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210 result(s) for "Madison, Thomas J."
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Perinatal Western‐style diet exposure associated with altered sensory functional connectivity in infant Japanese macaques
Sensory processing disorder (SPD) is a neurodevelopmental condition characterized by impaired sensory discrimination and responsivity. Although the causes and neural correlates of SPD remain poorly understood, prenatal influences should be considered, as the prenatal environment is strongly implicated in the progression of neurodevelopmental disorders. One factor hypothesized to promote SPD is perinatal Western‐style diet (WSD) exposure. This study explored the effects of perinatal WSD exposure on the proposed neural correlates of SPD in Japanese macaques. Functional connectivity between sensory and emotional processing areas was assessed at 4 months of age using resting‐state functional magnetic resonance imaging (rs‐fMRI). A machine learning model successfully predicted perinatal diet group based on functional connectivity strengths, indicating that differences in sensory connectivity exist between diet groups. Intra‐somatomotor, visual‐auditory, somatomotor‐auditory, somatomotor‐visual, and intra‐visual network connections demonstrated the greatest differences between groups, with primary motor cortex connectivity being the most impacted. Connections to the amygdala were not major contributors to accurate model performance, but amygdala connectivity, especially to the somatomotor network, may still be a weak driver of model performance. These findings suggest that a proposed predictor of SPD, perinatal WSD exposure, impacts the functional connectivity of sensory processing areas relevant in SPD during early infancy. Perinatal Western‐style diet exposure was associated with altered functional connectivity in sensory and emotional processing areas in 4‐month‐old macaques.
Spearfishing-induced behavioral changes of an unharvested species inside and outside a marine protected area
By prohibiting fishing, marine protected areas (MPAs) provide a refuge for harvested species. Humans are often perceived as predators by prey and therefore respond fearfully to humans. Thus, fish responses to humans inside and outside of an MPA can provide insights into their perception of humans as a predatory threat. Previous studies have found differences in the distance that har- vested species of fish initiate flight (flight initiation distance--FID) from humans inside and outside an MPA, but less is known about unharvested species. We focused on whether the lined bristle- tooth Ctenochaetus striatus, an unharvested surgeonfish, can discriminate between a snorkeler and a snorkeler with a spear gun inside and outside of a no-take MPA in Mo'orea, French Polynesia. Additionally, we incorporated starting distance (the distance between the person and prey at the start of an experimental approach), a variable that has been found to be important in as- sessing prey escape decisions in terrestrial species, but that has not been extensively studied in aquatic systems. Lined bristletooth FID was significantly greater in the presence of a spear gun and varied depending on if the spear gun encounter was inside or outside of the MPA. These results imply a degree of sophistication of fish antipredator behavior, generate questions as to how a non- targeted species of fish could acquire fear of humans, and demonstrate that behavioral surveys can provide insights about antipredator behavior.
Precision Functional Neuroimaging Reveals Individually Specific Auditory Responses in Infants
Adaptively responding to salient stimuli in the environment is a fundamental feature of cognitive development in early life, which is enabled by the developing brain. Understanding individual variability in how the brain supports this fundamental process is essential for uncovering neurodevelopmental trajectories and potential neurodevelopmental risks. In the present study, we used a precision functional imaging approach to probe activation in response to salient auditory stimuli and its relation to brain functional networks in individual infants. A minimum of 60 minutes of fMRI BOLD data with an auditory oddball paradigm were collected in ten infants with a mean postmenstrual age of 48 weeks. Results demonstrate the feasibility of performing a precision functional imaging study to investigate individual specific responses to salient stimuli in infants. While responses to the auditory oddball were consistent between individuals in auditory processing areas, responses across the rest of the brain differed across individuals in their magnitude and shape. Individual specific response patterns appeared to be relatively stable and differed from other participant's response patterns, despite fluctuations across runs. Commonalities and differences between individuals demonstrated in this sample contribute to our understanding of how the developing brain instantiates processing of salient stimuli. Our findings suggest that during early development, early unimodal processing is well conserved across individuals, however subsequent perceptual processing is still being personally defined. In this context, individual specific response patterns could be a promising target for biomarkers of normative brain and cognitive development.
fMRIPrep Lifespan: Extending A Robust Pipeline for Functional MRI Preprocessing to Developmental Neuroimaging
The adoption of a standardized preprocessing workflow is vital for fostering community, sharing, and reproducibility. fMRIPrep has been a critical advancement towards this end, however, it is limited in its capacity to be applied to data across the lifespan, starting from infancy. Here, we introduce fMRIPrep Lifespan, an extension of fMRIPrep that extends the standardized processing from childhood to senescence to include neonatal, infant, and toddler structural and functional MRI data preprocessing. This effort involves a NiPreps integration of 1) a workflow akin to fMRIPrep optimized for MRI data in the first years of life (previously NiBabies) and 2) upstream enhancements to the entire NiPreps suite, including multi-echo data processing, modularization of workflow components, and convergence of processing with other popular workflows (ABCD-BIDS, Human Connectome Project Pipelines). Using data from the Baby Connectome Project (participants 1-43 months of age), we demonstrate that fMRIPrep Lifespan produces high-quality outputs across a wide age range. Moving forward, the scalable, modular infrastructure of fMRIPrep Lifespan will ensure adaptability to data from birth to old age while maintaining robust and reproducible frameworks for functional MRI research across the lifespan.
