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Over the last decade, West African coastal countries, including Ghana, have experienced extensive economic damage due to illegal, unreported and unregulated (IUU) fishing activity, estimated at about USD 100 million in losses each year. Illegal, unreported and unregulated fishing poses an enormous threat to the conservation and management of the dwindling fish stocks, causing multiple adverse consequences for fisheries, coastal and marine ecosystems and for the people who depend on these resources. The Integrated System for Surveillance of Illegal, Unlicensed and Unreported Fishing (INSURE) is an efficient and inexpensive system that has been developed for the monitoring of IUU fishing in Ghanaian waters. It makes use of fast-delivery Earth observation data from the synthetic aperture radar instrument on Sentinel-1 and the Multi Spectral Imager on Sentinel-2, detecting objects that differ markedly from their immediate background using a constant false alarm rate test. Detections are matched to, and verified by, Automatic Identification System (AIS) data, which provide the location and dimensions of ships that are legally operating in the region. Matched and unmatched data are then displayed on a web portal for use by coastal management authorities in Ghana. The system has a detection success rate of 91% for AIS-registered vessels, and a fast throughput, processing and delivering information within 2 h of acquiring the satellite overpass. However, over the 17-month analysis period, 75% of SAR detections have no equivalent in the AIS record, suggesting significant unregulated marine activity, including vessels potentially involved in IUU. The INSURE system demonstrated its efficiency in Ghana’s exclusive economic zone and it can be extended to the neighbouring states in the Gulf of Guinea, or other geographical regions that need to improve fisheries surveillance.

In the past twenty years marine biotoxin analysis in routine regulatory monitoring has advanced significantly in Europe (EU) and other regions from the use of the mouse bioassay (MBA) towards the high-end analytical techniques such as high-performance liquid chromatography (HPLC) with tandem mass spectrometry (MS). Previously, acceptance of these advanced methods, in progressing away from the MBA, was hindered by a lack of commercial certified analytical standards for method development and validation. This has now been addressed whereby the availability of a wide range of analytical standards from several companies in the EU, North America and Asia has enhanced the development and validation of methods to the required regulatory standards. However, the cost of the high-end analytical equipment, lengthy procedures and the need for qualified personnel to perform analysis can still be a challenge for routine monitoring laboratories. In developing regions, aquaculture production is increasing and alternative inexpensive Sensitive, Measurable, Accurate and Real-Time (SMART) rapid point-of-site testing (POST) methods suitable for novice end users that can be validated and internationally accepted remain an objective for both regulators and the industry. The range of commercial testing kits on the market for marine toxin analysis remains limited and even more so those meeting the requirements for use in regulatory control. Individual assays include enzyme-linked immunosorbent assays (ELISA) and lateral flow membrane-based immunoassays (LFIA) for EU-regulated toxins, such as okadaic acid (OA) and dinophysistoxins (DTXs), saxitoxin (STX) and its analogues and domoic acid (DA) in the form of three separate tests offering varying costs and benefits for the industry. It can be observed from the literature that not only are developments and improvements ongoing for these assays, but there are also novel assays being developed using upcoming state-of-the-art biosensor technology. This review focuses on both currently available methods and recent advances in innovative methods for marine biotoxin testing and the end-user practicalities that need to be observed. Furthermore, it highlights trends that are influencing assay developments such as multiplexing capabilities and rapid POST, indicating potential detection methods that will shape the future market.

Population-level estimates of species' distributions can reveal fundamental ecological processes and facilitate conservation. However, these may be difficult to obtain for mobile species, especially colonial central-place foragers (CCPFs; e.g., bats, corvids, social insects), because it is often impractical to determine the provenance of individuals observed beyond breeding sites. Moreover, some CCPFs, especially in the marine realm (e.g., pinnipeds, turtles, and seabirds) are difficult to observe because they range tens to ten thousands of kilometers from their colonies. It is hypothesized that the distribution of CCPFs depends largely on habitat availability and intraspecific competition. Modeling these effects may therefore allow distributions to be estimated from samples of individual spatial usage. Such data can be obtained for an increasing number of species using tracking technology. However, techniques for estimating population-level distributions using the telemetry data are poorly developed. This is of concern because many marine CCPFs, such as seabirds, are threatened by anthropogenic activities. Here, we aim to estimate the distribution at sea of four seabird species, foraging from approximately 5,500 breeding sites in Britain and Ireland. To do so, we GPS-tracked a sample of 230 European Shags Phalacrocorax aristotelis, 464 Black-legged Kittiwakes Rissa tridactyla, 178 Common Murres Uria aalge, and 281 Razorbills Alca torda from 13, 20, 12, and 14 colonies, respectively. Using Poisson point process habitat use models, we show that distribution at sea is dependent on (1) density-dependent competition among sympatric conspecifics (all species) and parapatric conspecifics (Kittiwakes and Murres); (2) habitat accessibility and coastal geometry, such that birds travel further from colonies with limited access to the sea; and (3) regional habitat availability. Using these models, we predict space use by birds from unobserved colonies and thereby map the distribution at sea of each species at both the colony and regional level. Space use by all four species' British breeding populations is concentrated in the coastal waters of Scotland, highlighting the need for robust conservation measures in this area. The techniques we present are applicable to any CCPF.

