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result(s) for
"Liber, Karsten"
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On Robustness of the Explanatory Power of Machine Learning Models: Insights From a New Explainable AI Approach Using Sensitivity Analysis
by
Doig, Lorne E.
,
Cordell, Blanchard
,
Panigrahi, Banamali
in
Artificial intelligence
,
class
,
Data points
2025
Machine learning (ML) is increasingly considered the solution to environmental problems where limited or no physico‐chemical process understanding exists. But in supporting high‐stakes decisions, where the ability to explain possible solutions is key to their acceptability and legitimacy, ML can fall short. Here, we develop a method, rooted in formal sensitivity analysis, to uncover the primary drivers behind ML predictions. Unlike many methods for explainable artificial intelligence (XAI), this method (a) accounts for complex multi‐variate distributional properties of data, common in environmental systems, (b) offers a global assessment of the input‐output response surface formed by ML, rather than focusing solely on local regions around existing data points, and (c) is scalable and data‐size independent, ensuring computational efficiency with large data sets. We apply this method to a suite of ML models predicting various water quality variables in a pilot‐scale experimental pit lake. A critical finding is that subtle alterations in the design of some ML models (such as variations in random seed, functional class, hyperparameters, or data splitting) can lead to different interpretations of how outputs depend on inputs. Further, models from different ML families (decision trees, connectionists, or kernels) may focus on different aspects of the information provided by data, despite displaying similar predictive power. Overall, our results underscore the need to assess the explanatory robustness of ML models and advocate for using model ensembles to gain deeper insights into system drivers and improve prediction reliability. Key Points We extend the sensitivity analysis (SA) paradigm to handle complex multivariate distributions encountered in machine learning (ML) We apply our new SA‐based method to explain the controls of various ML models developed for water quality predictions We show how different ML models may rely on different predictors and data signals despite exhibiting comparable predictive power
Journal Article
Chronic Radium-226 Bioaccumulation and Toxicity in the Aquatic Invertebrate Daphnia magna
by
Liber, Karsten
,
Lacroix-Durand, Charlotte
,
Janz, David
in
Animals
,
Aquatic ecosystems
,
aquatic invertebrates
2025
Mining operations in Canada, including uranium mining and milling, generate by-products containing radionuclides, including radium-226 (
226
Ra), a long-lived, bioaccumulative calcium (Ca
2+
) analog. Despite strict discharge regulations, there is limited evidence to suggest that current thresholds for
226
Ra adequately protect aquatic organisms. Furthermore, Canada lacks a federal water quality guideline for
226
Ra, underscoring the need for protective limits to safeguard aquatic ecosystems. Hence, this research aimed to generate data on
226
Ra toxicity to the model aquatic invertebrate
Daphnia magna
. For this purpose, two 21-day chronic toxicity tests with
D. magna
were conducted, with survival and reproduction as the endpoints, as well as a reduced water hardness experiment, a multigenerational study, and a bioaccumulation assay. These experiments demonstrated that a high activity concentration (nominal 50 Bq/L) of
226
Ra can significantly impact the survival of
D. magna.
226
Ra was also found to bioaccumulate in
D. magna
with a BAF of 72.8. Since the Canadian
Metal and Diamond Mining Effluent Regulations
(MDMER) monthly mean effluent limit is currently set at 0.37 Bq
226
Ra /L, the limit for composite samples at 0.74 Bq/L
226
Ra, and the limit for grab samples at 1.11 Bq/L
226
Ra, it is unlikely that toxic effects to aquatic cladocerans like
D. magna
from
226
Ra will be observed downstream of Canadian mines and mills.
Journal Article
Chronic Toxicity of Surface Water from a Canadian Oil Sands End Pit Lake to the Freshwater Invertebrates Chironomus dilutus and Ceriodaphnia dubia
2020
Permanent reclamation of tailings generated by surface mining in the Canadian oil sands may be achieved through the creation of end pit lakes (EPLs) in which tailings are stored in mined-out pits and capped with water. However, these tailings contain high concentrations of dissolved organics, metals, and salts, and thus surface water quality of EPLs is a significant concern. This is the first study to investigate the chronic toxicity of surface water from Base Mine Lake (BML), the Canadian oil sands first large-scale EPL, to aquatic invertebrates that play a vital role in the early development of aquatic ecosystems (Chironomus dilutus and Ceriodaphnia dubia). After exposure of C. dilutus larvae for 23 days and C. dubia neonates for 8 days, no mortality was observed in any treatment with whole BML surface water. However, the emergence of C. dilutus adults was delayed by nearly 1 week, and their survival was significantly reduced (36%) compared with the controls. Reproduction (fecundity) of C. dubia was reduced by 20% after exposure to 2014 BML surface water; however, the effect was not observed after exposure to BML surface water collected a year later in 2015. Despite some adverse effects, the results of this study indicate that BML surface water quality is improving over time and is able to support certain salt-tolerant aquatic organisms. Because salinity within BML will persist for decades without manual intervention, the ecological development of the lake will likely resemble that of a brackish or estuarine ecosystem with reduced diversity.