Heritability estimation of subcortical volumes in a multi-ethnic multi-site cohort study
Heritability of regional subcortical brain volumes (rSBVs) describes the role of genetics in middle and inner brain development. rSBVs are highly heritable in adults but are not characterized well in adolescents. The Adolescent Brain Cognitive Development study (ABCD), taken over 22 US sites, provides data to characterize the heritability of subcortical structures in adolescence. In ABCD, site-specific effects co-occur with genetic effects which can bias heritability estimates. Existing methods adjusting for site effects require additional steps to adjust for site effects and can lead to inconsistent estimation. We propose a random-effect model-based method of moments approach that is a single step estimator and is a theoretically consistent estimator even when sites are imbalanced and performs well under simulations. We compare methods on rSBVs from ABCD. The proposed approach yielded heritability estimates similar to previous results derived from single-site studies. The cerebellum cortex and hippocampus were the most heritable regions (> ).
Multi-echo Acquisition and Thermal Denoising Advances Precision Functional Imaging
The characterization of individual functional brain organization with Precision Functional Mapping has provided important insights in recent years in adults. However, little is known about the ontogeny of inter-individual differences in brain functional organization during human development. Precise characterization of systems organization during periods of high plasticity is likely to be essential for discoveries promoting lifelong health. Obtaining precision fMRI data during development has unique challenges that highlight the importance of establishing new methods to improve data acquisition, processing, and analysis. Here, we investigate two methods that can facilitate attaining this goal: multi-echo (ME) data acquisition and thermal noise removal with Noise Reduction with Distribution Corrected (NORDIC) principal component analysis. We applied these methods to precision fMRI data from adults, children, and newborn infants. In adults, both ME acquisitions and NORDIC increased temporal signal to noise ratio (tSNR) as well as the split-half reliability of functional connectivity matrices, with the combination helping more than either technique alone. The benefits of NORDIC denoising replicated in both our developmental samples. ME acquisitions revealed longer and more variable T2* relaxation times across the brain in infants relative to older children and adults, leading to major differences in the echo weighting for optimally combining ME data. This result suggests ME acquisitions may be a promising tool for optimizing developmental fMRI, albeit application in infants needs further investigation. The present work showcases methodological advances that improve Precision Functional Mapping in adults and developmental populations and, at the same time, highlights the need for further improvements in infant specific fMRI.
Restoration Trajectory of the South San Diego Bay Salt Ponds
Despite the importance of the ecosystem services wetlands provide, a significant amount of wetland area has been lost and what remains is often degraded by human activity, including the conversion of wetlands to artificial salt ponds. One way to compensate for the loss of historic wetlands and habitat conversion is restoration. The focus of this thesis is the restoration of two subtidal salt ponds in San Diego Bay back to tidal vegetated salt marsh. This study examined the restoration trajectory of these two ponds over time in comparison with an adjacent unaltered marsh. Benthic macroinvertebrate communities and food web structure in the ponds were analyzed in pre- and post-restoration time periods over seven years to track restoration progress. Both invertebrate abundance and diversity increased in restored ponds over time, although at a quicker rate in one pond. A more complex food web also developed sooner for some feeding groups in this same pond. Invertebrate community structure in the two restored ponds followed different trajectories of change than the unaltered marsh. These results were compared to analysis of M-AMBI, a macrobenthic index to assess ecosystem health, which indicated that traditional monitoring metrics like abundance do not always correlate to ecosystem health. These results demonstrate how different statistical analyses and metrics can be used to assess salt marsh restoration in lieu of a proper reference site. In addition, they demonstrate that macrofauna communities can experience a relatively quick recovery following salt pond restoration and that this recovery is facilitated by the location of a marsh and increased tidal influence.
Precision functional imaging in infants using multi-echo fMRI at 7T
Personalized functional brain developmental trajectories can be studied with Precision Functional Mapping (PFM). Our previous work has demonstrated that PFM can be achieved in infants despite rapid brain growth. However, even with extensive data collection (up to 1 hour of fMRI), the reliability and precision of these maps remain lower than those observed in youth and adults - particularly within subcortical structures. In this work we demonstrate the utility of high-field 7T MRI compared to 3T MRI for facilitating PFM in infants. We showcase data from multi-echo fMRI acquisitions in the same infants at both 7T and 3T and demonstrate that 7T imaging in infants is safe and feasible with our subject-specific safety workflow. Moreover, we demonstrate that the use of a higher magnetic field strength affords a spatial resolution more appropriately matched to infants' smaller head and brain sizes, yielding notable improvements in data quality, especially for PFM. The increase in both spatial precision and reliability also suggests that 7T MRI can reduce the amount of data required for PFM. Last, we show how ultra-high field imaging can help us study the development of subcortical-to-cortical connectivity patterns, crucial for understanding brain development during this developmental window. 7T MRI is a promising new avenue for developmental cognitive neuroscience.
New Era for Highways Demands New Financing
Recently, the U.S. Congress passed a last-minute measure to add general revenues to the Highway Trust Fund so the Federal Highway Administration could continue to reimburse States for Federal-aid construction costs.
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