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result(s) for
"MacLaren, Ian"
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Atomap: a new software tool for the automated analysis of atomic resolution images using two-dimensional Gaussian fitting
by
Vullum, Per Erik
,
Nord, Magnus
,
MacLaren, Ian
in
Atomic properties
,
Atomic structure
,
Biological Microscopy
2017
Scanning transmission electron microscopy (STEM) data with atomic resolution can contain a large amount of information about the structure of a crystalline material. Often, this information is hard to extract, due to the large number of atomic columns and large differences in intensity from sublattices consisting of different elements. In this work, we present a free and open source software tool for analysing both the position and shapes of atomic columns in STEM-images, using 2-D elliptical Gaussian distributions. The software is tested on variants of the perovskite oxide structure. By first fitting the most intense atomic columns and then subtracting them, information on all the projected sublattices can be obtained. From this, we can extract changes in the lattice parameters and shape of A-cation columns from annular dark field images of perovskite oxide heterostructures. Using annular bright field images, shifts in oxygen column positions are also quantified in the same heterostructure. The precision of determining the position of atomic columns is compared between STEM data acquired using standard acquisition, and STEM-images obtained as an image stack averaged after using non-rigid registration.
Journal Article
Fast Pixelated Detectors in Scanning Transmission Electron Microscopy. Part I: Data Acquisition, Live Processing, and Storage
by
Nord, Magnus
,
Webster, Robert W. H.
,
McVitie, Stephen
in
Algorithms
,
Computer programs
,
Data acquisition
2020
The use of fast pixelated detectors and direct electron detection technology is revolutionizing many aspects of scanning transmission electron microscopy (STEM). The widespread adoption of these new technologies is impeded by the technical challenges associated with them. These include issues related to hardware control, and the acquisition, real-time processing and visualization, and storage of data from such detectors. We discuss these problems and present software solutions for them, with a view to making the benefits of new detectors in the context of STEM more accessible. Throughout, we provide examples of the application of the technologies presented, using data from a Medipix3 direct electron detector. Most of our software are available under an open source licence, permitting transparency of the implemented algorithms, and allowing the community to freely use and further improve upon them.
Journal Article
Fast Pixelated Detectors in Scanning Transmission Electron Microscopy. Part II: Post-Acquisition Data Processing, Visualization, and Structural Characterization
by
Ross, Andrew
,
Macgregor, Thomas A.
,
Nord, Magnus
in
Algorithms
,
Data analysis
,
Data processing
2020
Fast pixelated detectors incorporating direct electron detection (DED) technology are increasingly being regarded as universal detectors for scanning transmission electron microscopy (STEM), capable of imaging under multiple modes of operation. However, several issues remain around the post-acquisition processing and visualization of the often very large multidimensional STEM datasets produced by them. We discuss these issues and present open source software libraries to enable efficient processing and visualization of such datasets. Throughout, we provide examples of the analysis methodologies presented, utilizing data from a 256 × 256 pixel Medipix3 hybrid DED detector, with a particular focus on the STEM characterization of the structural properties of materials. These include the techniques of virtual detector imaging; higher-order Laue zone analysis; nanobeam electron diffraction; and scanning precession electron diffraction. In the latter, we demonstrate a nanoscale lattice parameter mapping with a fractional precision ≤6 × 10−4 (0.06%).
Journal Article
Low dimensional nanostructures of fast ion conducting lithium nitride
2020
As the only stable binary compound formed between an alkali metal and nitrogen, lithium nitride possesses remarkable properties and is a model material for energy applications involving the transport of lithium ions. Following a materials design principle drawn from broad structural analogies to hexagonal graphene and boron nitride, we demonstrate that such low dimensional structures can also be formed from an s-block element and nitrogen. Both one- and two-dimensional nanostructures of lithium nitride, Li
3
N, can be grown despite the absence of an equivalent van der Waals gap. Lithium-ion diffusion is enhanced compared to the bulk compound, yielding materials with exceptional ionic mobility. Li
3
N demonstrates the conceptual assembly of ionic inorganic nanostructures from monolayers without the requirement of a van der Waals gap. Computational studies reveal an electronic structure mediated by the number of Li-N layers, with a transition from a bulk narrow-bandgap semiconductor to a metal at the nanoscale.
Lithium nitride is the only stable binary alkali metal-nitrogen compound and shows promise for energy applications involving the transport of lithium ions. Here, the authors demonstrate that lithium nitride nanostructures can be grown as fibres and sheets despite the absence of a van der Waals gap.