Journal Article
Toxicity Evaluation of Water and Pore Water from a Pilot-Scale Pit Lake in the Alberta Oil Sands Region to Daphnia Species
by
Ezugba, Immanuela
,
Doig, Lorne
,
Panigrahi, Banamali
in
Acute toxicity
,
Ammonia
,
Aquatic communities
2024
Significant amounts of tailings and oil sands process-affected water (OSPW) are generated by bitumen extraction in the Alberta Oil Sands region. These by-products are potentially toxic to aquatic organisms and require remediation. The study site was Lake Miwasin, a pilot-scale pit lake integrated into broader reclamation efforts. It consists of treated tailings overlaid with blended OSPW and freshwater, exhibiting meromictic conditions and harboring aquatic communities. This study assessed the potential toxicity of Lake Miwasin surface water (LMW) and pore water (LMP) using saline-acclimated Cladocera, including lab strains of Daphnia magna and Daphnia pulex and native Daphnia species collected in brackish Humboldt Lake (HL) and Lake Miwasin (LM). The pore water evaluation was used to represent a worst-case water quality scenario during pond stratification. Additionally, the inclusion of native organisms incorporated site-specific adaptations and regional sensitivity into the toxicity evaluation. Our results showed that LMW did not display acute or chronic toxicity to lab species and native Daphnia sp. (HL). Conversely, LMP was acutely toxic to both lab species and native D. pulex (LM). In chronic tests (12 days exposure), LMP negatively affected reproduction in D. pulex (lab), with reductions in the number of offspring. Limited ability to acclimated organisms to the high salinity levels of LMP resulted in a shortened exposure duration for the chronic toxicity test. In addition to salinity being identified as a stressor in LMP, toxicity identification evaluation (TIE) phase I findings demonstrated that the observed toxicity for D. magna (lab) and D. pulex (LM, native) might be attributed to ammonia and metals in LMP. Further investigations are required to confirm the contributions of these stressors to LMP toxicity.
Journal Article
Copper-Induced Ionoregulatory Disturbance, Histopathology, and Transcriptome Responses in Freshwater Mussel (Anodonta woodiana) Gills
2023
Copper (Cu) contamination has become a severe problem in freshwater environments worldwide. The freshwater mussel Anodonta woodiana is used as a unique bioindicator to monitor Cu contamination in freshwater environments. However, Cu toxicity and response mechanisms in A. woodiana are still largely unknown. A sublethal acute exposure experiment (2.0 mg/L Cu exposure for 72 h) was conducted to investigate the effects of Cu bioaccumulation on ionoregulatory homeostasis, histological features, and transcriptome responses using A. woodiana gills as indicator tissue. The gill bioaccumulation capacity was up to 474. Cu bioaccumulation decreased Na+ and Mg2+ concentrations (p < 0.05) by 82% and 17%, respectively, and induced cilia loss, epithelial desquamation, and filament atrophy of the gills. Transcriptome analysis identified 3160 differentially expressed genes (DEGs), including 1870 upregulated and 1290 downregulated genes. GO enrichment analysis showed that cellular processes, metabolic processes, biological regulation, and responses to stimuli contained the most DEGs in the biological processes. KEGG pathway analysis showed that apoptosis, arginine and proline metabolism, the toll-like receptor signaling pathway, apoptosis-multiple species, histidine metabolism, beta-alanine metabolism, cytokine–cytokine receptor interaction, and the p53 signaling pathway were significantly enriched. These findings provide comprehensive evidence for exploring Cu toxicity and response mechanisms in freshwater mussels.
Journal Article
Acute and Chronic Toxicity of Imidacloprid to the Aquatic Invertebrates Chironomus tentans and Hyalella azteca under Constant- and Pulse-Exposure Conditions
by
Stoughton, Sarah J.
