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The skate fauna in the Southwest Atlantic Ocean (SWA; 34–55° S) is represented by ~32 species, many of which share external features that have led to misidentifications and deficient fishery statistics. The use of DNA barcoding to discriminate SWA skate species was explored after 20 years of surveys. COI sequences were subjected to distance-based neighbor-joining (NJ), maximum likelihood (ML), barcode index number (BIN), automatic barcode gap discovery (ABGD), and nucleotide diagnostic character (NDC) analyses. For widely distributed species, a haplotype network was built. Overall, 187 specimens and 31 egg cases from 26 skate species were barcoded. NJ and ML analyses showed that nearly all species exhibited unique barcodes or clusters of closely related haplotypes, except for Psammobatis normani/P. rudis and Dipturus trachyderma/D. argentinensis. The first pair was discriminated by NCD. BIN analysis recovered 17 groups, whereas ABGD recovered 23, better reflecting taxonomic diversity. In summary, 24 species were resolved by COI. Phylogeographic signals were observed for Amblyraja doellojuradoi and Zearaja brevicaudata. Compiling our results with data from BOLD, almost all the species occurring in the area possess barcodes, contributing to completing and curating the BOLD reference library, which constitutes an important tool for resolving taxonomic issues, tracing fishery products, and performing eDNA biomonitoring.

DNA barcoding has been advanced as a promising tool to aid species identification and discovery through the use of short, standardized gene targets. Despite extensive taxonomic studies, for a variety of reasons the identification of fishes can be problematic, even for experts. DNA barcoding is proving to be a useful tool in this context. However, its broad application is impeded by the need to construct a comprehensive reference sequence library for all fish species. Here, we make a regional contribution to this grand challenge by calibrating the species discrimination efficiency of barcoding among 125 Argentine fish species, representing nearly one third of the known fauna, and examine the utility of these data to address several key taxonomic uncertainties pertaining to species in this region. Specimens were collected and morphologically identified during crusies conducted between 2005 and 2008. The standard BARCODE fragment of COI was amplified and bi-directionally sequenced from 577 specimens (mean of 5 specimens/species), and all specimens and sequence data were archived and interrogated using analytical tools available on the Barcode of Life Data System (BOLD; www.barcodinglife.org). Nearly all species exhibited discrete clusters of closely related haplogroups which permitted the discrimination of 95% of the species (i.e. 119/125) examined while cases of shared haplotypes were detected among just three species-pairs. Notably, barcoding aided the identification of a new species of skate, Dipturus argentinensis, permitted the recognition of Genypterus brasiliensis as a valid species and questions the generic assignment of Paralichthys isosceles. This study constitutes a significant contribution to the global barcode reference sequence library for fishes and demonstrates the utility of barcoding for regional species identification. As an independent assessment of alpha taxonomy, barcodes provide robust support for most morphologically based taxon concepts and also highlight key areas of taxonomic uncertainty worthy of reappraisal.

With an estimate of around 9,000 species, the Neotropical region hosts the greatest diversity of freshwater fishes of the world. Genetic surveys have the potential to unravel isolated and unique lineages and may result in the identification of undescribed species, accelerating the cataloguing of extant biodiversity. In this paper, molecular diversity within the valuable and widespread Neotropical genus Hoplias was assessed by means of DNA Barcoding. The geographic coverage spanned 40 degrees of latitude from French Guiana to Argentina. Our analyses revealed 22 mitochondrial lineages fully supported by means of Barcode Index Number, Automatic Barcode Gap Discovery and phylogenetic analyses. This mtDNA survey revealed the existence of 15 fully supported mitochondrial lineages within the once considered to be the continentally distributed H. malabaricus. Only four of them are currently described as valid species however, leaving 11 mitochondrial lineages currently \"masked\" within this species complex. Mean genetic divergence was 13.1%. Barcoding gap analysis discriminated 20 out of the 22 lineages tested. Phylogenetic analyses showed that all taxonomically recognized species form monophyletic groups. Hoplias malabaricus sensu stricto clustered within a large clade, excluding the representatives of the La Plata River Basin. In the H. lacerdae group, all species but H. curupira showed a cohesive match between taxonomic and molecular identification. Two different genetic lineages were recovered for H. aimara. Given the unexpected hidden mitochondrial diversity within H. malabaricus, the COI sequence composition of specimens from Suriname (the type locality), identified as H. malabaricus sensu stricto, is of major importance.

