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Marine biodiversity monitoring in the Mediterranean’s increasingly threatened ecosystems is crucial for effective ecosystem conservation and management. Here, we leveraged the Mediterranean International Trawl Survey program (MEDITS) to implement eDNA sampling through the recently tested ‘metaprobe’ procedure and characterize fish assemblages in three separate areas off the Italian coasts: Northern Adriatic Sea (NoAS), Ligurian and Northern Tyrrhenian Sea (LNTS), and Sardinian Sea (SaS). By combining the information from two homologous mitochondrial 12S metabarcodes––i.e., Elas02 and Tele02 targeting elasmobranchs and teleosts, respectively––we identified 108 species, over 60% of which overlapped with those caught by the trawl net. We produced an accurate reconstruction of fish community composition of the examined sites, reflecting differences in species assemblages linked with both geographic area and depth range. Metaprobe eDNA data consistently returned a biodiversity ‘bonus’ mostly consisting of pelagic taxa not captured through bottom trawl surveys, including rare and endangered taxa (e.g., elasmobranchs). Overall, the spatial characterisation of the assemblages across the surveyed areas was better delineated and more robust using eDNA metabarcoding than trawl data. Our results support the operationalisation of the metaprobe as a simple, inexpensive, versatile sampling tool, in association with pre-existing ship surveys, to overcome many of the limitations of marine data collection and strengthen marine management.

In the Mediterranean Sea, Aristaeomorpha foliacea and Aristeus antennatus are the most important target species of deep-sea trawl fisheries. Previous studies performed in several areas of the Mediterranean highlighted the key role played by both environmental factors, such as temperature, and anthropogenic activities, such as fishing, in affecting the abundance and distribution of the two species. The present study is aimed at investigating the effects of environmental and anthropogenic drivers on the abundance and spatial distribution of A. foliacea and A. antennatus in the Ligurian and northern and central Tyrrhenian Seas (NW Mediterranean). To this end, the time series of MEDITS trawl survey data (1994–2015) were analyzed together with environmental variables, namely sea surface temperature, current speed, and fishing effort by means of GAM. The results show that fishing plays an important role in shaping the spatial distribution of the two species. A. antennatus is prevalent where fishing effort is higher; this can be related to the higher resilience of blue and red shrimp to fishery impact. In contrast, high temperatures are associated to the prevalence of A. foliacea. Therefore, the abundance and spatial distribution of this species is mainly driven by temperature.

The main characteristics concerning the distribution of two of the most important decapod crustaceans of commercial interest in the Mediterranean Sea, the deep-water rose shrimp, Parapenaeus longirostris, and the Norway lobster, Nephrops norvegicus, are studied in the European Mediterranean waters. The study is based on data collected under the MEDITS trawl surveys from 1994 to 2015 from the Gibraltar Straits to the northeastern Levantine Basin (Cyprus waters). The observed differences can be interpreted as different responses to environmental drivers related to the differing life history traits of the two species. In fact, N. norvegicus is a long-living, benthic burrowing species with low growth and mortality rates, while P. longirostris is an epibenthic, short-living species characterized by higher rates of growth and mortality.

The present study provides updated information on the occurrence, abundance and biomass distribution patterns and length frequencies of Merluccius merluccius in the Mediterranean Sea, by analysing a time series of data from the Mediterranean International Trawl Surveys (MEDITS) from 1994 to 2015. The highest values of abundance and biomass were observed in the Sardinian Seas. The use of a generalized additive model, in which standardized biomass indices (kg km–2) were analysed as a function of environmental variables, explained how ecological factors could affect the spatio-temporal distribution of European hake biomass in the basin. High biomass levels predicted by the model were observed especially at 200 m depth and between 14°C and 18°C, highlighting the preference of the species for colder waters. A strong reduction of biomass was observed since the year 2009, probably due to the strengthening of the seasonal thermocline that had greatly reduced the availability of food. The general decrease in biomass of several stocks of anchovy and sardine, preys of European hake, might be indirectly connected to the decreasing biomass detected in the present study. The length analysis shows median values lower than 200 mm total length of most of the investigated areas.

Mortality resulting from interactions with fishing gears represent an important threat to sensitive species globally. In this study, we address this issue by defining five species groups of marine megafauna (marine mammals, seabirds, demersal and pelagic elasmobranchs, and sea turtles), and conducting a productivity-susceptibility analysis (PSA) within the context of data-limited fisheries in the Mediterranean and Black Sea. Although there are significant differences among species within each group, this approach has been considered much more direct and functional for management purposes. The productivity ( P ) of each species group was determined by evaluating a set of attributes averaged across representative species within each group. Species groups’ susceptibility ( S ) to bycatch was assessed through a comprehensive review of existing literature and expert judgment, considering a series of semi-quantitative attributes. Our analysis identified areas and fishing gears posing potential risks to the species groups assessed, highlighting that sea turtles and elasmobranchs face the potential risk of incidental captures from various fishing gears operating in both neritic (bottom trawls, set nets and bottom longlines) and pelagic (drifting longlines) environments. Marine mammals exhibit moderate risk across most fishing gears, with particular concern for the harbour porpoise Phocoena phocoena relicta in the Black Sea, primarily due to the interaction with set nets, which can severely impact entire population even capturing few specimens due the species low productivity. Seabirds face reduced impact with fishing activities, irrespective of the type of gear examined or the specific area under investigation. Overall, our study highlights the specific basins and fishing gears requiring focused management measures, mitigation strategies, and enhanced monitoring activities to mitigate the impacts of bycatch on vulnerable marine megafauna.

