries are matched with the members of the EU, and then utilize the difference-in-differences (DID) method, to examine the effects of ETS implementation on national industrial structure upgrading in the members of the EU. Empirical results show that the EU ETS may does not have a significant impact on industrial structure change, while the implementation of EU ETS has significantly promoted the upgrading of the country’s industrial structure, and the policy effect of EU ETS on industrial structure upgrading gradually increases as time goes by and there is a dynamic effect. The conclusions of this paper can be used as reference for the development of emission reduction policies in large countries with unbalanced internal development.
Journal Article
Optimizing risk-based breast cancer screening policies with reinforcement learning
by
Lin, Gigin
,
Kim, Thomas
,
Yala, Adam
in
692/699/67/2322
,
692/700/1538
,
Artificial Intelligence
2022
Screening programs must balance the benefit of early detection with the cost of overscreening. Here, we introduce a novel reinforcement learning-based framework for personalized screening, Tempo, and demonstrate its efficacy in the context of breast cancer. We trained our risk-based screening policies on a large screening mammography dataset from Massachusetts General Hospital (MGH; USA) and validated this dataset in held-out patients from MGH and external datasets from Emory University (Emory; USA), Karolinska Institute (Karolinska; Sweden) and Chang Gung Memorial Hospital (CGMH; Taiwan). Across all test sets, we find that the Tempo policy combined with an image-based artificial intelligence (AI) risk model is significantly more efficient than current regimens used in clinical practice in terms of simulated early detection per screen frequency. Moreover, we show that the same Tempo policy can be easily adapted to a wide range of possible screening preferences, allowing clinicians to select their desired trade-off between early detection and screening costs without training new policies. Finally, we demonstrate that Tempo policies based on AI-based risk models outperform Tempo policies based on less accurate clinical risk models. Altogether, our results show that pairing AI-based risk models with agile AI-designed screening policies has the potential to improve screening programs by advancing early detection while reducing overscreening.
A reinforcement learning model can predict risk-based follow-up recommendations to improve early detection and reduce screening costs in breast cancer across diverse patient populations.
Journal Article
LincRNA ZNF529-AS1 inhibits hepatocellular carcinoma via FBXO31 and predicts the prognosis of hepatocellular carcinoma patients
by
Ma, Yang
,
Zhao, Guanru
,
Ma, Shuo Shuo
in
Algorithms
,
Bioinformatics
,
Biomedical and Life Sciences
2023
Background
Invasion and metastasis of hepatocellular carcinoma (HCC) is still an important reason for poor prognosis. LincRNA ZNF529-AS1 is a recently identified tumour-associated molecule that is differentially expressed in a variety of tumours, but its role in HCC is still unclear. This study investigated the expression and function of ZNF529-AS1 in HCC and explored the prognostic significance of ZNF529-AS1 in HCC.
Methods
Based on HCC information in TCGA and other databases, the relationship between the expression of ZNF529-AS1 and clinicopathological characteristics of HCC was analysed by the Wilcoxon signed-rank test and logistic regression. The relationship between ZNF529-AS1 and HCC prognosis was evaluated by Kaplan‒Meier and Cox regression analyses. The cellular function and signalling pathways involved in ZNF529-AS1 were analysed by GO and KEGG enrichment analysis. The relationship between ZNF529-AS1 and immunological signatures in the HCC tumour microenvironment was analysed by the ssGSEA algorithm and CIBERSORT algorithm. HCC cell invasion and migration were investigated by the Transwell assay. Gene and protein expression were detected by PCR and western blot analysis, respectively.
Results
ZNF529-AS1 was differentially expressed in various types of tumours and was highly expressed in HCC. The expression of ZNF529-AS1 was closely correlated with the age, sex, T stage, M stage and pathological grade of HCC patients. Univariate and multivariate analyses showed that ZNF529-AS1 was significantly associated with poor prognosis of HCC patients and could be an independent prognostic indicator of HCC. Immunological analysis showed that the expression of ZNF529-AS1 was correlated with the abundance and immune function of various immune cells. Knockdown of ZNF529-AS1 in HCC cells inhibited cell invasion and migration and inhibited the expression of FBXO31.
Conclusion
ZNF529-AS1 could be a new prognostic marker for HCC. FBXO31 may be the downstream target of ZNF529-AS1 in HCC.
Journal Article
Radiomics and deep learning model based on X-ray imaging for the assisted diagnosis of early Legg-Calvé-Perthes disease
by
Li, Ya-nan
,
Guo, Wan-liang
,
Zhang, Dian
in
Algorithms
,
Artificial intelligence
,
Computer-aided medical diagnosis
2025
Background
X-rays are the most commonly used method for diagnosing Legg–Calvé–Perthes disease (LCPD) in children. However, in early-stage LCPD, X-rays only show subtle changes, making diagnosis highly dependent on the radiologist’s experience. The aim of this study was to develop and validate a combined radiomics and deep learning model based on anteroposterior and frog-leg lateral X-rays for identifying early LCPD patients.
