Explore the vast range of titles available.

Paclitaxel (Taxol), a highly modified diterpene agent mainly obtained from Taxus species, is the most widely used anticancer drug. Abscisic acid (ABA) is a well-known stress hormone that plays important roles in the secondary metabolism of plants, and it can also induce the accumulation of taxol in Taxus cell suspension cultures. However, the mechanism behind the regulation of taxol biosynthesis by ABA remains largely unknown. In previous research, a R2R3 MYB transcription factor (TF) TcMYB29a was observed to show a significant correlation with taxol biosynthesis, indicative of its potential role in the taxol biosynthesis. In this study, the TcMYB29a encoded by its gene was further characterized. An expression pattern analysis revealed that TcMYB29a was highly expressed in the needles and roots. Overexpression of TcMYB29a in Taxus chinensis cell suspension cultures led to an increased accumulation of taxol, and upregulated expression of taxol-biosynthesis-related genes, including the taxadiene synthase (TS) gene, the taxane 5α-hydroxylase (T5OH) gene, and the 3′-N-debenzoyl-2′-deoxytaxol-N-benzoyltransferase (DBTNBT) gene as compared to the controls. Chromatin immunoprecipitation (ChIP) assays, yeast one-hybrid (Y1H) assays, electrophoretic mobility shift assays (EMSAs), and dual-luciferase reporter assays verified that TcMYB29a could bind and activate the promoter of TcT5OH. Promoter sequence analysis of TcMYB29a revealed that its promoter containing an AERB site from -313 to -319 was a crucial ABA-responsive element. Subsequently, the ABA treatment assay showed that TcMYB29a was strongly upregulated at 6 h after ABA pretreatment. Furthermore, TcMYB29a was strongly suppressed at 3 h after the methyl jasmonate (MeJA) treatment and was depressed to the platform at 12 h. Taken together, these results reveal that TcMYB29a is an activator that improves the accumulation of taxol in Taxus chinensis cells through an ABA-medicated signaling pathway which is different from JA-medicated signaling pathways for the accumulation of taxol. These findings provide new insights into the potential regulatory roles of MYBs on the expression of taxol biosynthetic genes in Taxus .

Dendrobium is one of the largest genera in Orchidaceae, comprising about 800–1500 species mainly distributed in tropical Asia, Australasia, and Australia. There are 74 species and two varieties of this genus in China. Because of their ornamental and commercial value, Dendrobium orchids have been studied at low taxonomic levels. However, structural changes and effective mutational hotspots of Dendrobium plastomes have rarely been documented. Here, 30 Dendrobium plastomes were compared, comprising 25 newly sequenced in this study and five previously published. Except for their differences in NDH genes, these plastomes shared identical gene content and order. Comparative analyses revealed that the variation in size of Dendroubium plastomes was associated with dramatically changed length of InDels. Furthermore, ten loci were identified as the top-ten mutational hotspots, whose sequence variability was almost unchanged with more than 10 plastomes sampled, suggesting that they may be powerful markers for Dendrobium species. In addition, primer pairs of 47 polymorphic microsatellites were developed. After assessing the mean BS values of all combinations derived from the top-ten hotspots, we recommend that the combination of five hotspots— trnT - trnL , rpl32 - trnL , clpP - psbB , trnL intron , and rps16 - trnQ —should be used in the phylogenetic and identification studies of Dendrobium .

Background WRKY transcription factors are plant-specific and play essential roles in growth, development, and stress responses, including reactions to salt, drought, and cold. Despite their significance, the WRKY genes in the wild sweet potato ancestor, Ipomoea pes-caprae , remain unexplored. Results In this study, 65 WRKY genes were identified in the I. pes-caprae transcriptomic data. A phylogenetic tree incorporating Arabidopsis thaliana and Ipomoea batatas revealed seven major groups, each characterized by conserved gene structural features. Transcriptome data of I. pes-caprae under salt stress conditions identified 17 highly expressed WRKY genes, whose promoter regions contain cis-acting elements associated with plant growth, stress responses, and hormone signaling. Further analysis revealed that the 17 IpWRKY genes exhibited differential expression patterns under various abiotic stresses, suggesting their potential roles in specific stress responses. The gene IpWRKY16 was significantly up-expressed under salt stress, drought, salicylic acid (SA), and abscisic acid (ABA) treatments. Subcellular localization analysis confirmed that IpWRKY16 is located in the nucleus. Under salt stress, IpWRKY16 overexpressing roots showed high activity in superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and low content in malondialdehyde (MDA). Using non-invasive micro-test technology (NMT), a significant efflux of Na + was observed in the elongation zones of sweet potato adventitious roots that overexpressed IpWRKY16 . Quantitative reverse transcription PCR (qRT-PCR) revealed that several ion transporter genes were responsive to IpWRKY16 expression, with IbSOS3 , IbAHA4-1 , and IbAHA4-2 showing the highest expression levels. We hypothesize that IpWRKY16 responds to salt stress by forming a complex regulatory network involving these key genes. Conclusions This study provides a foundational understanding of WRKY transcription factors in I. pes-caprae , offering insights into their potential role in enhancing salt-tolerance in sweet potato. Our findings contribute valuable genetic knowledge that could aid in the molecular breeding of stress-resilient sweet potato varieties.