We present an on-line early warning system that is operational in Scottish coastal waters to minimize the risk to humans and aquaculture businesses in terms of the human health and economic impacts of harmful algal blooms (HABs) and their associated biotoxins. The system includes both map and time-series based visualization tools. A “traffic light” index approach is used to highlight locations at elevated HAB/biotoxin risk. High resolution mathematical modelling of cell advection, in combination with satellite remote sensing, provides early warning of HABs that advect from offshore waters to the coast. Expert interpretation of HAB, biotoxin and environmental data in light of recent and historical trends is used to provide, on a weekly basis, a forecast of the risk from HABs and their biotoxins to allow mitigation measures to be put in place by aquaculture businesses, should a HAB event be imminent.

With the unprecedented expansion of aquaculture around the world, there is a critical need to monitor its progress. In Palawan, Philippines, coastal aquaculture is gaining momentum towards increasing fish production, a pressure that presents a challenge to the sustainability of these areas. In this paper, we explore the application of Earth observation methods to map coastal aquaculture development in Palawan and evaluate the extent of its change. The European Space Agency Sentinel-1 synthetic aperture radar and Sentinel-2 multispectral instrument sensor data were applied in fully automatic mode to build maps of Palawan coastal aquaculture. The maps were validated using Google Earth high-resolution optical images and in situ observations in Malampaya Sound, and demonstrated a successful detection rate of 72%, while the false alarm rate was less than 7.5%. Objects only 5 m across, four times smaller than the spatial resolution of the Sentinel-1 sensors, were successfully detected using the developed methodology, thus exceeding the capabilities of other published methods that are limited to detecting large groups of aquaculture structures. The maps revealed aquaculture structures in high quantities in Malampaya Sound, Taytay Bay, and other locations in the coastal waters of Palawan, Philippines. A significant change of aquaculture spatial distribution was identified by comparing aquaculture maps generated with an interval of three years. This new automated methodology was validated as robust for mapping aquaculture objects in Palawan, Philippines, and can be applied to aquaculture studies in other regions worldwide.

Oceanic internal waves occur within stratified water along the boundary between water layers of different density and are generated when strong tidal currents flow over seabed topography. Their amplitude can exceed 50 m and they transport energy over long distances and cause vertical mixing when the waves break. This study presents the first fully automated methodology for the mapping of internal waves using satellite synthetic aperture radar (SAR) data and applies this to explore their spatial and temporal distribution within UK shelf seas. The new algorithm includes enhanced edge detection and spatial processing to target the appearance of these features on satellite images. We acquired and processed over 7000 ENVISAT ASAR scenes covering the UK continental shelf between 2006 and 2012, to automatically generate detailed maps of internal waves. Monthly and annual internal wave climatology maps of the continental shelf were produced showing spatial and temporal variability, which can be used to predict where internal waves have the most impact on the seabed environment and ecology in UK shelf seas. These observations revealed correlations between the temporal patterns of internal waves and the seasons when the continental shelf waters were more stratified. The maps were validated using well-known seabed topographic features. Concentrations of internal waves were automatically identified at Wyville-Thomson Ridge in June 2008, at the continental shelf break to the east of Rosemary Bank in January 2010 and in the Faroe-Shetland Channel in June 2011. This new automated methodology has been shown to be robust for mapping internal waves using a large SAR dataset and is recommended for studies in other regions worldwide and for SAR data acquired by other sensors.

Across the European Atlantic Arc (Scotland, Ireland, England, France, Spain, and Portugal) the shellfish aquaculture industry is dominated by the production of mussels, followed by oysters and clams. A range of spatially and temporally variable harmful algal bloom species (HABs) impact the industry through their production of biotoxins that accumulate and concentrate in shellfish flesh, which negatively impact the health of consumers through consumption. Regulatory monitoring of harmful cells in the water column and toxin concentrations within shellfish flesh are currently the main means of warning of elevated toxin events in bivalves, with harvesting being suspended when toxicity is elevated above EU regulatory limits. However, while such an approach is generally successful in safeguarding human health, it does not provide the early warning that is needed to support business planning and harvesting by the aquaculture industry. To address this issue, a proliferation of web portals have been developed to make monitoring data widely accessible. These systems are now transitioning from “nowcasts” to operational Early Warning Systems (EWS) to better mitigate against HAB-generated harmful effects. To achieve this, EWS are incorporating a range of environmental data parameters and developing varied forecasting approaches. For example, EWS are increasingly utilizing satellite data and the results of oceanographic modeling to identify and predict the behavior of HABs. Modeling demonstrates that some HABs can be advected significant distances before impacting aquaculture sites. Traffic light indices are being developed to provide users with an easily interpreted assessment of HAB and biotoxin risk, and expert interpretation of these multiple data streams is being used to assess risk into the future. Proof-of-concept EWS are being developed to combine model information with in situ data, in some cases using machine learning-based approaches. This article: (1) reviews HAB and biotoxin issues relevant to shellfish aquaculture in the European Atlantic Arc (Scotland, Ireland, England, France, Spain, and Portugal; (2) evaluates the current status of HAB events and EWS in the region; and (3) evaluates the potential of further improving these EWS though multi-disciplinary approaches combining heterogeneous sources of information.