Methods
We retrospectively collected imaging data of children diagnosed with early LCPD and normal control groups from two centers between January 2013 and December 2023. Logistic regression (LR), Support vector machine (SVM), and Extreme gradient boosting (XGBoost) algorithms were used to build radiomics and Deep Learning (DL) models, and the performance of individual models was compared. The development of the ensemble model involved a stacking strategy to integrate the best radiomics and DL models. The diagnostic performance of the combined model was compared with that of radiologists of varying experience levels. Model evaluation was conducted using metrics such as the area under the receiver operating characteristic curve (AUC), accuracy, sensitivity, and specificity. Finally, the model was validated using calibration and clinical decision curves.
Results
A total of 200 early LCPD hips (Center A,
n
= 157; Center B,
n
= 43) and 236 normal hips (Center A,
n
= 188; Center B,
n
= 48) were included. Among the individual radiomics and DL models, the XGBoost algorithm performed the best: the radiomics model achieved an AUC of 0.845 (95% CI, 0.758–0.933), and the DL model achieved an AUC of 0.848 (95% CI, 0.766–0.929). The ensemble model’s performance was further improved, with an AUC of 0.878 (95% CI, 0.810, 0.945). The combined model significantly outperformed junior radiologists. Calibration and clinical decision curves demonstrated that the combined model had high predictive value.
Conclusion
The integrated radiomics and DL model using both anteroposterior and frog-leg lateral X-rays demonstrated superior performance over individual radiomics or DL approaches, highlighting its potential as an effective tool for early screening of LCPD.
Journal Article
Using machine-learning models to predict extubation failure in neonates with bronchopulmonary dysplasia
2024
Aim
To develop a decision-support tool for predicting extubation failure (EF) in neonates with bronchopulmonary dysplasia (BPD) using a set of machine-learning algorithms.
Methods
A dataset of 284 BPD neonates on mechanical ventilation was used to develop predictive models via machine-learning algorithms, including extreme gradient boosting (XGBoost), random forest, support vector machine, naïve Bayes, logistic regression, and k-nearest neighbor. The top three models were assessed by the area under the receiver operating characteristic curve (AUC), and their performance was tested by decision curve analysis (DCA). Confusion matrix was used to show the high performance of the best model. The importance matrix plot and SHapley Additive exPlanations values were calculated to evaluate the feature importance and visualize the results. The nomogram and clinical impact curves were used to validate the final model.
Results
According to the AUC values and DCA results, the XGboost model performed best (AUC = 0.873, sensitivity = 0.896, specificity = 0.838). The nomogram and clinical impact curve verified that the XGBoost model possessed a significant predictive value. The following were predictive factors for EF: pO
2
, hemoglobin, mechanical ventilation (MV) rate, pH, Apgar score at 5 min, FiO
2
, C-reactive protein, Apgar score at 1 min, red blood cell count, PIP, gestational age, highest FiO
2
at the first 24 h, heart rate, birth weight, pCO
2
. Further, pO
2
, hemoglobin, and MV rate were the three most important factors for predicting EF.
Conclusions
The present study indicated that the XGBoost model was significant in predicting EF in BPD neonates with mechanical ventilation, which is helpful in determining the right extubation time among neonates with BPD to reduce the occurrence of complications.
Journal Article
Effects of different water quality regulators on growth performance, immunologic function, and domestic water quality of GIFT tilapia
2023
Water quality regulation is widely recognized as a highly effective strategy for disease prevention in the field of aquaculture, and it holds significant potential for the development of sustainable aquaculture. Herein, four water quality regulators, including potassium monopersulfate (KMPS), tetrakis hydroxymethyl phosphonium sulfate (THPS), bacillus subtilis (BS), and chitosan (CS), were added to the culture water of Oreochromis niloticus (GIFT tilapia) every seven days. Subsequently, the effects of these four water quality regulators on GIFT tilapia were comprehensively evaluated by measuring the water quality index of daily growth-related performance and immune indexes of GIFT tilapia. The findings indicated that implementing the four water quality regulators resulted in a decrease in the content of ammonia nitrogen, active phosphate, nitrite, total organic carbon (TOC), and chemical oxygen demand (COD) in the water. Additionally, these regulators were found to maintain dissolved oxygen (DO) levels and pH of the water effectively. Furthermore, using these regulators demonstrated positive effects on various physiological parameters of GIFT tilapia, including improvements in final body weight, weight gain rate (WGR), specific growth rate (SGR), condition factor (CF), feed conversion ratio (FCR), spleen index (SI), hepato-somatic index (HSI), immune cell count, the activity of antioxidant-related enzymes (Nitric oxide, NO and Superoxide dismutase, SOD), and mRNA expression levels of immunity-related factors (Tumor Necrosis Factor-alpha, TNF-[alpha] and Interleukin-1 beta, IL-1[beta]) in the liver and spleen. Notably, the most significant improvements were observed in the groups treated with the BS and CS water quality regulators. Moreover, BS and CS groups exhibited significantly higher serum levels of albumin (ALB) and total protein (TP) (P 0.05) compared to the control group. However, the KMPS and THPS groups of GIFT tilapia exhibited significantly higher serum levels of aspartate aminotransferase (AST), alanine transaminase (ALT), creatinine (CRE) and blood urea nitrogen (BUN) (P < 0.05), whereas they exhibited significantly decreased HSI (P < 0.05). In addition, the partially pathological observations revealed the presence of cell vacuolation, nuclear shrinkage, and pyknosis within the liver. In conclusion, these four water quality regulators, mainly BS and CS, could improve the growth performance and immunity of GIFT tilapia to varying degrees by regulating the water quality and then further increasing the expression levels of immune-related factors or the activity of antioxidant-related enzymes of GIFT tilapia. On the contrary, the prolonged use of KMPS and THPS may gradually diminish their growth-enhancing properties and potentially hinder the growth of GIFT tilapia.