Regional green development requires balancing anthropogenic carbon emissions (CEs) with vegetation carbon sequestration (VCS). Using the CASA model and plant photosynthesis equation, we estimated VCS from net primary productivity (NPP) and proposed a Carbon Balance Pressure Index (CBPI) to quantify the imbalance between carbon sources and sinks. Spatial analysis and a geographic detector were applied to examine influencing factors of CBPI across Sichuan–Chongqing from 2001 to 2017. Results show that CE increased by 178%, while VCS rose by 27%. Regional CBPI thus enhanced from 0.35 to 0.76, aligning with CE trends. The CBPI presented a clear west-low (0–0.2, except Panzhihua), center-high (peak 3.1 in Chengdu), moderate-east (0.1–0.8) pattern. Geographic detector reveals that economic development and urbanization accounted for 80% of CBPI heterogeneity, followed by transportation (65%). Energy-intensive industries dominated developed areas, while construction-land expansion prevailed in developing regions. This study underscores region-specific emission-sink pathways and provides an empirical basis for differentiated low-carbon strategies in similar rapidly urbanizing regions in China.

With the increasing demand for medicinal plants and the increasing shortage of resources, improving the quality and yield of medicinal plants and making more effective use of medicinal plants has become an urgent problem to be solved. During the growth of medicinal plants, various adversities can lead to nutrient loss and yield decline. Using traditional chemical pesticides to control the stress resistance of plants will cause serious pollution to the environment and even endanger human health. Therefore, it is necessary to find suitable pesticide substitutes from natural ingredients. As an important part of the microecology of medicinal plants, endophytes can promote the growth of medicinal plants, improve the stress tolerance of hosts, and promote the accumulation of active components of hosts. Endophytes have a more positive and direct impact on the host and can metabolize rich medicinal ingredients, so researchers pay attention to them. This paper reviews the research in the past five years, aiming to provide ideas for improving the quality of medicinal plants, developing more microbial resources, exploring more medicinal natural products, and providing help for the development of research on medicinal plants and endophytes.

Sweet potato (Ipomoea batatas (L.) Lam.), as an important crop, is rich in polyphenols, vitamins, minerals, and other nutrients in its roots and leaves and is gradually gaining popularity. The use of endophytic bacteria to improve the quality of sweet potato can protect the environment and effectively promote the sustainable development of the sweet potato industry. In this study, 12 strains of endophytic bacteria were isolated from sweet potato. Through nitrogen fixation, phosphorus solubilization, indoleacetic acid production, siderophore production, ACC deaminase production, and carboxymethyl cellulose production, three strains with multiple biological activities were screened out. Among them, MEPW12 had the most plant growth-promoting functions. In addition, MEPW12 promoted host chlorophyll accumulation and inhibited pathogen growth and colonization in sweet potato roots and can utilize various carbon sources and salts for growth. It can also grow in extreme environments of high salt and weak acid. MEPW12 was identified as Bacillus amyloliquefaciens with a genome size of 3,928,046 bp and a GC content of 46.59%. After the annotation of multiple databases, it was found that MEPW12 had multiple enzymatic activities and metabolic potential. Comparative genomics and pan-genomics analyses revealed that other Bacillus sp. strains of MEPW12 have similar functions. However, due to adaptation to different growth environments, there are still genomic differences and changes. Inoculation with MEPW12 induced the high expression of IbGH3.10, IbERF1, and other genes, thereby promoting the growth of sweet potatoes. Bacillus amyloliquefaciens strain MEPW12 is a sweet potato endophyte with multiple growth-promoting functions, which can promote the growth of sweet potato seedlings. This study provides new microbial resources for developing microbial agents and improving the quality of sweet potatoes.

Apostasioideae, consists of only two genera, and , which are mainly distributed in Southeast Asia and northern Australia. The floral structure, taxonomy, biogeography, and genome variation of Apostasioideae have been intensively studied. However, detailed analyses of plastome composition and structure and comparisons with those of other orchid subfamilies have not yet been conducted. Here, the complete plastome sequences of and were sequenced and compared with 43 previously published photosynthetic orchid plastomes to characterize the plastome structure and evolution in the orchids. Unlike many orchid plastomes (e.g., and ), the plastomes of Apostasioideae contain a full set of 11 functional NADH dehydrogenase ( ) genes. The distribution of repeat sequences and simple sequence repeat elements enhanced the view that the mutation rate of non-coding regions was higher than that of coding regions. The 10 loci- intron, , , , , , , , , and -that had the highest degrees of sequence variability were identified as mutational hotspots for the plastome. Furthermore, our results revealed that plastid genes exhibited a variable evolution rate within and among different orchid genus. Considering the diversified evolution of both coding and non-coding regions, we suggested that the plastome-wide evolution of orchid species was disproportional. Additionally, the sequences flanking the inverted repeat/small single copy (IR/SSC) junctions of photosynthetic orchid plastomes were categorized into three types according to the presence/absence of genes. Different evolutionary dynamics for each of the three IR/SSC types of photosynthetic orchid plastomes were also proposed.

