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"Martins, José M."
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Determining the minimum ripening time of artisanal Minas cheese, a traditional Brazilian cheese
by
Galinari, Éder
,
Pimentel-Filho, Natan J.
,
Ferreira, Célia L.L.F.
in
Acids
,
Bacterial Load
,
Brazil
2015
Physical, physicochemical, and microbiological changes were monitored in 256 samples of artisanal Minas cheese from eight producers from Serro region (Minas Gerais, Brazil) for 64 days of ripening to determine the minimum ripening time for the cheese to reach the safe microbiological limits established by Brazilian legislation. The cheeses were produced between dry season (April-September) and rainy season (October-March); 128 cheeses were ripened at room temperature (25 ± 4 °C), and 128 were ripened under refrigeration (8 ± 1 °C), as a control. No Listeria monocytogenes was found, but one cheese under refrigeration had Salmonella at first 15 days of ripening. However, after 22 days, the pathogen was not detected. Seventeen days was the minimum ripening time at room temperature to reduce at safe limits of total coliforms > 1000 cfu.g (-1) ), Escherichia coli and Staphylococcus aureus (> 100 cfu.g (-1) ) in both periods of manufacture. Otherwise under refrigeration, as expected, the minimum ripening time was longer, 33 days in the dry season and 63 days in the rainy season. To sum up, we suggest that the ripening of artisanal Minas cheese be done at room temperature, since this condition shortens the time needed to reach the microbiological quality that falls within the safety parameters required by Brazilian law, and at the same time maintain the appearance and flavor characteristics of this traditional cheese.
Journal Article
Assessment of distribution and sources of pyrogenic carbon in the lower course of the Guadiana River (SW Iberian Peninsula)
by
Martins, José M.
,
Araújo, M. Fátima
,
Soares, António Monge
in
Algae
,
Anthropogenic factors
,
biomass
2015
Purpose
The main goal of this work was to determine the pyrogenic carbon (PyC) distribution in surficial sediments for the last 40 km of the Guadiana River (SW Iberian Peninsula). In addition, the changes in the contribution of terrestrial and marine organic matter (OM) sources and their relationship with the PyC contents were assessed.
Materials and methods
Sediments were collected from 22 stations within the lower course of the Guadiana River. All the samples were analyzed for total organic carbon (TOC), total nitrogen (TN), organic carbon to nitrogen atomic ratios (C/N), and stable carbon isotope ratio (δ
13
C) as indicators of changes in the sources of OM. PyC was determined according to the chemo-thermal oxidation method (CTO-375).
Results and discussion
TOC ranged from 0.25 to 2.37 %dw. The greatest TOC contents were located in sediments collected at the middle estuary. The C/N values ranged from 7.7 to 12.7, with slight relative increase in the marine input compared to pre-Alqueva times. Similar C/N ranges are representative of native soil OM, lacustrine OM, and local sedimentary OM. The δ
13
C values of the sediment samples ranged from –25.0 to –27.6 ‰ illustrating a signature of C
3
higher plants, marsh-plants, lacustrine plants, and freshwater algae present in the area of study and in the forests located upstream. PyC ranged between 0.17 and 0.74 gkg
−1
, with the highest contents measured in samples located close to urbanized areas. Sediments collected at the middle estuary, within a rural area, showed the lowest proportions of PyC relative to the percent of TOC (≤4 % TOC). The negative relationship between PyC to TOC ratio and TOC contents confirmed the selective preservation of PyC to degradation in the sedimentary OM of the Guadiana estuary. The carbon isotope composition of the final material after applying the CTO-375 method (hereafter called δ
13
C
PyC
) was ˂–30 ‰, suggesting that the PyC fraction was mainly composed of a mixture of fossil fuels and C
3
-charred biomass. Nevertheless, selective loss of the less recalcitrant OM fractions due to degradation and/or chemical alteration might contribute to lighter carbon isotope values of PyC.
Conclusions
Geochemical data showed that sedimentary OM was composed of a mix of different OM sources, with a slight increase in the marine input after the Alqueva dam went into operation. The PyC content was higher close to urbanized areas of the Guadiana River estuary. The selective preservation of PyC in the sedimentary OM of the Guadiana estuary was observed.
