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Sponges host a remarkable diversity of microbial symbionts, however, the benefit their microbes provide is rarely understood. Here, we describe two new sponge species from deep-sea asphalt seeps and show that they live in a nutritional symbiosis with methane-oxidizing (MOX) bacteria. Metagenomics and imaging analyses revealed unusually high amounts of MOX symbionts in hosts from a group previously assumed to have low microbial abundances. These symbionts belonged to the Marine Methylotrophic Group 2 clade. They are host-specific and likely vertically transmitted, based on their presence in sponge embryos and streamlined genomes, which lacked genes typical of related free-living MOX. Moreover, genes known to play a role in host–symbiont interactions, such as those that encode eukaryote-like proteins, were abundant and expressed. Methane assimilation by the symbionts was one of the most highly expressed metabolic pathways in the sponges. Molecular and stable carbon isotope patterns of lipids confirmed that methane-derived carbon was incorporated into the hosts. Our results revealed that two species of sponges, although distantly related, independently established highly specific, nutritional symbioses with two closely related methanotrophs. This convergence in symbiont acquisition underscores the strong selective advantage for these sponges in harboring MOX bacteria in the food-limited deep sea.

Identification of benthic megafauna is commonly based on analysis of physical samples or imagery acquired by cameras mounted on underwater platforms. Physical collection of samples is difficult, particularly from the deep sea, and identification of taxonomic morphotypes from imagery depends on resolution and investigator experience. Here, we show how an Underwater Hyperspectral Imager (UHI) can be used as an alternative in situ taxonomic tool for benthic megafauna. A UHI provides a much higher spectral resolution than standard RGB imagery, allowing marine organisms to be identified based on specific optical fingerprints. A set of reference spectra from identified organisms is established and supervised classification performed to identify benthic megafauna semi-autonomously. The UHI data provide an increased detection rate for small megafauna difficult to resolve in standard RGB imagery. In addition, seafloor anomalies with distinct spectral signatures are also detectable. In the region investigated, sediment anomalies (spectral reflectance minimum at ~675 nm) unclear in RGB imagery were indicative of chlorophyll a on the seafloor. Underwater hyperspectral imaging therefore has a great potential in seafloor habitat mapping and monitoring, with areas of application ranging from shallow coastal areas to the deep sea.

In 2003, the Chapopote asphalt flow was discovered in the southern Gulf of Mexico at a depth of 2,900 m. Subsequent exploration has expanded the known extent of asphalt volcanism across abyssal depths in much of this region. Aspects of asphalt flow morphology are analogous to ropy pāhoehoe flows known from eruptions of basaltic lava on land, but the timing and formation sequence of asphalt flows has been difficult to infer because limited visibility in the deep ocean makes it challenging to image large areas of the seafloor. Combining data from autonomous under-water vehicle mapping and remotely operated vehicle navigation with powerful optical mosaicking techniques, we assembled georeferenced images of the Chapopote asphalt flows. The largest image captured an area of 3,300 m² with over 15 billion pixels and resolved objects at centimeter scale. Augmenting this optical resolution with microbathymetry led to the recognition that very large asphalt pavements exhibiting highly varied morphologies and weathering states comprised a series of at least three separate flow units, one on top of another. The Chapopote asphalt volcano likely erupts during phases of intensified activity separated by periods of reduced activity. After extrusion, chemical and physical changes in the asphalt generate increasing viscosity gradients both along the flow path and between the flow’s surface and core. This allows the asphalt to form pāhoehoe lava-like shapes and to support dense chemosynthetic communities over timescales of hundreds of years.