Taxus spp. are ancient tree species that have survived from the Quaternary glacier period, and their metabolites, such as taxol, have been used as anticancer drugs globally. Plant–endophytic microbial interaction plays a crucial role in exerting a profound impact on host growth and secondary metabolite synthesis. In this study, high-throughput sequencing was employed to explore endophytic microbial diversity in the roots, stems, and leaves of the Taxus yunnanensis (T. yunnanensis). The analysis revealed some dominant genera of endophytic bacteria, such as Pseudomonas, Neorhizobium, Acidovorax, and Flavobacterium, with Cladosporium, Phyllosticta, Fusarium, and Codinaeopsis as prominent endophytic fungi genera. We isolated 108 endophytic bacteria and 27 endophytic fungi from roots, stems, and leaves. In vitro assays were utilized to screen for endophytic bacteria with growth-promoting capabilities, including IAA production, cellulase, siderophore production, protease and ACC deaminase activity, inorganic phosphate solubilization, and nitrogen fixation. Three promising strains, Kocuria sp. TRI2-1, Micromonospora sp. TSI4-1, and Sphingomonas sp. MG-2, were selected based on their superior growth-promotion characteristics. These strains exhibited preferable plant growth promotion when applied to Arabidopsis thaliana growth. Fermentation broths of these three strains were also found to significantly promote the accumulation of taxanes in T. yunnanensis stem cells, among which strain TSI4-1 demonstrated outstanding increase potentials, with an effective induction of taxol, baccatin III, and 10-DAB contents. After six days of treatment, the contents of these metabolites were 3.28 times, 2.23 times, and 2.17 times the initial amounts, reaching 8720, 331, and 371 ng/g of dry weight of stem cells, respectively. These findings present new insight into the industrialization of taxol production through Taxus stem cell fermentation, thereby promoting the conservation of wild Taxus resources by maximizing their potential economic benefits.

Paclitaxel is an important natural anticancer drug. Its biosynthesis is very complex and 18 enzymes likely involved have been characterized. However, the regulatory mechanism of these enzyme genes still remains to be elucidated. Here we identified a novel transcription factor in the MYC family of Taxus chinensis TcJAMYC5 function in paclitaxel biosynthesis. TcJAMYC5 was highly expressed in the roots and regulated by MeJA. Transient overexpression of TcJAMYC5 in T. chinensis cambial meristematic cells resulted in a significant increase in paclitaxel and bacctin III content and upregulated expression of nearly all of paclitaxel biosynthesis related genes except T13αOH . Suppression of TcJAMYC5 expression in cambial meristematic cells resulted in a significant decrease in paclitaxel content. TcJAMYC5 could bind to promoters of paclitaxel biosynthesis pathway enzyme genes TASY, DBTNBT and T5αH for directly activating their expression. Taken together, we conclude that TcJAMYC5 is an activator that improves the accumulation of paclitaxel in T. chinensis through a MeJA-medicated signaling pathway. Key message We have isolated a MYC transcription factor, designated as TcJAMYC5, from Taxus chinensis and discovered its role as an activator that positively regulates the accumulation of paclitaxel in T. chinensis by binding the promoters of TASY, DBTNBT and T5αH, three key genes for paclitaxel biosynthesis.

Stem rot disease frequently occurs during the artificial cultivation of Dendrobium officinale Kimura et Migo, which has adverse effects on its yield and quality. Endophytic bacteria present in plants represented potential sources of biocontrol agents. This study isolated 43 distinct microbial strains from wild Dendrobium moniliforme (L.) Sw., among which strain MEPP0209 exhibited significant inhibition of Lasiodiplodia theobromae hyphal growth. Based on the 16S rDNA sequences, the strain was identified as Streptomyces sp. MEPP0209. The cell-free supernatant (CFS) of MEPP0209 significantly inhibited L. theobromae growth, and effectively reduced the disease index of stem rot in D. officinale tissue-cultured seedlings. Transcriptome analysis showed that differentially expressed genes (DEGs) related to cell division and cell cycle were significantly downregulated in L. theobromae hyphae after MEPP0209 CFS treatment, such as MCM2/3/4/5/6/7, NDT80, POLA1, and MBP1, while DEGs related to energy metabolism and oxidative stress were significantly upregulated. Metabolomics analysis and in vitro antagonistic assays indicated that the candidate antagonistic substances, 5,6-dimethylbenzimidazole and pyrrole-2-carboxylic acid, can effectively inhibit the growth of L. theobromae. And qRT-PCR results obtained from the pathogen treated with these two metabolites further indicated the downregulation of genes implicated in cell division and cell cycle. Overall, our findings suggested that the inhibition of fungal growth by MEPP0209 may be associated with the downregulation of genes related to cell division and proliferation in L. theobromae. The metabolites produced by MEPP0209, including 5,6-dimethylbenzimidazole and pyrrole-2-carboxylic acid, likely contributed to this inhibitory effect. This study provides a theoretical basis for future investigations into the role of MEPP0209 in biological control of D. officinale stem rot.