Journal Article
Population genetic structure and conservation of the Azorean tree Prunus azorica (Rosaceae)
by
Maciel, Maria Graciete B.
,
Martins, José M.
,
Sardos, Julie
in
Alleles
,
Archipelagoes
,
Biomedical and Life Sciences
2013
Prunus azorica is an endangered tree endemic to the Azores Archipelago, considered as a top priority species for conservation. Although propagation measures have been studied in detail, and a broad phylogeographic study on P. lusitanica was recently published, a detailed population genetics study devoted to Azorean taxon was lacking. To determine extant patterns of population genetic structure in P. azorica, we analysed eight populations from the five Azorean islands where the species presently occurs and the only extant individual from Flores Island. We also included samples of P. lusitanica subsp. hixa from the Canary Islands and Madeira, and of P. lusitanica subsp. lusitanica from mainland Portugal. Genotyping was undertaken for eight nuclear microsatellite polymorphic loci specifically isolated for P. azorica. Accessions of the different geographic regions were used to sequence ITS and trnL DNA regions. Regarding SSRs, the number of alleles ranged from 5 to 37 (mean = 12.6) per locus and from 2 to 64 per population (mean = 24). Our analysis showed a clear separation between samples from the Azores and those from other regions. Overall, São Miguel populations seemed to encompass the majority of the variability found within the archipelago. Regarding the Azorean populations only, the highest percentage of genetic variation was found within populations (92 %). Still, about 7 % of the variation was found among populations within islands. Expected heterozygosity ranged from values near 0 in the most depauperate populations up to 0.18. With a few exceptions, the level of differentiation between Azorean populations was generally low and gene flow was clearly above 1. Analysis of ITS sequences also detected differences between the Azores and the remaining regions but the trnL region did not reveal any variation. The genetic identity of P. azorica was recognised and thus should be preserved; however, the present results suggest that the Azorean taxon should be reinstated at the subspecies level.
Journal Article
Effects of ileo-rectal anastomosis on cholesterol metabolism in pigs fed either casein or extruded soya beans
by
Almeida, José A. A.
,
Freire, João P. B.
,
Martins, José M.
in
Acids
,
Anastomosis, Surgical - methods
,
Animals
2004
The importance of legume proteins in cholesterol metabolism has been recognised, but the hindgut contribution is still unclear. The present work was undertaken to address the role of the caecum–colon in cholesterol metabolism in intact (I) and ileo-rectal anastomosed (IRA) pigs fed with casein or extruded soyabean (ES) diets. Four groups of six growing pigs were assigned to the treatments (casein–I, casein–IRA, ES–I, ES–IRA) for 3 weeks. Plasma total cholesterol, LDL- and HDL-cholesterol were not modified by surgery or diet. In the liver, the ES diet significantly depressed non-esterified, esterified and total cholesterol. The treatments did not affect hepatic 3-hydroxy-3-methylglutaryl CoA reductase, cholesterol 7α-hydroxylase or sterol 27-hydroxylase activities. In the gallbladder bile of ES-fed pigs, total cholesterol was depressed while total bile acid concentration was increased. IRA and the ES diet markedly decreased the biliary bile acid microbial metabolites (namely hyodeoxycholic acid) and increased the primary bile acids (mainly hyocholic acid). The concentration of bile hydrophobic acids was decreased only by the ES diet. Faecal neutral sterol output was increased in ES-fed pigs, but the bile acid and the sum of neutral and acidic steroid outputs were not. Microbial transformation of neutral and acidic steroids was markedly reduced by IRA, especially in the ES-fed pigs. Thus, surgery and ES modulated the steroid profile but the caecum–colon did not seem to play a crucial role in determining cholesterolaemia in pigs.
