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This article presents a comprehensive subpixel water mapping algorithm to automatically produce routinely open water fraction maps in the Tibetan Plateau (TP) with the Moderate Resolution Imaging Spectroradiometer (MODIS). A multi-index threshold endmember extraction method was applied to select the endmembers from MODIS images. To incorporate endmember variability, an endmember selection strategy, called the combined use of typical and neighboring endmembers, was adopted in multiple endmember spectral mixture analysis (MESMA), which can assure a robust subpixel water fractions estimation. The accuracy of the algorithm was assessed at both the local scale and regional scale. At the local scale, a comparison using the eight pairs of MODIS/Landsat 8 Operational Land Imager (OLI) water maps demonstrated that subpixels water fractions were well retrieved with a root mean square error (RMSE) of 7.86% and determination coefficient (R2) of 0.98. At the regional scale, the MODIS water fraction map in October 2014 matches well with the TP lake data set and the Global Lake and Wetland Database (GLWD) in both latitudinal and longitudinal distribution. The lake area estimation is more consistent with the reference TP lake data set (difference of −3.15%) than the MODIS Land Water Mask (MOD44W) (difference of −6.39%).

Highly accurate observations at various scales on the land surface are urgently needed for the studies of many areas, such as hydrology, meteorology, and agriculture. With the rapid development of remote sensing techniques, remote sensing has had the capacity of monitoring many factors of the Earth＇s land surface. Especially, the space-borne microwave remote sensing systems have been widely used in the quantitative monitoring of global snow, soil moisture, and vegetation parameters with their all-weather, all-time observation capabilities and their sensitivities to the characteristics of land surface factors. Based on the electromagnetic theories and microwave radiative transfer equations, researchers have achieved great successes in the mi- crowave remote sensing studies for different sensors in recent years. This article has systematically reviewed the progresses on five research areas including microwave theoretical modeling, microwave inversion on soil moisture, snow, vegetation and land surface temperatures. Through the further enrichment of remote sensing datasets and the development of remote sensing theories and inversion techniques, remote sensing including microwave remote sensing will play a more important role in the studies and applications of the Earth systems.

The anthocyanin content in leaves can reveal valuable information about a plant’s physiological status and its responses to stress. Therefore, it is of great value to accurately and efficiently determine anthocyanin content in leaves. The selection of calibration method is a major factor which can influence the accuracy of measurement with visible and near infrared (NIR) spectroscopy. Three multivariate calibrations including principal component regression (PCR), partial least squares regression (PLSR), and back-propagation neural network (BPNN) were adopted for the development of determination models of leaf anthocyanin content using reflectance spectra data (450–600 nm) in Prunus cerasifera and then the performance of these models was compared for three multivariate calibrations. Certain principal components (PCs) and latent variables (LVs) were used as input for the back-propagation neural network (BPNN) model. The results showed that the best PCR and PLSR models were obtained by standard normal variate (SNV), and BPNN models outperformed both the PCR and PLSR models. The coefficient of determination (R 2 ), the root mean square error of prediction (RMSE p ), and the residual prediction deviation (RPD) values for the validation set were 0.920, 0.274, and 3.439, respectively, for the BPNN-PCs model, and 0.922, 0.270, and 3.489, respectively, for the BPNN-LVs model. Visible spectroscopy combined with BPNN was successfully applied to determine leaf anthocyanin content in P. cerasifera and the performance of the BPNN-LVs model was the best. The use of the BPNN-LVs model and visible spectroscopy showed significant potential for the nondestructive determination of leaf anthocyanin content in plants.

Glomalin-related soil protein (GRSP), as an important component of soil organic carbon (SOC) pool, is a glycoprotein produced by the hyphae of arbuscular mycorrhizal fungi (AMF), which play a vital role in carbon and nutrient cycling in forest ecosystem. Here we investigated the spatial distribution of GRSP in plant community of the dominated species not associated with AMF based on a typical coniferous and broad-leaved temperate forest in Mt. Changbai, Northeastern China. Spatial distribution of GRSP including easily extractable GRSP (EEG) and total GRSP (TG) is represented by Moran’s I on different soil depth among seven soil layers of 0-5 cm, 5-10 cm, 10-20 cm, 20-30 cm, 30-50 cm, 50-70 cm and 70-100 cm. The concentrations of EEG and TG decreased with the increase of soil depth according to a logarithmic function. The Moran’s I coefficient of GRSP was negative in all soil layers except TG in 20-30 cm and 50-70 cm soil layers. When EEG and TG were considered, the Moran’s I coefficient was positive in majority of soil layers within the separation distance of less than 4 m but in soil layers of 10-20 cm and 20-30 cm for EEG and in 30-50 cm for TG. The largest Moran’s I coefficient including EEG and TG was observed in the soil layer of 5-10 cm. The spatial distribution of GRSP was discrete in typical coniferous and broad-leaved temperate forest, and was affected by mycorrhizal colonization rate, soil organic carbon and total nitrogen.   *** In press - Online First. Article has been peer reviewed, accepted for publication and published online without pagination. It will receive pagination when the issue will be ready for publishing as a complete number (Volume 47, Issue 4, 2019). The article is searchable and citable by Digital Object Identifier (DOI). DOI link will become active after the article will be included in the complete issue. ***