Hydrothermal systems at ultraslow-spreading mid-ocean ridges remain poorly characterized, particularly where sedimentary and ultramafic influences intersect. Here we present geochemical analyses of vent fluids collected in 2024 from the Jøtul hydrothermal field on the northern Knipovich Ridge. Major element concentrations, dissolved gases, and thermodynamic modeling are used to investigate fluid-rock interactions. The fluids exhibit exceptionally high CH 4 concentrations, that exceed those at the Guaymas Basin, and display characteristics typical of sediment-hosted hydrothermal systems, indicating thermal decomposition of organic matter in clastic sediments. In contrast, high H 2 (>15 mM) and low H 2 S concentrations are more typical of ultramafic-hosted fluids, while geological evidence indicates that the vent field lies atop a detachment fault. Thermodynamic modeling suggests that these high H 2 /H 2 S ratios may result solely from degradation of organic matter followed by abiotic CH 4 oxidation at ~400 °C, rather than from reactions with ultramafic rocks. These results expand the known diversity of sediment-hosted vent fluid compositions and highlight fluid-sediment interaction as an underestimated source of carbon and hydrogen. Sedimented hydrothermal systems can be a significant source of hydrogen in addition to ultramafic rock-hosted systems, according to analysis of chemical data from hydrothermal vent fluids at the Jøtul hydrothermal field. Plain language summary Hydrothermal systems at ultraslow-spreading mid-ocean ridges are still not well understood, especially where vent fluids interact with sediments and ultramafic rocks. In this study, we present geochemical data from vent fluids collected in 2024 at the Jøtul hydrothermal field on the northern Knipovich Ridge. We analyzed major elements, dissolved gases, and used thermodynamic modeling to study how the fluids react with surrounding rocks. The fluids contain extremely high levels of CH 4 , even higher than those in the Guaymas Basin, and show features typical of sediment-hosted hydrothermal systems, suggesting that organic matter in clastic sediments has been broken down by the hot fluids. In contrast, the fluids also have high H 2 ( > 15 mM) and low H 2 S concentrations, which are common in vents hosted by ultramafic rocks and geological evidence suggests that the vent field sits on a detachment fault. Our thermodynamic modeling indicates that the high H 2 /H 2 S ratios could be explained by the breakdown of organic matter at around 400 °C, rather than by reactions with ultramafic rocks. These findings broaden our understanding of sediment-hosted vent systems and suggest that fluid-sediment interaction is a more important source of oceanic carbon and dissolved hydrogen than previously recognized.

Abyssal plain communities rely on the overlying water column for a settling flux of organic matter. The origin and rate of this flux as well as the controls on its fine-scale spatial distribution following seafloor settlement are largely unquantified. This is particularly true across regions where anthropogenically-induced seafloor disturbance has occurred. Here, we observed, quantified and mapped a mass deposition event of gelatinous zooplankton carcasses (pyrosomes) in July-September 2015 across one such physically disturbed region in the Peru Basin polymetallic nodule province (4150 m). Seafloor in this area was disturbed with a plough harrow in 1989 (as part of the DISCOL experiment) causing troughs in the sediment. Other parts were disturbed with an epibenthic sled (EBS) during a cruise in 2015 resulting in steep-walled, U-shaped troughs. We investigated two hypotheses: a) gelatinous food falls contribute significantly to the abyssal plain carbon pump and b) physical seafloor disturbance influences abyssal distribution of organic matter. We combined optical and bathymetric seafloor observations, to analyze pyrosome distribution on seabeds with different levels of disturbance. 2954 pyrosome colonies and associated taxa were detected in > 14,000 seafloor images. The mean regional carbon (C) deposition associated with pyrosome carcasses was significant compared to the flux of particulate organic C (182 to 1543%), and the total respired benthic C flux in the DISCOL Experimental Area (39 to 184%). EBS-disturbed seafloor tracks contained 72 times more pyrosome-associated C than an undisturbed reference site, and up to 4 times more than an area disturbed in 1989. Deposited pyrosomes collected had a higher proportion of labile fatty acids compared to the sediment. We document the temporal and spatial extent of an abyssal food fall event with unprecedented detail and show that physical seafloor disturbance results in the accumulation of detrital material. Such accumulation may reduce oxygen availability and alter benthic community structure. Understanding both the relevance of large food falls and the fine scale topography of the seafloor, is necessary for impact assessment of technologies altering seafloor integrity (e.g. as a result of bottom-trawling or deep seabed mining) and may improve their management on a global scale.