Journal Article
Diversity across major and candidate genes in European local pig breeds
by
Génétique Animale et Biologie Intégrative (GABI) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech
,
Associazione Nazionale Allevatori Suini
,
Tibau, Joan
in
Adaptation
,
Admixtures
,
Agriculture
2018
The aim of this work was to analyse the distribution of causal and candidate mutations associated to relevant productive traits in twenty local European pig breeds. Also, the potential of the SNP panel employed for elucidating the genetic structure and relationships among breeds was evaluated. Most relevant genes and mutations associated with pig morphological, productive, meat quality, reproductive and disease resistance traits were prioritized and analyzed in a maximum of 47 blood samples from each of the breeds (Alentejana, Apulo-Calabrese, Basque, Bísara, Majorcan Black, Black Slavonian (Crna slavonska), Casertana, Cinta Senese, Gascon, Iberian, Krškopolje (Krškopoljski), Lithuanian indigenous wattle, Lithuanian White Old Type, Mora Romagnola, Moravka, Nero Siciliano, Sarda, Schwäbisch-Hällisches Schwein (Swabian Hall pig), Swallow-Bellied Mangalitsa and Turopolje). We successfully analyzed allelic variation in 39 polymorphisms, located in 33 candidate genes. Results provide relevant information regarding genetic diversity and segregation of SNPs associated to production and quality traits. Coat color and morphological trait-genes that show low level of segregation, and fixed SNPs may be useful for traceability. On the other hand, we detected SNPs which may be useful for association studies as well as breeding programs. For instance, we observed predominance of alleles that might be unfavorable for disease resistance and boar taint in most breeds and segregation of many alleles involved in meat quality, fatness and growth traits. Overall, these findings provide a detailed catalogue of segregating candidate SNPs in 20 European local pig breeds that may be useful for traceability purposes, for association studies and for breeding schemes. Population genetic analyses based on these candidate genes are able to uncover some clues regarding the hidden genetic substructure of these populations, as the extreme genetic closeness between Iberian and Alentejana breeds and an uneven admixture of the breeds studied. The results are in agreement with available knowledge regarding breed history and management, although largest panels of neutral markers should be employed to get a deeper understanding of the population's structure and relationships.
Journal Article
Marine Radiocarbon Reservoir Effect in Late Pleistocene and Early Holocene Coastal Waters off Northern Iberia
Radiocarbon dating of closely associated marine mollusk shells and terrestrial material (mammal bones or charred wood) collected from archaeological contexts in northern Atlantic Iberian coastal areas is used to quantify the marine 14C reservoir effect (ΔR) for the coastal waters off the Cantabrian coast of northern Iberia. For the first time, ΔR values were reliably determined for these coastal waters and, also for the first time, a ΔR was calculated for the Late Pleistocene in Atlantic Iberia. Pairs of coeval samples of different carbon reservoirs selected from Upper Paleolithic (Late Pleistocene) and Mesolithic (Early Holocene) contexts yielded ΔR weighted mean values of –117±70 14C yr and –105±21 14C yr, respectively. These values show oceanographic conditions characterized by a reduced offset between atmospheric and surface water 14C contents, suggesting a nonexistent or very weak upwelling and some stratification of the water column. Similar oceanographic conditions have been recorded in other areas of Atlantic Iberia during the Holocene, such as off Andalusian and northwestern Galician coasts. Results not only provide useful information on environmental conditions but also a framework to obtain more precise and reliable absolute chronologies for the Late Pleistocene and Early Holocene in northern Iberia.
Journal Article
Atrial septal defects
by
Geva, Tal
,
Wald, Rachel M
,
Martins, Jose D
in
Biological and medical sciences
,
Cardiac arrhythmia
,
Cardiac Catheterization - methods
2014
Atrial septal defects are the third most common type of congenital heart disease. Included in this group of malformations are several types of atrial communications that allow shunting of blood between the systemic and the pulmonary circulations. Most children with isolated atrial septal defects are free of symptoms, but the rates of exercise intolerance, atrial tachyarrhythmias, right ventricular dysfunction, and pulmonary hypertension increase with advancing age and life expectancy is reduced in adults with untreated defects. The risk of development of pulmonary vascular disease, a potentially lethal complication, is higher in female patients and in older adults with untreated defects. Surgical closure is safe and effective and when done before age 25 years is associated with normal life expectancy. Transcatheter closure offers a less invasive alternative for patients with a secundum defect who fulfil anatomical and size criteria. In this Seminar we review the causes, anatomy, pathophysiology, treatment, and outcomes of atrial septal defects in children and adult patients in whom this defect is the primary cardiac anomaly.