The Atlantic Rainforest is among the main biodiversity hotspots in the world, the Yabotí Biosphere Reserve (YBR) being one of the most important remaining areas. Agriculture practices could lead to intensive usage of pesticides resulting in a risk to the environment and human health. Water, suspended particulate matter (SPM), sediment, and fish ( Andromakhe paris and Andromakhe saguazu ) samples were collected from four streams with different degrees of protection of the YBR in two periods in order to assess the distribution of 18 organochlorine pesticides. Legacy and current-use pesticides were found in the different environmental matrices of the stream headwaters in non-anthropized areas within the buffer zone that drains the intangible area. A similar occurrence pattern of pesticides was found in all matrices. Levels of DDTs (<3.63 ng/L) and endosulfans (<21.8 ng/L) in surface water were above international guidelines for the protection of aquatic life in several streams for both sampling periods. HCHs, DDTs, endosulfans, and chlorpyrifos were detected in SPM and sediments from three streams, while γ-HCH (<60.3 ng/g lipid weight), chlorpyrifos (<698 ng/g lw), p,p´ -DDD (<367 ng/g lw), and α-endosulfans (<209 ng/g lw) were detected in fish muscle in several streams. Chlorpyrifos and endosulfans were associated with current use, while DDx/DDT ratios suggested an old use. The concentration of pesticides found would not represent a risk to human health; however, it highlights the need to establish better regulation and action guidelines to reduce the anthropogenic effect on natural reserves.

Currently, the genus Zenopsis , also known as silver John Dory, comprises at least five valid species with a wide range of distribution. However, recent studies have proposed the existence of a new Zenopsis species inhabiting the Indian Ocean, and a preliminary search in the Barcode of Life Database reveals the presence of different barcode index numbers (BIN) for the nominal species Zenopsis conchifer . In the Southwest Atlantic Ocean (SWA), Z. conchifer is the only species reported so far. Therefore, the aim of this work was to evaluate, at the molecular level, the potential taxonomic diversity within the genus Zenopsis and to assess if the species occurring in the SWA corresponds with Z. conchifer . Using data available in worldwide genetic databases, a maximum likelihood tree, a BIN, and an automatic barcode gap discovery analysis were carried out. Additionally, specimens sampled from the SWA were morphologically compared with specimens from different parts of its distribution using available data. The specific identity at the molecular level of specimens occurring in the SWA was confirmed as Z. conchifer . The results of the molecular analysis highlight the existence of hidden specific diversity within the genus.

We conducted a revision of the Neotropical genus Acrobrycon . A previous study synonymized the species, A. ipanquianus , distributed from the western portion of the Amazon River to the north-western region of the La Plata River Basin, and A. tarijae , with type locality in the Lipeo River in Bolivia. We revisited this result by collecting new morphometric, meristic, and genetic data ( COI mitochondrial gene) for 24 individuals distributed along La Plata River Basin in Argentina, and discussed our results in the context of multiple biogeographic processes of isolation in that basin. Our results revealed a more complex history of diversification and geographic distribution across Acrobrycon species than previously suspected, probably associated with multiple biogeographic processes of isolation in La Plata River Basin. We present new evidence that led us to reconsider the validity of A. tarijae , which is distinguishable from A. ipanquianus by the number of vertebrae (37–39 vs. 41–42) and pleural ribs (12–13 vs. 14). These results were also supported by our molecular analyses that revealed a genetic divergence >4% between A. ipanquianus and A. tarijae . We also identified two main genetic clusters within A. tarijae : the first cluster consisted of specimens from the Bermejo, Pilcomayo, Itiyuro and Juramento river basins (northern Argentina); and the second cluster included specimens from the southernmost basins, such as the Salí River in Tucumán, Cuarto River in the province of Cordoba and the Quinto River in the province of San Luis. Our results suggest that the genetic structure observed in A. tarijae is the result of the type of drainage (endorheic vs. exorheic) and geographical distance.

Optimising conservation efforts requires an accurate record of the extant species as well as their geographic distributions. Nevertheless, most current conservation strategies start from an incomplete biodiversity inventory. Argentina has an extraordinary diversity of species, however, until now an updated inventory of its fauna has not been carried out. In this context, the main objective of this work is to present the results of the first national inventory of vertebrate species. Experts from each major vertebrate taxonomic group assembled and compiled its respective inventory. The information gathered included taxonomic rank, conservation status, endemism and geographic distribution. Species richness and representativeness were calculated for each taxonomic group, distinguishing between native, endemic and exotic, for each Argentinian province. Our results show Argentina harbours 3,303 species: 574 marine fish, 561 freshwater fish, 177 amphibians, 450 reptiles, 1,113 birds, and 428 mammals. Native species constitute 98.1% of the total taxa. The results achieved were spatially represented showing a pattern of higher richness from north to south and from east to west. Species considered as threatened account for 17.8% and 15.2% are endemic. There are five Extinct species. These results provide key information on developing strategies and public policies at the national and provincial levels and constitute a tool for the management and conservation of biodiversity.