Future deep-sea mining for polymetallic nodules in abyssal plains will negatively impact the benthic ecosystem, but it is largely unclear whether this ecosystem will be able to recover from mining disturbance and if so, to what extent and at what timescale. During the “DISturbance and reCOLonization” (DISCOL) experiment, a total of 22 % of the seafloor within a 10.8 km2 circular area of the nodule-rich seafloor in the Peru Basin (SE Pacific) was ploughed in 1989 to bury nodules and mix the surface sediment. This area was revisited 0.1, 0.5, 3, 7, and 26 years after the disturbance to assess macrofauna, invertebrate megafauna and fish density and diversity. We used this unique abyssal faunal time series to develop carbon-based food web models for each point in the time series using the linear inverse modeling approach for sediments subjected to two disturbance levels: (1) outside the plough tracks; not directly disturbed by plough, but probably suffered from additional sedimentation; and (2) inside the plough tracks. Total faunal carbon stock was always higher outside plough tracks compared with inside plough tracks. After 26 years, the carbon stock inside the plough tracks was 54 % of the carbon stock outside plough tracks. Deposit feeders were least affected by the disturbance, with modeled respiration, external predation, and excretion rates being reduced by only 2.6 % inside plough tracks compared with outside plough tracks after 26 years. In contrast, the respiration rate of filter and suspension feeders was 79.5 % lower in the plough tracks after 26 years. The “total system throughput” (T..), i.e., the total sum of modeled carbon flows in the food web, was higher throughout the time series outside plough tracks compared with the corresponding inside plough tracks area and was lowest inside plough tracks directly after the disturbance (8.63 × 10−3 ± 1.58 × 10−5 mmol C m−2 d−1). Even 26 years after the DISCOL disturbance, the discrepancy of T.. between outside and inside plough tracks was still 56 %. Hence, C cycling within the faunal compartments of an abyssal plain ecosystem remains reduced 26 years after physical disturbance, and a longer period is required for the system to recover from such a small-scale sediment disturbance experiment.

Industrial interest in deep-sea mineral extraction began decades ago, and today it is at an all-time high, accelerated by global demand for metals. Several seafloor ecosystem disturbance experiments began in the 1970s, including the Disturbance and Recolonization experiment (DISCOL) conducted in the Peru Basin in 1989. A large seafloor disturbance was created by repeatedly ploughing the seafloor over an area of ∼10.8 km2. Though a number of studies in abyssal mining regions have evaluated megafaunal biodiversity and ecosystem responses, few have included quantitative and detailed data on fishes or scavengers despite their ecological importance as top predators. We used towed camera transects (1989–1996, 2015) and baited camera data (1989–1992) to evaluate the fish community at the DISCOL site. The abyssal fish community included 16 taxa and was dominated by Ipnops meadi. Fish density was lower in ploughed habitat at 6 months and 3 years following disturbance but thereafter increased over time. Twenty-six years after disturbance there were no differences in overall total fish densities between reference and experimental areas, but the dominant fish, I. meadi, still exhibited much lower densities in ploughed habitat, likely avoiding these areas and suggesting that the fish community remains affected after decades. At the scale of industrial mining, these results could translate to population-level effects. The scavenging community was dominated by eelpouts (Pachycara spp.), hermit crabs (Probeebei mirabilis) and shrimp. The large contribution of hermit crabs appears to be unique amongst abyssal scavenger studies worldwide. The abyssal fish community at DISCOL was similar to that in the more northerly Clarion–Clipperton Zone (CCZ), though some species have only been observed at DISCOL thus far. Also, further species-level identifications are required to refine this assessment. Additional studies across the polymetallic nodule provinces of the Pacific are required to further evaluate the environmental drivers of fish density, diversity and species biogeographies. This information will be important for the development of appropriate management plans aimed at minimizing human impact from deep-sea mining.