Journal Article
Diversity across major and candidate genes in European local pig breeds
2018
The aim of this work was to analyse the distribution of causal and candidate mutations associated to relevant productive traits in twenty local European pig breeds. Also, the potential of the SNP panel employed for elucidating the genetic structure and relationships among breeds was evaluated. Most relevant genes and mutations associated with pig morphological, productive, meat quality, reproductive and disease resistance traits were prioritized and analyzed in a maximum of 47 blood samples from each of the breeds (Alentejana, Apulo-Calabrese, Basque, Bísara, Majorcan Black, Black Slavonian (Crna slavonska), Casertana, Cinta Senese, Gascon, Iberian, Krškopolje (Krškopoljski), Lithuanian indigenous wattle, Lithuanian White Old Type, Mora Romagnola, Moravka, Nero Siciliano, Sarda, Schwäbisch-Hällisches Schwein (Swabian Hall pig), Swallow-Bellied Mangalitsa and Turopolje). We successfully analyzed allelic variation in 39 polymorphisms, located in 33 candidate genes. Results provide relevant information regarding genetic diversity and segregation of SNPs associated to production and quality traits. Coat color and morphological trait-genes that show low level of segregation, and fixed SNPs may be useful for traceability. On the other hand, we detected SNPs which may be useful for association studies as well as breeding programs. For instance, we observed predominance of alleles that might be unfavorable for disease resistance and boar taint in most breeds and segregation of many alleles involved in meat quality, fatness and growth traits. Overall, these findings provide a detailed catalogue of segregating candidate SNPs in 20 European local pig breeds that may be useful for traceability purposes, for association studies and for breeding schemes. Population genetic analyses based on these candidate genes are able to uncover some clues regarding the hidden genetic substructure of these populations, as the extreme genetic closeness between Iberian and Alentejana breeds and an uneven admixture of the breeds studied. The results are in agreement with available knowledge regarding breed history and management, although largest panels of neutral markers should be employed to get a deeper understanding of the population’s structure and relationships.
Journal Article
Regional Fertility Data Analysis: A Small Area Bayesian Approach
We use small area Bayesian statistics to develop a model for age-specific fertility rates. The model is then used to estimate age-specific fertility rates and
total fertility rates at the regional NUTS III area level for Portugal. The chapter makes important contributions to small area Bayesian statistics in a spatial
domain focusing on estimation of fertility rates. The estimates obtained are
useful for demographic policy in Portugal.
Book Chapter
Reprodução do nematoide-das-galhas da goiabeira em acessos de Psidium
by
Eduardo José de Almeida
,
Juliana Martins Ribeiro
,
Pedro Martins Ribeiro Júnior
in
Agriculture
,
araçazeiro
,
araçá
2017
O declínio da goiabeira, doença complexa causada pela interação entre Meloidogyne enterolobii e Fusarium solani, vem causando danos à produção e tem inviabilizado áreas de cultivo desta frutífera no Submédio do Vale do São Francisco. O manejo desta doença é difícil, pois as cultivares plantadas são suscetíveis ao nematoide, os nematicidas não têm apresentado eficiência e o uso de fungicidas para controle da fusariose, ainda, não foi avaliado. Contudo, alguns genótipos de Psidium, como araçazeiros, apresentam resistência a esse nematoide e, por conseguinte, resistência ao declínio. O objetivo deste trabalho foi avaliar a interação entre genótipos de Psidium spp. e M. enterolobii, visando a identificação de plantas resistentes. Foram utilizados três genótipos de araçazeiro provenientes dos estados de São Paulo e Paraná que foram inoculados artificialmente com M. enterolobii e comparadas com P. guajava 'Paluma', cultivar comercial suscetível ao nematoide-das-galhas. Todas as espécies de araçazeiros avaliadas se mostraram resistentes à doença, apresentando baixo fator de reprodução (0,000 a 0,004) em comparação com a cultivar Paluma (FR = 1,610). Esses resultados demonstram que os araçazeiros avaliados têm potencial para serem utilizadas no desenvolvimento de porta-enxertos resistentes ao declínio da goiabeira.
Journal Article