Ruminants are a diverse group of mammals that includes families containing well-known taxa such as deer, cows, and goats. However, their evolutionary relationships have been contentious, as have the origins of their distinctive digestive systems and headgear, including antlers and horns (see the Perspective by Ker and Yang). To understand the relationships among ruminants, L. Chen et al. sequenced 44 species representing 6 families and performed a phylogenetic analysis. From this analysis, they were able to resolve the phylogeny of many genera and document incomplete lineage sorting among major clades. Interestingly, they found evidence for large population reductions among many taxa starting at approximately 100,000 years ago, coinciding with the migration of humans out of Africa. Examining the bony appendages on the head—the so-called headgear—Wang et al. describe specific evolutionary changes in the ruminants and identify selection on cancer-related genes that may function in antler development in deer. Finally, Lin et al. take a close look at the reindeer genome and identify the genetic basis of adaptations that allow reindeer to survive in the harsh conditions of the Arctic. Science , this issue p. eaav6202 , p. eaav6335 , p. eaav6312 ; see also p. 1130 The genes underlying the development of bony antlers and horns in ruminants are examined. Ruminants are the only extant mammalian group possessing bony (osseous) headgear. We obtained 221 transcriptomes from bovids and cervids and sequenced three genomes representing the only two pecoran lineages that convergently lack headgear. Comparative analyses reveal that bovid horns and cervid antlers share similar gene expression profiles and a common cellular basis developed from neural crest stem cells. The rapid regenerative properties of antler tissue involve exploitation of oncogenetic pathways, and at the same time some tumor suppressor genes are under strong selection in deer. These results provide insights into the evolutionary origin of ruminant headgear as well as mammalian organ regeneration and oncogenesis.

Abstract Aging is a multifaceted and complicated process, manifested by a decline of normal physiological functions across tissues and organs, leading to overt frailty, mortality, and chronic diseases, such as skeletal, cardiovascular, and cognitive disorders, necessitating the development of practical therapeutic approaches. Stem cell aging is one of the leading theories of organismal aging. For decades, mesenchymal stem/stromal cells (MSCs) have been regarded as a viable and ideal source for stem cell-based therapy in anti-aging treatment due to their outstanding clinical characteristics, including easy accessibility, simplicity of isolation, self-renewal and proliferation ability, multilineage differentiation potentials, and immunomodulatory effects. Nonetheless, as evidenced in numerous studies, MSCs undergo functional deterioration and gradually lose stemness with systematic age in vivo or extended culture in vitro, limiting their therapeutic applications. Even though our understanding of the processes behind MSC senescence remains unclear, significant progress has been achieved in elucidating the aspects of the age-related MSC phenotypic changes and possible mechanisms driving MSC senescence. In this review, we aim to summarize the current knowledge of the morphological, biological, and stem-cell marker alterations of aging MSCs, the cellular and molecular mechanisms that underlie MSC senescence, the recent progress made regarding the innovative techniques to rejuvenate senescent MSCs and combat aging, with a particular focus on the interplay between aging MSCs and their niche as well as clinical translational relevance. Also, we provide some promising and novel directions for future research concerning MSC senescence. Graphical Abstract Mesenchymal stem/stromal cell (MSC) senescence is manifested by distinctive phenotypic changes, including flattened and enlarged cell morphology, SASP, biomarker changes, telomere attrition, epigenetic alterations, impaired differentiation potential, and declines in proliferation ability. Abbreviations: MSC, mesenchymal stem/stromal cell; RUNX2, runt-related transcription factor 2; PPAR-γ, peroxisome proliferator-activated receptor-γ; SASP, senescence-associated secretory phenotype; IL-6/8, interleukin-6/8; SA-β-gal, senescence-associated beta-galactosidase; pRB, phosphorylated retinoblastoma.