Bathymetric features such as islands and seamounts, as well as dynamic ocean features such as fronts often harbour rich marine communities. We deployed mid-water baited remote underwater video systems on three expeditions in Ascension Island’s Exclusive Economic Zone (EEZ), surveying the waters associated with six different bathymetric and dynamic ocean features: Ascension Island, two shallow seamounts (summits ≤ 101 m), one deeper seamount (summit > 250 m), apparent fronts, and haphazardly sampled open ocean areas. At Ascension Island, the pelagic assemblage consisted of a moderate proportion of predators and a diverse range of other taxa, including turtles, dolphins, and large non-piscivores. At the two shallow seamounts, sharks, tunas, billfish, and other large pelagic predators formed the vast majority of the assemblage, contributing > 99.9% of biomass and > 86% of abundance. At the deeper seamount, the pelagic community was comparatively depauperate, however the functional composition of its assemblage indicated some similarities to the shallow seamounts. Apparent fronts did not significantly differ from random offshore sites for metrics such as total abundance and taxonomic richness. However, they harboured assemblages with more abundant sharks, tunas, and large piscivores than random ocean open locations and these differences may be driven by certain front-associated species. Our results illustrate that pelagic assemblages vary markedly among different physical and oceanographic features and that seamounts appear particularly important for pelagic predators. The diversity and abundance of the assemblage, as well as the threatened status of many of the species observed, serve to highlight the conservation value of the Ascension Island EEZ. Our results also provide important baseline information of pelagic wildlife assemblages against which the performance of the recently implemented Ascension Island Marine Protected Area can be evaluated.

Early detection of dense harmful algal blooms (HABs) is possible using ocean colour remote sensing. Some algorithms require a training dataset, usually constructed from satellite images with a priori knowledge of the existence of the bloom. This approach can be limited if there is a lack of in situ observations, coincident with satellite images. A laboratory experiment collected biological and bio-optical data from a culture of Karenia mikimotoi , a harmful phytoplankton dinoflagellate. These data showed characteristic signals in chlorophyll-specific absorption and backscattering coefficients. The bio-optical data from the culture and a bio-optical model were used to construct a training dataset for an existing statistical classifier. MERIS imagery over the European continental shelf were processed with the classifier using different training datasets. The differences in positive rates of detection of K. mikimotoi between using an algorithm trained with purely manually selected areas on satellite images and using laboratory data as training was overall <1%. The difference was higher, <15%, when using modeled optical data rather than laboratory data, with potential for improvement if local average chlorophyll concentrations are used. Using a laboratory-derived training dataset improved the ability of the algorithm to distinguish high turbidity from high chlorophyll concentrations. However, additional in situ observations of non-harmful high chlorophyll blooms in the area would improve testing of the ability to distinguish harmful from non-harmful high chlorophyll blooms. This approach can be expanded to use additional wavelengths, different satellite sensors and different phytoplankton genera.

Identifying priority areas for marine vertebrate conservation is complex because species of conservation concern are highly mobile, inhabit dynamic habitats and are difficult to monitor. Many marine vertebrates are known to associate with oceanographic fronts – physical interfaces at the transition between water masses – for foraging and migration, making them important candidate sites for conservation. Here, we review associations between marine vertebrates and fronts and how they vary with scale, regional oceanography and foraging ecology. Accessibility, spatiotemporal predictability and relative productivity of front‐associated foraging habitats are key aspects of their ecological importance. Predictable mesoscale (10s–100s km) regions of persistent frontal activity (‘frontal zones’) are particularly significant. Frontal zones are hotspots of overlap between critical habitat and spatially explicit anthropogenic threats, such as the concentration of fisheries activity. As such, they represent tractable conservation units, in which to target measures for threat mitigation. Front mapping via Earth observation (EO) remote sensing facilitates identification and monitoring of these hotspots of vulnerability. Seasonal or climatological products can locate biophysical hotspots, while near‐real‐time front mapping augments the suite of tools supporting spatially dynamic ocean management. Synthesis and applications. Frontal zones are ecologically important for mobile marine vertebrates. We surmise that relative accessibility, predictability and productivity are key biophysical characteristics of ecologically significant frontal zones in contrasting oceanographic regions. Persistent frontal zones are potential priority conservation areas for multiple marine vertebrate taxa and are easily identifiable through front mapping via EO remote sensing. These insights are useful for marine spatial planning and marine biodiversity conservation, both within Exclusive Economic Zones and in the open oceans.