Journal Article
Nano-scale characterisation of tri-modal microstructures in TIMETAL ® 575
by
Berment-Parr, Iain
,
Frutos-Myro, Enrique
,
MacLaren, Ian
in
Beta phase
,
Electron diffraction
,
Electron energy distribution
2020
TIMETAL ® 575, developed by Titanium Metals Corporation (TIMET), is a high strength forgeable α+β titanium alloy with comparable density, beta transus temperature and processing characteristics to Ti-6Al-4V but with enhanced static and fatigue strength primarily aimed at aero-engine disc or blade applications. Recent research on this alloy has focussed on microstructure evolution as a means to optimise mechanical behaviour and it has been concluded that a solution heat treatment followed by an ageing step yields a resulting “tri-modal” microstructure, consisting of equiaxed primary α and bi-lamellar transformation product containing nano-scale “tertiary alpha” laths, which appear to provide an excellent balance of strength and ductility. The key objective of the work presented here is to characterise this complex nanoscale microstructure in detail at various stages of alloy processing. For that purpose various advanced and recently developed transmission electron microscopy (TEM) techniques have been used. These include alpha and beta phase mapping Precession Electron Diffraction (PED), overall microstructure imaging with conventional BF and DF TEM, distinction of fine phase detail with high angle annular dark field (HAADF) scanning TEM (STEM), and correlation of the nanostructure to the elemental distribution using scanned Electron Energy Loss Spectroscopy (EELS).
Journal Article
Electron Microscopy and Analysis Group Conference (EMAG2015)
2015
2015 marked a new venture for the EMAG group of the Institute of Physics in that the conference was held in conjunction with the MMC2015 conference at the wonderful Manchester Central conference centre. As anyone who was there would be able to confirm, this went exceptionally well and was a really vibrant and top quality conference. The oral sessions were filled with good talks, the poster sessions were very lively, and there was a good balance between oral sessions with a specifically \"EMAG\" identity, and the integration into a larger conference with the ability to switch between up to six parallel sessions covering physical sciences, techniques, and life sciences. The large conference also attracted a wide range of exhibitors, and this is essential for the ongoing success of all of our work, in a field that is very dependent on continued technical innovation and on collaborations between academic researchers and commercial developers of microscopes, holders, detectors, spectrometers, sample preparation equipment, and software, among other things. As has long been the case at EMAG, all oral and poster presenters were invited to submit papers for consideration for the proceedings. As ever, these papers were independently reviewed by other conference attendees, with the aim of continuing the long tradition of the EMAG proceedings being a top quality, peer-reviewed publication, worthy of reference in future years. Whilst I recognise that not all presenters were able to submit papers to the proceedings (for instance due to the need not to prejudice publication in some other journals, or due to avoiding duplicate publication of data), we are gratified that our presenters submitted as many papers as they did. The 41 papers included provide an interesting snapshot of many of the areas covered in the conference presentations, including functional materials, coatings, 3D microscopy, FIB and SEM, nanomaterials, magnetic and structural materials, advances in EM techniques, and EM of biological systems and biomaterials. The arrangement of the papers in the proceedings is not the same as the ordering of the conference sessions, but has been grouped by similar topics. I hope you enjoy reading these papers and that these serve as an interesting summary of what was an excellent conference. Best wishes Dr Ian MacLaren SUPA School of Physics and Astronomy University of Glasgow Glasgow G12 8QQ
Journal Article
Liftout of High-Quality Thin Sections of a Perovskite Oxide Thin Film Using a Xenon Plasma Focused Ion Beam Microscope
2019
It is shown that a xenon plasma focused ion beam (FIB) microscope is an excellent tool for high-quality preparation of functional oxide thin films for atomic resolution electron microscopy. Samples may be prepared rapidly, at least as fast as those prepared using conventional gallium FIB. Moreover, the surface quality after 2 kV final polishing with the Xe beam is exceptional with only about 3 nm of amorphized surface present. The sample quality was of a suitably high quality to allow atomic resolution high-angle annular dark field imaging and integrated differential phase contrast without any further preparation, and the resulting images were good enough for quantitative evaluation of atomic positions to reveal the oxygen octahedral tilt pattern. This suggests that such xenon plasma FIB instruments may find widespread application in transmission electron microscope and scanning transmission electron microscope specimen preparation.
Journal Article