Muntjac deer have experienced drastic karyotype changes during their speciation, making it an ideal model for studying mechanisms and functional consequences of mammalian chromosome evolution. Here we generated chromosome-level genomes for Hydropotes inermis (2n = 70), Muntiacus reevesi (2n = 46), female and male M. crinifrons (2n = 8/9) and a contig-level genome for M. gongshanensis (2n = 8/9). These high-quality genomes combined with Hi-C data allowed us to reveal the evolution of 3D chromatin architectures during mammalian chromosome evolution. We find that the chromosome fusion events of muntjac species did not alter the A/B compartment structure and topologically associated domains near the fusion sites, but new chromatin interactions were gradually established across the fusion sites. The recently borne neo-Y chromosome of M. crinifrons , which underwent male-specific inversions, has dramatically restructured chromatin compartments, recapitulating the early evolution of canonical mammalian Y chromosomes. We also reveal that a complex structure containing unique centromeric satellite, truncated telomeric and palindrome repeats might have mediated muntjacs’ recurrent chromosome fusions. These results provide insights into the recurrent chromosome tandem fusion in muntjacs, early evolution of mammalian sex chromosomes, and reveal how chromosome rearrangements can reshape the 3D chromatin regulatory conformations during species evolution. Muntjac deer underwent rapid species radiation and dramatic chromosome fusions within a short period of time. Here the authors reveal that repeat sequences likely mediated illegitimate recombination to result in chromosome fusions and that 3D chromatin architecture around fusion sites have no significant change, while significant interactions across fusion sites were gradually established after speciation.

Ruminants are a diverse group of mammals that includes families containing well-known taxa such as deer, cows, and goats. However, their evolutionary relationships have been contentious, as have the origins of their distinctive digestive systems and headgear, including antlers and horns (see the Perspective by Ker and Yang). To understand the relationships among ruminants, L. Chen et al. sequenced 44 species representing 6 families and performed a phylogenetic analysis. From this analysis, they were able to resolve the phylogeny of many genera and document incomplete lineage sorting among major clades. Interestingly, they found evidence for large population reductions among many taxa starting at approximately 100,000 years ago, coinciding with the migration of humans out of Africa. Examining the bony appendages on the head—the so-called headgear—Wang et al. describe specific evolutionary changes in the ruminants and identify selection on cancer-related genes that may function in antler development in deer. Finally, Lin et al. take a close look at the reindeer genome and identify the genetic basis of adaptations that allow reindeer to survive in the harsh conditions of the Arctic. Science , this issue p. eaav6202 , p. eaav6335 , p. eaav6312 ; see also p. 1130 Ruminant phylogeny is resolved with representative genomes. The ruminants are one of the most successful mammalian lineages, exhibiting morphological and habitat diversity and containing several key livestock species. To better understand their evolution, we generated and analyzed de novo assembled genomes of 44 ruminant species, representing all six Ruminantia families. We used these genomes to create a time-calibrated phylogeny to resolve topological controversies, overcoming the challenges of incomplete lineage sorting. Population dynamic analyses show that population declines commenced between 100,000 and 50,000 years ago, which is concomitant with expansion in human populations. We also reveal genes and regulatory elements that possibly contribute to the evolution of the digestive system, cranial appendages, immune system, metabolism, body size, cursorial locomotion, and dentition of the ruminants.

Cancer cell-derived exosomes often serve as important signaling mediators between cancer cells and the local microenvironment. [...]this study aimed to elucidate the reciprocal interplay between cancer cells and Schwann cells via exosomes during cancer PNI and to identify potential therapeutic target for PNI. Transcriptome sequencing and gene set enrichment analysis (GSEA) were performed to unravel the mechanism by which exosomal miRNA reprograms Schwann cells to promote SACC invasion. Based on the volume of the tumor, no statistically significant difference was found between the negative control group and the experimental group (miR-130b-3p agomir pre-treatment) [Supplementary Figure 7D, http://links.lww.com/CM9/C114]. To prove that whether PCSK9 is the key functional gene that leads to the increased invasion ability of SACC cells, a PCSK9 inhibitor was used to inhibit its expression.

PurposeRobotic surgical system has been gradually applied in thyroid neoplasms as a novel treatment for years, with presenting some superiorities as well as limitations. To compare the effectiveness and safety of robotic surgery with open surgery for the patients with thyroid neoplasms, this review was conductedMethodsWe performed electronic search in CENTRAL, MEDLINE, EMBASE, CNKI, CBM, Opengray, and Sciencepaper Online databases and manual search in specific online databases and according to the reference list of relevant papers to get all the studies that compared the effectiveness and safety of robotic surgery with that of open surgery for patients with thyroid neoplasms. Last update was conducted in March 2020. Randomized-controlled trials, case–control studies, cohort studies, and cross-sectional surveys were all included.ResultsIn this review, 59 studies were included: two RCTs, 15 NRSs, 40 cohort studies, and two cross-sectional studies. Robotic surgery was found to be associated with longer operative duration, less retrieved lymph nodes, higher postoperative thyroglobulin before radioactive iodine ablation, similar complication incidence but less blood loss, better functional recovery, and higher cosmetic satisfaction compared to open surgery.ConclusionsRobotic surgery is a safe and feasible approach with remarkable superiority in reducing intraoperative damage and improving patients’ quality of life compared to open surgery for thyroid neoplasms. Meanwhile, this procedure is also associated with long operative duration, insufficient removal of neck lymph nodes, which need to be given careful consideration.