Journal Article
MFEAFN: Multi-scale feature enhanced adaptive fusion network for image semantic segmentation
by
Zhang, Zhining
,
Li, Shusheng
,
Wan, Liang
in
Ablation
,
Biology and Life Sciences
,
Collection Review
2022
Low-level features contain spatial detail information, and high-level features contain rich semantic information. Semantic segmentation research focuses on fully acquiring and effectively fusing spatial detail with semantic information. This paper proposes a multiscale feature-enhanced adaptive fusion network named MFEAFN to improve semantic segmentation performance. First, we designed a Double Spatial Pyramid Module named DSPM to extract more high-level semantic information. Second, we designed a Focusing Selective Fusion Module named FSFM to fuse different scales and levels of feature maps. Specifically, the feature maps are enhanced to adaptively fuse these features by generating attention weights through a spatial attention mechanism and a two-dimensional discrete cosine transform, respectively. To validate the effectiveness of FSFM, we designed different fusion modules for comparison and ablation experiments. MFEAFN achieved 82.64% and 78.46% mIoU on the PASCAL VOC2012 and Cityscapes datasets. In addition, our method has better segmentation results than state-of-the-art methods.
Journal Article
Dynamic monitoring of biomass of rice under different nitrogen treatments using a lightweight UAV with dual image-frame snapshot cameras
by
Shou, Jianyao
,
Li, Xiaoran
,
Zhu, Yueming
in
Aboveground biomass
,
Agricultural economics
,
Agricultural management
2019
Background
Unmanned aerial vehicle (UAV)-based remote sensing provides a flexible, low-cost, and efficient approach to monitor crop growth status at fine spatial and temporal resolutions, and has a high potential to accelerate breeding process and improve precision field management.
Method
In this study, we discussed the use of lightweight UAV with dual image-frame snapshot cameras to estimate aboveground biomass (AGB) and panicle biomass (PB) of rice at different growth stages with different nitrogen (N) treatments. The spatial–temporal variations in the typical vegetation indices (VIs) and AGB were first investigated, and the accuracy of crop surface model (CSM) extracted from the Red Green Blue (RGB) images at two different stages were also evaluated. Random forest (RF) model for AGB estimation as well as the PB was then developed. Furthermore, variable importance and sensitivity analysis of UAV variables were performed to study the potential of improving model robustness and prediction accuracies.
Results
It was found that the canopy height extracted from the CSM (Hcsm) exhibited a high correlation with the ground-measured canopy height, while it was unsuitable to be independently used for biomass assessment of rice during the entire growth stages. We also observed that several VIs were highly correlated with AGB, and the modified normalized difference spectral index extracted from the multispectral image achieved the highest correlation. RF model with fusing RGB and multispectral image data substantially improved the prediction results of AGB and PB with the prediction of root mean square error (RMSEP) reduced by 8.33–16.00%. The best prediction results for AGB and PB were achieved with the coefficient of determination (r
2
), the RMSEP and relative RMSE (RRMSE) of 0.90, 0.21 kg/m
2
and 14.05%, and 0.68, 0.10 kg/m
2
and 12.11%, respectively. In addition, the result confirmed that the sensitivity analysis could simplify the prediction model without reducing the prediction accuracy.
Conclusion
These findings demonstrate the feasibility of applying lightweight UAV with dual image-frame snapshot cameras for rice biomass estimation, and its potential for high throughput analysis of plant growth-related traits in precision agriculture as well as the advanced breeding program.
Journal Article