,
Liber, Karsten
,
Culp, Joseph
in
acute toxicity
,
administration & dosage
,
adults
2008
The toxicity of imidacloprid, a nicotinic mimic insecticide, to the aquatic invertebrates
Chironomus tentans
and
Hyalella azteca
, was first evaluated in static 96-hour tests using both technical material (99.2% pure) and Admire
®
, a commercially available formulated product (240 g a.i. L
-1
). The 96-h lethal concentration (LC)50 values for technical imidacloprid and Admire
®
were 65.43 and 17.44 μg/L, respectively, for
H. azteca
, and 5.75 and 5.40 μg/L, respectively, for
C. tentans
. Admire
®
was subsequently used in 28-day chronic tests with both species. Exposure scenarios consisted of a constant- and a pulse-exposure regime. The pulse exposure lasted for four days, after which time the animals were transferred to clean water for the remaining 24 days of the study. Assessments were made on both day 10 and day 28. In the
C. tentans
under constant exposure, larval growth on day 10 was significantly reduced at 3.57 μg/L imidacloprid, the lowest-observed-effect concentration (LOEC). The no-observed-effect concentration (NOEC) and LOEC for the 28-day exposure duration (adult survival and emergence) were 1.14 and greater than 1.14 μg/L, respectively; the associated LC50 and LC25 were 0.91 and 0.59 μg/L, respectively. The LOEC for the pulse treatment was greater than 3.47 μg/L, but the day 10 LC25 was 3.03 μg/L. In the
H. azteca
tests, the day 10 and 28 constant exposure, as well as the day 28 pulse exposure, LOEC (survival) values were similar at 11.95, 11.46, and 11.93 μg/L, respectively. The day 10 and 28 constant exposure effective concentration (EC)25s (dry weight) were also similar, at 6.22 and 8.72 μg/L, respectively, but were higher than the pulse-exposure day 10 LOEC and EC25 (dry weight) values of 3.53 and 2.22 μg/L, respectively. Overall,
C. tentans
was more sensitive to acute and chronic imidacloprid exposure, but less sensitive to a single pulse, than
H. azteca
. Chronic, low-level exposure to imidacloprid may therefore reduce invertebrate survival and growth, but organisms are able to recover from short-term pulse exposure to similar imidacloprid concentrations if the stressor is removed after four days.
Journal Article
Effects of insecticide exposure on feeding inhibition in mayflies and oligochaetes
2007
The present study examined the effects of pulse exposures of the insecticide imidacloprid on the mayfly, Epeorus longimanus Eaton (Family Heptageniidae), and on an aquatic oligochaete, Lumbriculus variegatus Müller (Family Lumbriculidae). Pulse exposures of imidacloprid are particularly relevant for examination, because this insecticide is relatively soluble (510 mg/L) and is most likely to be at effect concentrations during runoff events. Experiments examined the recovery of organisms after a 24‐h pulse exposure to imidacloprid over an environmentally realistic range of concentrations (0, 0.1, 0.5, 1, 5, and 10 μg/L). Effects on feeding were measured by quantifying the algal biomass consumed by mayflies or foodstuffs egested by oligochaetes. Imidacloprid was highly toxic, with low 24‐h median lethal concentrations (LC50s) in early mayfly instars (24‐h LC50, 2.1 ± 0.8 μg/L) and larger, later mayfly instars (24‐h LC50, 2.1 ± 0.5 μg/L; 96‐h LC50, 0.65 ± 0.15 μg/L). Short (24‐h) pulses of imidacloprid in excess of 1 μg/L caused feeding inhibition, whereas recovery (4 d) varied, depending on the number of days after contaminant exposure. In contrast to mayflies, oligochaetes were relatively insensitive to imidacloprid during the short (24‐h) pulse; however, immobility of oligochaetes was observed during a 4‐d, continuous‐exposure experiment, with 96‐h median effective concentrations of 6.2 ± 1.4 μg/L. Overall, imidacloprid reduced the survivorship, feeding, and egestion of mayflies and oligochaetes at concentrations greater than 0.5 but less than 10 μg/L. Inhibited feeding and egestion indicate physiological and behavioral responses to this insecticide.
Journal Article
Comparative analysis of cadmium uptake and distribution in contrasting canadian flax cultivars
by
Liber, Karsten
,
Diederichsen, Axel
,
Booker, Helen M.
in
Biomedical and Life Sciences
,
Biomedicine
,
Breeding
2020
Objective
Humans consume low quantities of cadmium (Cd), a non-nutritive and potentially toxic heavy metal, primarily via the dietary intake of grains. A trial experiment was conducted to investigate physiological and developmental differences in Cd content in four flax cultivars (‘AC Emerson’, ‘Flanders’, ‘CDC Bethune’, and ‘AC McDuff’) as part of a study to provide information that will assist in the breeding of low Cd-accumulating flax cultivars. Our objective was to identify varietal differences in the uptake and distribution of Cd in various tissues among flax cultivars grown in naturally Cd-containing soil in a controlled environment.