The high species richness, coupled with high proportion of endemism, makes the Mediterranean one of the world’s ‘biodiversity hotspots’. However, the continuous increase in fisheries in the last few decades has led to the overexploitation of their main commercial stocks. Using fishery-independent data collected under the framework of the MEDITS trawl surveys carried out over the last 20 years, we study the demersal fish diversity pattern in the Mediterranean at a large spatial and temporal scale to determine whether it is being affected by the general fishing overexploitation of the demersal resources. The detected diversity trends are compared with the spatio-temporal variation in bottom trawl fishing effort in the Mediterranean. Our results show a stability and even recovery of demersal fish diversity in the Mediterranean together with higher diversity values on the continental shelves of the Balearic Islands, Sardinia, Sicily and the Aegean Sea. At large temporal and spatial scales, the high diversity of demersal assemblages in the Mediterranean is associated with a reduction in bottom trawl fishing effort. The inclusion of species other than target ones through diversity indices is important in the implementation of an ecosystem-based fisheries management.

This study aimed to test the effectiveness of a “guarding net”, a device placed at the bottom of a trammel net, for reducing unwanted catches in the caramote prawn trammel net fishery of the Ligurian Sea. This specialized and profitable fishery is affected by unwanted catches that generate high discard rates and damage to the nets, with environmental impacts and costs for fishermen. The experimental study consisted in comparing the catches of a standard trammel net (STN) with those of two “experimental” trammel nets, e.g. STNs provided with a guarding net of 19 cm (TGN20) and 24 cm height (TGN25), respectively. The guarding net, a strip of gillnet placed at the bottom of the net, can be considered a by-catch reducer device (BRD). Some fishermen of the investigated fishery have been using this device for several years. The results of the 15 experimental fishing trials performed from June to July 2016 indicate that the guarding nets significantly reduce discards (e.g. crabs and other invertebrates); the biomass of the unwanted species caught was 75% lower than that produced by the STN. The catch rates of the target species obtained with TGN20 and TGN25 were also significantly lower than those of the STN, though of a lesser amount. Nonetheless, this economic loss can be compensated by the decrease in sorting time and material and labour costs that can be achieved using the guarding net.

In the Mediterranean, experiments and technical measures aimed at improving the selectivity of bottom trawl nets mostly concern modifications to the codend. Grids have been tested in various areas, but have not been adopted for management purposes so far. The present study aims to evaluate whether the adoption of diamond meshes turned by 90° (T90 configuration) and a selection grid with 2 cm bar spacing, both placed in the extension piece of a commercial bottom trawl net, can contribute in reducing the capture of specimens under the Minimum Conservation Reference Size (MCRS) for the main commercial species. The results indicated that the T90 configuration has no effect compared to the commercial net commonly used by fishers. The grid showed a reduction of the catches of European hake individuals between 11 and 19 cm Total Length (TL). However, the use of this device reduced the catch of many species, such as red mullet, deep-water rose shrimp and broad tail short fin squid. This reduction was observed also for specimens above MCRS. In conclusion, the T90 applied to the extension piece does not provide any improvement in selectivity, contrary to what has been observed when the T90 is placed at the codend. In contrast, the grid could be a possible way to increase selectivity. However, the use of grid should be further investigated to identify settings that can avoid the loss of a substantial fraction of commercial catch.

The recent establishment of the \"landing obligation\" under the reformed EU Common Fishery Policy has the twofold objective of reducing the excessive practice of discarding unwanted catch at sea and encouraging more selective and sustainable fisheries. Within this context, the awareness of the spatial distribution of potential unwanted catches is important for devising management measures aimed to decrease discards. This study analyzed the distribution of Hot Spot density areas of demersal fish and crustaceans below the Minimum Conservation Reference Size (MCRS) in four different southern European seas: continental Portuguese coast, Catalan Sea, South of Sicily, Liguria and northern Tyrrhenian Seas using both bottom trawl survey data and information on the spatial distribution of commercial fisheries. Critical areas for discarding were identified as zones where the highest densities of individuals below MCRS were consistently recorded throughout a series of years. Results clearly showed a patchy distribution of undersized individuals in each investigated area, highlighting the overlap between high density patches of both discards and fishing effort. The present findings provide a relevant knowledge for supporting the application of spatial-based management actions, such as the designation of Fisheries Restricted Areas (FRAs), in order to minimize the by-catch of undersized specimens and improve the sustainability of demersal fisheries

Most studies on European hake focus on the recruitment process and nursery areas, whereas the information is comparatively limited on the ecology of the juvenile stage (ca. second year of life)—the one most exploited by the Mediterranean trawl fisheries. Using information of the MEDITS programme, we provide a spatial and temporal assessment of the influence of body size and growth on hake survival from recruits (age 0) to juveniles (age 1), along with the impact of surface temperature and chlorophyll variability. At a biogeographic scale, size-dependent survival is supported, with areas with higher mean length of recruits and juveniles yielding higher survival. A similar pattern was observed at interannual level in some western Mediterranean areas, also mediated by a density-dependent effect on growth. However, the most recurrent inter-annual pattern was a negative effect of size on survival, which could be attributed to potential ontogenetic changes in catchability and underrepresentation of intra-annual recruitment pulses that are seasonally inaccessible to the MEDITS survey. Results also evidence that survival in the Alboran and Adriatic seas is dependent on the primary production variability, and that Corsica and Sardinia could be potential feeding grounds receiving juveniles from neighbouring areas. The present study reveals the importance of size- and growth-dependent survival in the juvenile stage of European hake in the Mediterranean Sea.