Since the late 1980s, various experiments have been conducted in polymetallic nodule fields of the Pacific Ocean to assess the potential environmental impacts of future mining, specifically in two areas: the Peru Basin and the Clarion-Clipperton Fracture Zone (CCZ). Two expeditions, SO242/2 in 2015 (Peru Basin) and SO268/1 + 2 in 2019 (CCZ), deployed a towed camera system to collect imagery from both areas. These expeditions aimed to assess recovery of fauna in the short (few weeks) and long term (several years) following physical seafloor disturbance actions designed to mimic potential mining, by ploughs, dredges and epibenthic sleds. Within the collected image data, several strikingly hexagonal hole patterns were observed and identified as Paleodictyon nodosum , and an irregular form of Paleodictyon traces, both on undisturbed and disturbed areas of seafloor. Recent forms occur abundantly in various deep-sea regions, but their origin, and how they represent the mode of life of the forming organism, remains unknown. In this study, the imaged occurrences of Paleodictyon traces on disturbed seafloor sheds light on the lifecycle of the forming organism, demonstrating that they can recolonize disturbed habitat and produce the trace network in a few weeks. Nevertheless, the density of these patterns on disturbed substrates was lower than observed on undisturbed substrates in both nodule regions. We therefore hypothesize that, along with other benthic deep-sea fauna, these structures and the forming organism are impacted by physical seafloor disturbance, and even 26 years after disturbance, densities on disturbed sediments have not recovered to undisturbed levels.

With the mining of polymetallic nodules from the deep-sea seafloor once more evoking commercial interest, decisions must be taken on how to most efficiently regulate and monitor physical and community disturbance in these remote ecosystems. Image-based approaches allow non-destructive assessment of the abundance of larger fauna to be derived from survey data, with repeat surveys of areas possible to allow time series data collection. At the time of writing, key underwater imaging platforms commonly used to map seafloor fauna abundances are autonomous underwater vehicles (AUVs), remotely operated vehicles (ROVs) and towed camera “ocean floor observation systems” (OFOSs). These systems are highly customisable, with cameras, illumination sources and deployment protocols changing rapidly, even during a survey cruise. In this study, eight image datasets were collected from a discrete area of polymetallic-nodule-rich seafloor by an AUV and several OFOSs deployed at various altitudes above the seafloor. A fauna identification catalogue was used by five annotators to estimate the abundances of 20 fauna categories from the different datasets. Results show that, for many categories of megafauna, differences in image resolution greatly influenced the estimations of fauna abundance determined by the annotators. This is an important finding for the development of future monitoring legislation for these areas. When and if commercial exploitation of these marine resources commences, robust and verifiable standards which incorporate developing technological advances in camera-based monitoring surveys should be key to developing appropriate management regulations for these regions.

Mining polymetallic nodules on abyssal plains will have adverse impacts on deep-sea ecosystems, but it is largely unknown whether the impacted ecosystem will recover, and if so at what rate. In 1989 the “DISturbance and reCOLonization” (DISCOL) experiment was conducted in the Peru Basin where the seafloor was disturbed with a plough harrow construction to explore the effect of small-scale sediment disturbance from deep-sea mining. Densities of Holothuroidea in the region were last investigated 7 yr post-disturbance, before 19 yr later, the DISCOL site was re-visited in 2015. An “ocean floor observatory system” was used to photograph the seabed across ploughed and unploughed seafloor and at reference sites. The images were analyzed to determine the Holothuroidea population density and community composition, which were combined with in situ respiration measurements of individual Holothuroidea to generate a respiration budget of the study area. For the first time since the experimental disturbance, similar Holothuroidea densities were observed at the DISCOL site and at reference sites. The Holothuroidea assemblage was dominated by Amperima sp., Mesothuria sp., and Benthodytes typica, together contributing 46% to the Holothuroidea population density. Biomass and respiration were similar among sites, with a Holothuroidea community respiration of 5.84 × 10−4 ± 8.74 × 10−5 mmol C m−2 d−1 at reference sites. Although these results indicate recovery of Holothuroidea, extrapolations regarding recovery from deep-sea mining activities must be made with caution: results presented here are based on a relatively small-scale disturbance experiment as compared to industrial-scale nodule mining, and also only represent one taxonomic class of the megafauna.