The Burdwood Bank (BB) is a subantarctic area, where two of the three Marine Protected Areas (MPA) of the Argentinean Exclusive Economic Zone are located: Namuncurá I, and Namuncurá II. The area is characterized by a high biodiversity of benthic invertebrates and teleost fishes; however, the available information on oviparous chondrichthyans is scarce. The aim of this study is to explore the potential reproductive use that oviparous chondrichthyans could make of the area based on the presence of egg-laying grounds. Additionally, we aim to provide an updated checklist of the species that inhabit the BB. Samples of specimens and egg capsules collected in four research cruises carried out between 2016 and 2018 were analyzed. Six skate species were found in both MPAs: Amblyraja doellojuradoi, Bathyraja albomaculata, B. brachyurops, B. macloviana,B. scaphiops, and Psammobatis rudis; whereas B. cousseauae, and B. magellanica were found exclusively in Namuncurá I, and B. multispinis in Namuncurá II. Here we report, for the first time, the presence of egg-laying grounds for five chondrichthyan species in the BB area: A. doellojuradoi, B. brachyurops, B. macloviana, B. scaphiops, and P. rudis. The results obtained highlighted the importance of the region for the conservation of oviparous chondrichthyans found in the southern Patagonian shelf.

Aim We assessed the validity of the division of the Magellanic Province into the four provinces as proposed by Briggs & Bowen (J Biogeogr 39 12–30, 2012): Southern Chile, Tierra del Fuego, Southern Argentina and Falkland (Malvinas) Islands. We aimed to (a) present an updated list of the fishes from the region known as ‘Magellanic Province’, (b) analyse the specific richness of fishes in the Atlantic and Pacific sectors and their degree of endemism and (c) evaluate statistically the validity of the three Provinces proposed for the Atlantic sector. Location Southern tip of the American continent at latitudes higher than 40° S in the Atlantic as well as in the Pacific Oceans. Taxon 348 South American marine fish species. Methods The list of fishes was prepared by consulting more than 140 sources, many related to observations resulting from research cruises, although two ichthyological collections and two ichthyological websites were also used. The South American species with distributions extending outside of the area corresponding to the Magellanic Province, and all cosmopolitan species, were excluded of endemism analyses. For analysing fish distributions in the Atlantic sector, the data employed are from eight research cruises carried out from 1978 to 2006 from 37° to 55° south. A total of 523 fishing trawls have been analysed, grouped into cell of 1° × 1° cells. The species composition of each cell was evaluated by multivariate analysis (non‐metric multidimensional scaling, cluster and similarity analyses). Results The percentage of endemism in each sector (Atlantic 2.87% and Pacific 2.87%) is smaller than the endemism common to both sectors (9.2%). The total of endemic species in the Province is 14.94%, which is bigger than the 10% indicated as the lower limit for defining a biogeographic province suggested by Briggs (Marine Zoogeography, 1974). In addition, multivariate analyses do not show differences in the species composition, neither between Falkland (Malvinas) Islands and ‘Southern Argentina’ nor between the latter and Tierra del Fuego. Main conclusions The ichthyological data indicate only one biogeographic province in the region not four as previously posited.

Environmental pollution affects the quality of the natural environment where major and trace elements have been commonly found to accumulate in biotic and abiotic matrices. The purposes of this research were (1) to assess the accumulation and distribution of 24 major and trace elements in water, sediments, and muscle and gills of ten native fishes from two natural areas with different degree of protection in the Atlantic Rainforest, (2) to discuss potential origin of the elements related to the land use, and (3) to assess the human health risk for water and muscle fish consumption in general and fisher populations. Major and trace elements were determined by inductively coupled plasma mass spectrometry. Concentrations of Ag, Cu, and Se in water and Cr, Cu, Hg, Mn, Ni, and Zn in sediment were higher than the international guidelines for the aquatic biota protection. Muscle Cr, Cu, Ni, Pb, Hg, and Zn from several species (both studied areas) were above guidelines for human consumption. The bioaccumulation factor (< 6936) was higher in gills than in muscle, and indicated that Andromakhe saguazu , Andromakhe paris , Gymnogeophagus lipokarenos , and Steindachnerina biornata were macroconcentrators of Zn, and Australoheros ykeregua , G. lipokarenos , and Hemiancistrus fuliginosus were macroconcentrators of Se and Sr. The hazard index and target hazard quotient indicated that there is no risk from chronic consumption of water or fish. The results show the need to reduce the entry of pollutants into streams, paying special attention to reducing runoff in deforested areas.