Results
Cadmium concentration was dependent on genotype, developmental stage, and tissue type, as well as their interaction. Cadmium concentration was higher in roots and leaves, relative to all other tissues, with a general trend of decreasing Cd content over time within leaves and stems. Notably, the concentration of Cd was higher in ‘AC Emerson’ relative to ‘AC McDuff’ across tissues and ages, including the seeds, while the concentration of ‘Flanders’ was higher than in ‘AC McDuff’ in seeds and other reproductive organs but similar in roots and leaves. The results suggest varietal differences in the mechanisms that determine Cd content in seeds.
Journal Article
Laboratory and In situ Selenium Bioaccumulation Assessment in the Benthic Macroinvertebrates Hyalellaazteca and Chironomusdilutus
by
Liber, Karsten
,
Peixoto Mendes, Maíra
,
Flores, Beatriz Cupe
in
Bioaccumulation
,
Dilution
,
Exposure
2024
Selenium (Se) bioaccumulation and toxicity in aquatic vertebrates have been thoroughly investigated. Limited information is available on Se bioaccumulation at the base of aquatic food webs. In this study, we evaluated Se bioaccumulation in two benthic macroinvertebrates (BMI), Hyalella azteca and Chironomus dilutus raised in the laboratory and caged in-situ to a Canadian boreal lake e (i.e., McClean Lake) that receives continuous low-level inputs of Se (< 1 μg/L) from a uranium mill. Additional Se bioaccumulation assays were conducted in the laboratory with these BMI to (i) confirm field results, (ii) compare Se bioaccumulation in lab-read and native H. azteca populations and (iii) identify the major Se exposure pathway (surface water, top 1 cm and top 2–3 cm sediment layers) leading to Se bioaccumulation in H. azteca. Field and laboratory studies indicated overall comparable Se bioaccumulation and trophic transfer factors (TTFs) in co-exposed H. azteca (whole-body Se 0.9–3.1 µg/g d.w; TTFs 0.6–6.3) and C. dilutus (whole-body Se at 0.7–3.2 µg Se/g d.w.; TTFs 0.7–3.4). Native and lab-reared H. azteca populations exposed to sediment and periphyton from McClean Lake exhibited similar Se uptake and bioaccumulation (NLR, p = 0.003; 4.1 ± 0.8 µg Se/g d.w), demonstrating that lab-reared organisms are good surrogates to assess on-site Se bioaccumulation potential. The greater Se concentrations in H. azteca exposed to the top 1–3 cm sediment layer relative to waterborne exposure, corroborates the importance of the sediment-detrital pathway leading to greater Se bioaccumulation potential to higher trophic levels via BMI.
Journal Article
Direct and indirect responses of a freshwater food web to a potent synthetic oestrogen
by
Rennie, Michael D.
,
Kidd, Karen A.
,
Liber, Karsten
in
Animals
,
Aquatic Toxicology
,
Catostomus
2014
Endocrine-disrupting chemicals (EDCs) in municipal effluents directly affect the sexual development and reproductive success of fishes, but indirect effects on invertebrate prey or fish predators through reduced predation or prey availability, respectively, are unknown. At the Experimental Lakes Area in northwestern Ontario, Canada, a long-term, whole-lake experiment was conducted using a before-after-control-impact design to determine both direct and indirect effects of the synthetic oestrogen used in the birth control pill, 17α-ethynyloestradiol (EE2). Algal, microbial, zooplankton and benthic invertebrate communities showed no declines in abundance during three summers of EE2 additions (5–6 ng l−1), indicating no direct toxic effects. Recruitment of fathead minnow (Pimephales promelas) failed, leading to a near-extirpation of this species both 2 years during (young-of-year, YOY) and 2 years following (adults and YOY) EE2 additions. Body condition of male lake trout (Salvelinus namaycush) and male and female white sucker (Catostomus commersonii) declined before changes in prey abundance, suggesting direct effects of EE2 on this endpoint. Evidence of indirect effects of EE2 was also observed. Increases in zooplankton, Chaoborus, and emerging insects were observed after 2 or 3 years of EE2 additions, strongly suggesting indirect effects mediated through the reduced abundance of several small-bodied fishes. Biomass of top predator lake trout declined by 23–42% during and after EE2 additions, most probably an indirect effect from the loss of its prey species, the fathead minnow and slimy sculpin (Cottus cognatus). Our results demonstrate that small-scale studies focusing solely on direct effects are likely to underestimate the true environmental impacts of oestrogens in municipal wastewaters and provide further evidence of the value of whole-ecosystem experiments for understanding indirect effects of EDCs and other aquatic stressors.
Journal Article